Uchl3-ps1 (ubiquitin C-terminal hydrolase L3, pseudogene 1) - Rat Genome Database

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Gene: Uchl3-ps1 (ubiquitin C-terminal hydrolase L3, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Uchl3-ps1
Name: ubiquitin C-terminal hydrolase L3, pseudogene 1
RGD ID: 621131
Description: INTERACTS WITH (+)-schisandrin B; ammonium chloride; finasteride
Type: pseudo
RefSeq Status: INFERRED
Previously known as: ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase); ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1; ubiquitin carboxyl-terminal esterase L3, pseudogene 1; Uchl3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Uchl3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83182,275,286 - 182,276,167 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.23161,856,954 - 161,857,835 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx3165,660,929 - 165,661,810 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03174,159,879 - 174,160,760 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,901,701 - 171,902,582 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03171,092,806 - 171,134,704 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03177,158,975 - 177,200,873 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43163,941,240 - 163,942,122 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3161,050,235 - 161,051,116 (-)NCBICelera
RGSC_v3.11585,644,346 - 85,686,130 (+)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Cloning, expression, and mapping of a mouse gene, Uchl4, highly homologous to human and mouse Uchl3. Osawa Y, etal., Biochem Biophys Res Commun 2001 May 11;283(3):627-33.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
Uchl4  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.43163,941,308 - 163,942,074UniSTSRGSC3.4
Celera3161,050,303 - 161,051,069UniSTS
Cytogenetic Map3q42UniSTS
Cytogenetic Map15q21UniSTS
BM390056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21578,494,992 - 78,495,193 (-)MAPPERmRatBN7.2
mRatBN7.21578,494,992 - 78,495,193 (+)MAPPERmRatBN7.2
Rnor_6.01586,163,284 - 86,163,484NCBIRnor6.0
Rnor_6.03171,124,878 - 171,125,078NCBIRnor6.0
Rnor_5.03177,191,047 - 177,191,247UniSTSRnor5.0
Rnor_5.01589,929,384 - 89,929,584UniSTSRnor5.0
RGSC_v3.41585,638,146 - 85,638,346UniSTSRGSC3.4
Celera1577,686,426 - 77,686,626UniSTS
RH 3.4 Map15503.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q42UniSTS
PMC85452P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.43163,941,362 - 163,942,072UniSTSRGSC3.4
Celera3161,050,357 - 161,051,067UniSTS
Cytogenetic Map3q42UniSTS
Cytogenetic Map15q21UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_591900
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03171,092,806 - 171,134,714 (-)NCBI
Protein Sequences
GenBank Protein EDL85124 (Get FASTA)   NCBI Sequence Viewer  

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46518 BioCyc
Ensembl Genes ENSRNOG00000065893 ENTREZGENE
NCBI Gene 114094 ENTREZGENE
PhenoGen Uchl3-ps1 PhenoGen
RatGTEx ENSRNOG00000065893 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-16 Uchl3-ps1  ubiquitin C-terminal hydrolase L3, pseudogene 1  Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3, pseudogene 1  Name changed 629549 APPROVED
2010-02-25 Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3, pseudogene 1  Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-02 Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1  Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-08 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)  LOC679036  similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3)  Data merged from RGD:1593088 1643240 APPROVED
2006-11-20 LOC679036  similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3)      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)      Symbol and Name status set to provisional 70820 PROVISIONAL