Slc20a1 (solute carrier family 20 member 1)

Gene: Slc20a1 (solute carrier family 20 member 1) Rattus norvegicus

Analyze

Symbol:

Slc20a1

Name:

solute carrier family 20 member 1

RGD ID:

621079

Description:

Enables high-affinity inorganic phosphate:sodium symporter activity. Involved in phosphate ion transport and sodium ion transport. Predicted to be located in plasma membrane. Orthologous to human SLC20A1 (solute carrier family 20 member 1); PARTICIPATES IN phosphate transport pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

phosphate transporter 1; PiT-1; RPHO-1; sodium-dependent phosphate transporter 1; solute carrier family 20 (phosphate transporter), member 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC20A1 (solute carrier family 20 member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc20a1 (solute carrier family 20, member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc20a1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC20A1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC20A1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc20a1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC20A1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC20A1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc20a1 (solute carrier family 20 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Slc20a1 (solute carrier family 20, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC20A1 (solute carrier family 20 member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc20a1a (solute carrier family 20 member 1a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	slc20a1b (solute carrier family 20 member 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PHO89	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	NaPi-III	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pitr-1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	pitr-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pitr-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pitr-4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	pitr-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pitr-6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc20a1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	136,880,360 - 136,894,255 (+)	NCBI		GRCr8
mRatBN7.2	3	116,427,095 - 116,441,049 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	116,427,098 - 116,441,051 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	120,325,025 - 120,337,944 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	128,920,621 - 128,933,540 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	126,581,101 - 126,594,020 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	121,725,204 - 121,739,160 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	121,725,859 - 121,739,173 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	128,276,532 - 128,292,024 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	116,813,990 - 116,828,049 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	116,719,562 - 116,733,622 (+)	NCBI
Celera	3	115,254,201 - 115,267,277 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Calcification of Aortic Valve (ISO)

endometriosis (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Metabolic Bone Diseases (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

adenine (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

azathioprine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (EXP,ISO)

bis(2-chloroethyl) sulfide (EXP)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

caffeine (ISO)

calcitriol (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

chlorpyrifos (EXP)

choline (ISO)

cisplatin (ISO)

clofibric acid (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

curcumin (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

diquat (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

flavonoids (ISO)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fumonisin B1 (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

hypochlorous acid (ISO)

imidacloprid (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

L-methionine (ISO)

leflunomide (EXP,ISO)

linalool (EXP)

lipopolysaccharide (EXP,ISO)

lithium atom (ISO)

lithium chloride (ISO)

lithium hydride (ISO)

menadione (ISO)

mercury dichloride (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenethyl isothiocyanate (ISO)

phenobarbital (ISO)

phosphonoformic acid (EXP,ISO)

pirinixic acid (ISO)

potassium atom (EXP)

progesterone (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

ranitidine (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sarin (ISO)

SB 203580 (ISO)

sevoflurane (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium atom (ISO)

sodium dichromate (EXP)

sodium dodecyl sulfate (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

Theaflavin 3,3'-digallate (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

toluene (EXP)

topotecan (EXP)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

zidovudine (ISO)

zinc atom (EXP,ISO)

zinc sulfate (EXP)

zinc(0) (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biomineral tissue development (ISO)

cell population proliferation (ISO,ISS)

phosphate ion transmembrane transport (IBA)

phosphate ion transport (IDA)

positive regulation of canonical NF-kappaB signal transduction (ISO)

sodium ion transmembrane transport (IEA)

sodium ion transport (IDA)

Cellular Component

plasma membrane (ISO,ISS)

Molecular Function

high-affinity phosphate:sodium symporter activity (IDA)

phosphate transmembrane transporter activity (IBA)

sodium:phosphate symporter activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

phosphate transport pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Phosphate handling: new genes, new molecules.	Prie D, etal., Horm Res Paediatr. 2011;76 Suppl 1:71-5. doi: 10.1159/000329175. Epub 2011 Jul 21.
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Molecular cloning and hormonal regulation of PiT-1, a sodium-dependent phosphate cotransporter from rat parathyroid glands.	Tatsumi S, etal., Endocrinology 1998 Apr;139(4):1692-9.

Additional References at PubMed

PMID:12477932	PMID:12606316	PMID:12761501	PMID:14985238	PMID:15564340	PMID:17322102	PMID:17438129	PMID:17565274	PMID:19506901	PMID:19655218	PMID:19806400	PMID:21643723
PMID:22871113	PMID:26581047	PMID:26782594	PMID:27812542	PMID:28123180

Genomics

Comparative Map Data

Slc20a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	136,880,360 - 136,894,255 (+)	NCBI		GRCr8
mRatBN7.2	3	116,427,095 - 116,441,049 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	116,427,098 - 116,441,051 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	120,325,025 - 120,337,944 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	128,920,621 - 128,933,540 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	126,581,101 - 126,594,020 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	121,725,204 - 121,739,160 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	121,725,859 - 121,739,173 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	128,276,532 - 128,292,024 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	116,813,990 - 116,828,049 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	116,719,562 - 116,733,622 (+)	NCBI
Celera	3	115,254,201 - 115,267,277 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

SLC20A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	112,645,939 - 112,663,825 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	112,645,939 - 112,663,825 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	113,403,516 - 113,421,402 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	113,119,998 - 113,137,873 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	113,119,757 - 113,137,629	NCBI
Celera	2	106,789,056 - 106,806,930 (+)	NCBI		Celera
Cytogenetic Map	2	q14.1	NCBI
HuRef	2	105,857,945 - 105,875,919 (+)	NCBI		HuRef
CHM1_1	2	113,407,525 - 113,425,488 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	113,072,544 - 113,090,428 (+)	NCBI		T2T-CHM13v2.0

Slc20a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	129,038,662 - 129,053,535 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	129,040,684 - 129,053,536 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	129,198,773 - 129,211,615 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	129,198,764 - 129,211,616 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	129,024,509 - 129,037,351 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	128,890,241 - 128,903,050 (+)	NCBI		MGSCv36	mm8
Celera	2	130,425,457 - 130,438,207 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	62.79	NCBI

Slc20a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	1,634,476 - 1,649,234 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	1,634,470 - 1,649,234 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC20A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	15,459,373 - 15,477,296 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	15,462,137 - 15,479,221 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	89,394,161 - 89,412,141 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	113,657,911 - 113,675,914 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	113,657,901 - 113,679,575 (+)	Ensembl	panpan1.1		panPan2

SLC20A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	36,863,786 - 36,879,331 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	36,863,659 - 36,909,318 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	36,632,435 - 36,648,612 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	37,639,174 - 37,655,399 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	37,639,169 - 37,655,399 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	36,777,137 - 36,793,360 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	36,831,126 - 36,847,341 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	37,044,911 - 37,061,103 (+)	NCBI		UU_Cfam_GSD_1.0

Slc20a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	82,223,351 - 82,236,707 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936783	1,117,829 - 1,131,213 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936783	1,117,835 - 1,130,739 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC20A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	43,844,722 - 43,860,547 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	43,844,716 - 43,860,547 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC20A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	15,657,888 - 15,676,649 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	15,659,361 - 15,676,645 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666080	4,005,482 - 4,024,459 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc20a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	12,631,259 - 12,702,867 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc20a1
98 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	91
Count of miRNA genes:	80
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000025294
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	3	115638168	135181505	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat

Markers in Region

RH128315

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	116,440,469 - 116,440,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	121,738,581 - 121,738,769	NCBI	Rnor6.0
Rnor_5.0	3	128,276,923 - 128,277,111	UniSTS	Rnor5.0
RGSC_v3.4	3	116,827,481 - 116,827,669	UniSTS	RGSC3.4
Celera	3	115,266,709 - 115,266,897	UniSTS
RH 3.4 Map	3	999.6	UniSTS
Cytogenetic Map	3	q36	UniSTS

AA963219

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	116,440,709 - 116,440,920 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	121,738,821 - 121,739,031	NCBI	Rnor6.0
Rnor_5.0	3	128,276,661 - 128,276,871	UniSTS	Rnor5.0
RGSC_v3.4	3	116,827,721 - 116,827,931	UniSTS	RGSC3.4
Celera	3	115,266,949 - 115,267,159	UniSTS
RH 3.4 Map	3	1001.1	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH138625

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	116,436,742 - 116,436,868 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	121,734,854 - 121,734,979	NCBI	Rnor6.0
Rnor_5.0	3	128,280,713 - 128,280,838	UniSTS	Rnor5.0
RGSC_v3.4	3	116,823,754 - 116,823,879	UniSTS	RGSC3.4
Celera	3	115,262,982 - 115,263,107	UniSTS
RH 3.4 Map	3	1000.2	UniSTS
Cytogenetic Map	3	q36	UniSTS

Slc10a1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	116,428,543 - 116,428,971 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	121,726,661 - 121,727,088	NCBI	Rnor6.0
Rnor_5.0	3	128,288,604 - 128,289,031	UniSTS	Rnor5.0
RGSC_v3.4	3	116,814,575 - 116,815,002	UniSTS	RGSC3.4
Celera	3	115,254,786 - 115,255,213	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	4	4	74	35	40	11	4
Low		1					4	7			1		4
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB000489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC121664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC060311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025294 ⟹ ENSRNOP00000025294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	116,427,098 - 116,441,051 (+)	Ensembl
Rnor_6.0 Ensembl	3	121,725,859 - 121,739,173 (+)	Ensembl

RefSeq Acc Id:

NM_031148 ⟹ NP_112410

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,881,171 - 136,894,244 (+)	NCBI
mRatBN7.2	3	116,427,959 - 116,441,038 (+)	NCBI
Rnor_6.0	3	121,726,076 - 121,739,149 (+)	NCBI
Rnor_5.0	3	128,276,532 - 128,292,024 (-)	NCBI
RGSC_v3.4	3	116,813,990 - 116,828,049 (+)	RGD
Celera	3	115,254,201 - 115,267,277 (+)	RGD

Sequence:

show sequence

GAAAGCCGCTCAGTAATTCTCGTATTATTTAAAGAACCACTACACTACAGGATGGCATCTACCC
TGGCCCCGATTACTAGTACTCTAGCTGCTGTTACTGCTTCTGCTCCACCGAAGTATGACAATCT
GTGGATGCTCATCCTGGGCTTCATCATTGCATTTGTCTTGGCATTCTCCGTGGGAGCCAATGAT
GTAGCAAATTCATTTGGTACAGCTGTAGGCTCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCC
TAGCTAGCATCTTCGAAACTGTGGGCTCCGCCTTGCTGGGGGCCAAAGTGAGTGAAACCATCCG
GAAGGGCTTGATAGATGTGGAGAAGTACAACGCAACTCAAGATCTGCTCATGGCTGGCTCTGTC
AGTGCTATGTTTGGTTCTGCTGTGTGGCAACTAGTGGCTTCGTTTTTGAAGCTTCCTATTTCTG
GGACCCATTGTATTGTCGGTGCAACCATTGGTTTCTCCCTTGTGGCAAAGGGACAAGAGGGTAT
CAAATGGTCCGAACTGATAAAAATTGTGATGTCTTGGTTCGTCTCTCCACTGCTTTCTGGTATT
ATGTCTGGAATTTTATTCTTCCTTGTTCGTGCATTCATCCTCCGTAAGGCAGATCCAGTTCCTA
ATGGCTTACGAGCTTTACCCATTTTTTATGCCTGCACAATTGGAATCAACCTCTTTTCCATTAT
GTATACTGGAGCACCATTGCTGGGCTTTGACAAACTTCCTCTGTGGGGTACCATCCTCATCTCG
GTGGGATGTGCAGTTTTCTGTGCCCTTATCGTCTGGTTCTTCGTATGTCCCAGGATGAAGAGGA
AAATTGAACGAGAAGTAAAGTCTAGTCCCTCTGAAAGTCCCTTAATGGAAAAGAAGAACAACTT
AAAAGACCATGAAGAAACAAAGATGGCTCCTGGCGATGTTGAGAATAGGAATCCTGTGTCTGAG
GTAGTATGTGCCACTGGCCCACTACGGGCTGTGGTGGAGGAGAGAACGGTGTCATTTAAACTCG
GTGACCTGGAGGAAGCTCCGGAGCGAGAGCGGCTTCCCATGGACCTGAAGGAGGAGACCAACAT
AGATGGTACTATCAATGGTGCAGTGCAGTTGCCTAATGGGAACCTTGTTCAGTTCAGTCAAACC
GTCAGCAACCAGATCAACTCCAGTGGCCACTATCAGTATCACACCGTGCACAAGGATTCTGGCT
TGTACAAAGAGCTGCTCCATAAGCTACATCTGGCCAAGGTGGGAGACTGCATGGGAGACTCTGG
GGACAAGCCCTTGAGACGCAACAACAGCTACACATCCTACACCATGGCAATATGTGGCATGCCC
CTGGATTCCTTCCGTGCCAAAGAAGGGGAACAAAAGGGAGACGAAATGGAAACGCTGACTTGGC
CTAATGCAGATACCAAGAAGCGGATTCGGATGGACAGTTACACCAGTTACTGCAATGCTGTGTC
TGACCTTCACTCAGAGTCTGAGATGGACATGAGTGTTAAGGCAGAGATGGGTCTGGGTGACAGA
AAAGGAAGCAGTGGCTCTCTTGAAGAATGGTATGATCAGGATAAGCCTGAAGTGTCCCTTCTCT
TCCAGTTTCTGCAGATCCTTACAGCCTGCTTTGGGTCCTTTGCCCATGGTGGCAATGACGTCAG
CAATGCCATCGGCCCTCTGGTTGCTTTGTATCTTGTTTATGAAACGAGAGATGTCACTACAAAA
GAGGCAACACCCATATGGCTTCTGCTTTATGGTGGTGTTGGCATTTGCATGGGGCTATGGGTTT
GGGGAAGAAGAGTTATCCAGACTATGGGGAAGGACCTGACACCAATCACACCCTCCAGTGGTTT
CAGTATTGAACTGGCATCTGCCTTCACTGTGGTCGTCGCATCAAACATTGGCCTTCCCATCAGC
ACAACACATTGTAAGGTGGGCTCTGTGGTGTCTGTTGGCTGGCTCCGATCCAAGAAGGCTGTTG
ACTGGCGACTGTTTCGAAACATTTTTATGGCCTGGTTTGTCACCGTCCCTATTTCTGGGGTTAT
CAGTGCTGCTATCATGGCAGTGTTCAAGCACATCATTCTGCCGGTGTGAAGCTGAACTCAGAAT
TGTGTCAGTGTCTGGGACCATCGCACACACCCCTGTTCCTAAAGAATGCTCAGTGTTGCTGAAG
ATAGGCCAGGGTTTTAAAGTGGGGGAGCTGTGGGAAGGAAGTGTAATTTATACTATAATTGCTT
TTGTGCTAAATATGACTTATCTCAAAATTAGCTGTGTAAAATAGCCAGGTTTCCATTGATTCAT
TCTAAGGTCCCTTTTCTCCTGGGCTATGACTTCCTGTACATATTTCTCTACTTTTGTATCAGGC
ATCAATTCCATTATGTTTTAATGTCGTCTGTGAGATAACTTAATGTGGATTCCTTTTAAACAGC
CAAGCAGAGCCATTTGATGGCATATACTGCTTTGTTGGCCTCACCAGCTTCTTCCCCAGCGTGC
ACAGGGATTTAACAACATGTAACTGAAGCTTCCCTTGTAGTCTCTCATAGAAATAGTCACGGCA
CTCTGCTCCCTGTCACTAGTGGCAGGTTCTGTTGACATGTGACAACTTCTTAGAGGGCCGAGAA
TCTTTGGCACAGTGAAAATTTAAGTTTGTAGTAACTTCTTTGCAAACAGTTCGTGGACGTGTTG
CTAAGAAGTAGGAAGACAAAGCCTGGTGGTTGTGGTTATTCTTTTGAGATTTCTGGCAGTGTGG
GATGGGTGAATGAAGTGGAATGGGAACTTTGGGCAAATTCAATGGGACAGCCTTCCATGTTCAT
CTGTCTACCTCTTAACTGAATAAAAAGCCTACAG

hide sequence

RefSeq Acc Id:

XM_006234991 ⟹ XP_006235053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,880,360 - 136,894,255 (+)	NCBI
mRatBN7.2	3	116,427,098 - 116,441,049 (+)	NCBI
Rnor_6.0	3	121,725,205 - 121,739,160 (+)	NCBI
Rnor_5.0	3	128,276,532 - 128,292,024 (-)	NCBI

Sequence:

show sequence

CGTGCTCGCTAGATGATGGCCGCCGGCGCGCATTGCGCGTTTTCTTCTCTCGCCTGCTGAGGCG
CCAGCGGCTGCTTCACGAGTGGGTAGAGAGTTCCTCCGTGCTGTTCCCGGTGTTGCGGTGCTGG
GTTGTGCGACTGTGACTCGAGCCTGTTTCAGCCTCGTTCTTCTGGTCTCTGTTCGGCCCTCAGT
TTCCTTTGGATGAACTTGCGTCCTTTCTCTAATCCGCCATGGAATTCTGCTCCGTGCTTTTAGC
CGTCCAGAGCCAAAGAAACCCCAGACAACAGACGCTCAAACGCAGCGTATAGCAGTAACTCCCC
AGCTCGGTTTCTGTGCCGTAGTTTACAGTATTTAATTTTATATAATATATACTATTTATTATAG
CATTTTTTGATACCTCATTCCGTTTACACATCTTGAAAGCCGCTCAGTAATTCTCGTATTATTT
AAAGAACCACTACACTACAGGATGGCATCTACCCTGGCCCCGATTACTAGTACTCTAGCTGCTG
TTACTGCTTCTGCTCCACCGAAGTATGACAATCTGTGGATGCTCATCCTGGGCTTCATCATTGC
ATTTGTCTTGGCATTCTCCGTGGGAGCCAATGATGTAGCAAATTCATTTGGTACAGCTGTAGGC
TCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCCTAGCTAGCATCTTCGAAACTGTGGGCTCCG
CCTTGCTGGGGGCCAAAGTGAGTGAAACCATCCGGAAGGGCTTGATAGATGTGGAGAAGTACAA
CGCAACTCAAGATCTGCTCATGGCTGGCTCTGTCAGTGCTATGTTTGGTTCTGCTGTGTGGCAA
CTAGTGGCTTCGTTTTTGAAGCTTCCTATTTCTGGGACCCATTGTATTGTCGGTGCAACCATTG
GTTTCTCCCTTGTGGCAAAGGGACAAGAGGGTATCAAATGGTCCGAACTGATAAAAATTGTGAT
GTCTTGGTTCGTCTCTCCACTGCTTTCTGGTATTATGTCTGGAATTTTATTCTTCCTTGTTCGT
GCATTCATCCTCCGTAAGGCAGATCCAGTTCCTAATGGCTTACGAGCTTTACCCATTTTTTATG
CCTGCACAATTGGAATCAACCTCTTTTCCATTATGTATACTGGAGCACCATTGCTGGGCTTTGA
CAAACTTCCTCTGTGGGGTACCATCCTCATCTCGGTGGGATGTGCAGTTTTCTGTGCCCTTATC
GTCTGGTTCTTTGTATGTCCCAGGATGAAGAGGAAAATTGAACGAGAAGTAAAGTCTAGTCCCT
CTGAAAGTCCCTTAATGGAAAAGAAGAACAACTTAAAAGACCATGAAGAAACAAAGATGGCTCC
TGGCGATGTTGAGAATAGGAATCCTGTGTCTGAGGTAGTATGTGCCACTGGCCCACTACGGGCT
GTGGTGGAGGAGAGAACGGTGTCATTTAAACTCGGTGACCTGGAGGAAGCTCCGGAGCGAGAGC
GGCTTCCCATGGACCTGAAGGAGGAGACCAACATAGATGGTACTATCAATGGTGCAGTGCAGTT
GCCTAATGGGAACCTTGTTCAGTTCAGTCAAACCGTCAGCAACCAGATCAACTCCAGTGGCCAC
TATCAGTATCACACCGTGCACAAGGATTCTGGCTTGTACAAAGAGCTGCTCCATAAGCTACATC
TGGCCAAGGTGGGAGACTGCATGGGAGACTCTGGGGACAAGCCCTTGAGACGCAACAACAGCTA
CACATCCTACACCATGGCAATATGTGGCATGCCCCTGGATTCCTTCCGTGCCAAAGAAGGGGAA
CAAAAGGGAGACGAAATGGAAACGCTGACTTGGCCTAATGCAGATACCAAGAAGCGGATTCGGA
TGGACAGTTACACCAGTTACTGCAATGCTGTGTCTGACCTTCACTCAGAGTCTGAGATGGACAT
GAGTGTTAAGGCAGAGATGGGTCTGGGTGACAGAAAAGGAAGCAGTGGCTCTCTTGAAGAATGG
TATGATCAGGATAAGCCTGAAGTGTCCCTTCTCTTCCAGTTTCTGCAGATCCTTACAGCCTGCT
TTGGGTCCTTTGCCCATGGTGGCAATGACGTCAGCAATGCCATCGGCCCTCTGGTTGCTTTGTA
TCTTGTTTATGAAACGAGAGATGTCACTACAAAAGAGGCAACACCCATATGGCTTCTGCTTTAT
GGTGGTGTTGGCATTTGCATGGGGCTATGGGTTTGGGGAAGAAGAGTTATCCAGACTATGGGGA
AGGACCTGACACCAATCACACCCTCCAGTGGTTTCAGTATTGAACTGGCATCTGCCTTCACTGT
GGTCGTCGCATCAAACATTGGCCTTCCCATCAGCACAACACATTGTAAGGTGGGCTCTGTGGTG
TCTGTTGGCTGGCTCCGATCCAAGAAGGCTGTTGACTGGCGACTGTTTCGAAACATTTTTATGG
CCTGGTTTGTCACCGTCCCTATTTCTGGGGTTATCAGTGCTGCTATCATGGCAGTGTTCAAGCA
CATCATTCTGCCGGTGTGAAGCTGAGCTCAGAATTGTGTCAGTGTCTGGGACCATCGCACACAC
CCCTGTTCCTAAAGAATGCTCAGTGTTGCTGAAGATAGGCCAGGGTTTTAAAGTGGGGGAGCTG
TGGGAAGGAAGTGTAATTTATACTATAATTGCTTTTGTGCTAAATATGACTTATCTCAAAATTA
GCTGTGTAAAATAGCCAGGTTTCCATTGATTCATTCTAAGGTCCCTTTTCTCCTGGGCTATGAC
TTCCTGTACATATTTCTCTACTTTTGTATCAGGCATCAATTCCATTATGTTTTAATGTCGTCTG
TGAGATAACTTAATGTGGATTCTTTTTAAACAGCCAAGCAGAGCCATTTGATGGCATATACTGC
TTTGTTGGCCTCACCAGCTTCTTCCCCAGCGTGCACAGGGATTTAACAAACATGTAACTGAAGC
TTCCCTTGTAGTCTCTCATAGAAATAGTCACGGCACTCTGCTCCCTGTCACTAGTGGCAGGTTC
TGTTGACATGTGACAACTTCTTAGAGGGCCGAGAATCTTTGGCACAGTGAAAATTTAAGTTTGT
AGTAACTTCTTTGCAAACAGTTCGTGGACGTGTTGCTAAGAAGTAGGAAGACAAAGCCTGGTGG
TTGTGGTTATTCTTTTGAGATTTCTGGCAGTGTGGGATGGGTGAATGAAGTGGAATGGGAACTT
TGGGCAAATTCAATGGGACAGCCTTCCATGTTCATCTGTCTACCTCTTAACTGAATAAAAAGCC
TACAGTTTTTAGAAAA

hide sequence

RefSeq Acc Id:

XM_006234992 ⟹ XP_006235054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,880,360 - 136,887,620 (+)	NCBI
mRatBN7.2	3	116,427,095 - 116,434,575 (+)	NCBI
Rnor_6.0	3	121,725,204 - 121,731,745 (+)	NCBI
Rnor_5.0	3	128,276,532 - 128,292,024 (-)	NCBI

Sequence:

show sequence

GCGTGCTCGCTAGATGATGGCCGCCGGCGCGCATTGCGCGTTTTCTTCTCTCGCCTGCTGAGGC
GCCAGCGGCTGCTTCACGAGTGGGTAGAGAGTTCCTCCGTGCTGTTCCCGGTGTTGCGGTGCTG
GGTTGTGCGACTGTGACTCGAGCCTGTTTCAGCCTCGTTCTTCTGGTCTCTGTTCGGCCCTCAG
TTTCCTTTGGATGAACTTGCGTCCTTTCTCTAATCCGCCATGGAATTCTGCTCCGTGCTTTTAG
CCGTCCAGAGCCAAAGAAACCCCAGACAACAGACGCTCAAACGCAGCGTATAGCAGTAACTCCC
CAGCTCGGTTTCTGTGCCGTAGTTTACAGTATTTAATTTTATATAATATATACTATTTATTATA
GCATTTTTTGATACCTCATTCCGTTTACACATCTTGAAAGCCGCTCAGTAATTCTCGTATTATT
TAAAGAACCACTACACTACAGGATGGCATCTACCCTGGCCCCGATTACTAGTACTCTAGCTGCT
GTTACTGCTTCTGCTCCACCGAAGTATGACAATCTGTGGATGCTCATCCTGGGCTTCATCATTG
CATTTGTCTTGGCATTCTCCGTGGGAGCCAATGATGTAGCAAATTCATTTGGTACAGCTGTAGG
CTCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCCTAGCTAGCATCTTCGAAACTGTGGGCTCC
GCCTTGCTGGGGGCCAAAGTGAGTGAAACCATCCGGAAGGGCTTGATAGATGTGGAGAAGTACA
ACGCAACTCAAGATCTGCTCATGGCTGGCTCTGTCAGTGCTATGTTTGGTTCTGCTGTGTGGCA
ACTAGTGGCTTCGTTTTTGAAGCTTCCTATTTCTGGGACCCATTGTATTGTCGGTGCAACCATT
GGTTTCTCCCTTGTGGCAAAGGGACAAGAGGGTATCAAATGGTCCGAACTGATAAAAATTGTGA
TGTCTTGGTTCGTCTCTCCACTGCTTTCTGGTATTATGTCTGGAATTTTATTCTTCCTTGTTCG
TGCATTCATCCTCCGTAAGGCAGATCCAGTTCCTAATGGCTTACGAGCTTTACCCATTTTTTAT
GCCTGCACAATTGGAATCAACCTCTTTTCCATTATGTATACTGGAGCACCATGGCTGAAATCTC
CTAGAAGGTGGCTGGCCTGCACCCATTTCAGAAGGCTGCAGGCTAGTGTATGCTGAGTTAACCT
AGATAGGTTTTCAACCAGAGAGACCTGCTCAGATTCTAAATCACTACAGACCTTTCCTCTTTAG
TCTTCACAGGATCCACTGATAATATGACCTTCTCCCTCCCTTTCTTGTGTCTCTGCTAAAAATG
CTGCAAATGATACTGGCCTCAACTACTAAGAGTCGTTACTTAAATCCATTCTTCAATAGTCAGC
TATTTAGGACTGCTTGTTAGATGTCACTTTTCTCTCCCAGTTGGAGCCATTTCGGTTTCTAAGT
TCTCAGTTTGTGCCCCTCAATTGACTTGAATGAGAAGAGTTGGGATGTATAATACCTGATCTAA
TTGCACCTTGAAGAAGAATTTCTGCAGCTAAGAGAAAGCATTTGGGAGGAATATAAAGGCTCTG
TCTAGTGTTGATTCTTTCATATTTCGAGTAAGGGAAGGCGAGGATTCAGTCAACTGAGAGATTG
GTAGATTGGGCCTTGTGAGGCAGAACAACACAGTTCTGGTATCCAGACTCGTTTGACTTGCTAG
TTCTTTTGGTTCTTTTTTTTCGGAGCTAGGGACCGAACCCAGGGCCTTGCGCTT

hide sequence

RefSeq Acc Id:

XM_039105927 ⟹ XP_038961855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,881,713 - 136,894,255 (+)	NCBI
mRatBN7.2	3	116,428,490 - 116,441,049 (+)	NCBI

RefSeq Acc Id:

XM_039105928 ⟹ XP_038961856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,886,239 - 136,894,255 (+)	NCBI
mRatBN7.2	3	116,433,027 - 116,441,049 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_112410	(Get FASTA)	NCBI Sequence Viewer
	XP_006235053	(Get FASTA)	NCBI Sequence Viewer
	XP_006235054	(Get FASTA)	NCBI Sequence Viewer
	XP_038961855	(Get FASTA)	NCBI Sequence Viewer
	XP_038961856	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB07789	(Get FASTA)	NCBI Sequence Viewer
	EDL80156	(Get FASTA)	NCBI Sequence Viewer
	EDL80157	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025294
	ENSRNOP00000025294.4
	ENSRNOP00055007515
	ENSRNOP00060020430
	ENSRNOP00065018351
GenBank Protein	Q9JJP0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112410 ⟸ NM_031148

- UniProtKB:

Q9JJP0 (UniProtKB/Swiss-Prot), A6HQ55 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASTLAPITSTLAAVTASAPPKYDNLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLK
QACILASIFETVGSALLGAKVSETIRKGLIDVEKYNATQDLLMAGSVSAMFGSAVWQLVASFLK
LPISGTHCIVGATIGFSLVAKGQEGIKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILRKA
DPVPNGLRALPIFYACTIGINLFSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCP
RMKRKIEREVKSSPSESPLMEKKNNLKDHEETKMAPGDVENRNPVSEVVCATGPLRAVVEERTV
SFKLGDLEEAPERERLPMDLKEETNIDGTINGAVQLPNGNLVQFSQTVSNQINSSGHYQYHTVH
KDSGLYKELLHKLHLAKVGDCMGDSGDKPLRRNNSYTSYTMAICGMPLDSFRAKEGEQKGDEME
TLTWPNADTKKRIRMDSYTSYCNAVSDLHSESEMDMSVKAEMGLGDRKGSSGSLEEWYDQDKPE
VSLLFQFLQILTACFGSFAHGGNDVSNAIGPLVALYLVYETRDVTTKEATPIWLLLYGGVGICM
GLWVWGRRVIQTMGKDLTPITPSSGFSIELASAFTVVVASNIGLPISTTHCKVGSVVSVGWLRS
KKAVDWRLFRNIFMAWFVTVPISGVISAAIMAVFKHIILPV

hide sequence

RefSeq Acc Id:	XP_006235053 ⟸ XM_006234991
- Peptide Label:	isoform X1
- UniProtKB:	Q9JJP0 (UniProtKB/Swiss-Prot), A6HQ55 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASTLAPITSTLAAVTASAPPKYDNLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLK QACILASIFETVGSALLGAKVSETIRKGLIDVEKYNATQDLLMAGSVSAMFGSAVWQLVASFLK LPISGTHCIVGATIGFSLVAKGQEGIKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILRKA DPVPNGLRALPIFYACTIGINLFSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCP RMKRKIEREVKSSPSESPLMEKKNNLKDHEETKMAPGDVENRNPVSEVVCATGPLRAVVEERTV SFKLGDLEEAPERERLPMDLKEETNIDGTINGAVQLPNGNLVQFSQTVSNQINSSGHYQYHTVH KDSGLYKELLHKLHLAKVGDCMGDSGDKPLRRNNSYTSYTMAICGMPLDSFRAKEGEQKGDEME TLTWPNADTKKRIRMDSYTSYCNAVSDLHSESEMDMSVKAEMGLGDRKGSSGSLEEWYDQDKPE VSLLFQFLQILTACFGSFAHGGNDVSNAIGPLVALYLVYETRDVTTKEATPIWLLLYGGVGICM GLWVWGRRVIQTMGKDLTPITPSSGFSIELASAFTVVVASNIGLPISTTHCKVGSVVSVGWLRS KKAVDWRLFRNIFMAWFVTVPISGVISAAIMAVFKHIILPV hide sequence

RefSeq Acc Id:

XP_006235054 ⟸ XM_006234992

- Peptide Label:

isoform X4

- Sequence:

show sequence

MASTLAPITSTLAAVTASAPPKYDNLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLK
QACILASIFETVGSALLGAKVSETIRKGLIDVEKYNATQDLLMAGSVSAMFGSAVWQLVASFLK
LPISGTHCIVGATIGFSLVAKGQEGIKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILRKA
DPVPNGLRALPIFYACTIGINLFSIMYTGAPWLKSPRRWLACTHFRRLQASVC

hide sequence

RefSeq Acc Id:

ENSRNOP00000025294 ⟸ ENSRNOT00000025294

RefSeq Acc Id:	XP_038961855 ⟸ XM_039105927
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038961856 ⟸ XM_039105928
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JJP0-F1-model_v2	AlphaFold	Q9JJP0	1-681	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621079	AgrOrtholog
BioCyc Gene	G2FUF-47918	BioCyc
Ensembl Genes	ENSRNOG00000018567	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055006005	UniProtKB/Swiss-Prot
	ENSRNOG00060014956	UniProtKB/Swiss-Prot
	ENSRNOG00065014314	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025294.7	UniProtKB/Swiss-Prot
	ENSRNOT00055009733	UniProtKB/Swiss-Prot
	ENSRNOT00060025603	UniProtKB/Swiss-Prot
	ENSRNOT00065023597	UniProtKB/Swiss-Prot
InterPro	Phos_transporter	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81826	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	81826	ENTREZGENE
PANTHER	PHOSPHATE TRANSPORTER	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
	SODIUM-DEPENDENT PHOSPHATE TRANSPORTER 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PHO4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc20a1	PhenoGen
RatGTEx	ENSRNOG00000018567	RatGTEx
	ENSRNOG00055006005	RatGTEx
	ENSRNOG00060014956	RatGTEx
	ENSRNOG00065014314	RatGTEx
UniProt	A6HQ55	ENTREZGENE, UniProtKB/TrEMBL
	A6HQ56_RAT	UniProtKB/TrEMBL
	Q9JJP0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Slc20a1	solute carrier family 20 member 1	Slc20a1	solute carrier family 20 (phosphate transporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Slc20a1	solute carrier family 20 (phosphate transporter), member 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Slc20a1	solute carrier family 20 (phosphate transporter), member 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	mainly expressed in brain, bone, and small intestine but lower levels of expression seen in most other tissues	633932

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations