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Gene: Mta1 (metastasis associated 1) Rattus norvegicus

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Symbol:

Mta1

Name:

metastasis associated 1

RGD ID:

621018

Description:

Enables enzyme binding activity. Involved in female pregnancy and secretory granule organization. Located in Golgi apparatus; endoplasmic reticulum; and nucleus. Orthologous to human MTA1 (metastasis associated 1); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

metastasis-associated protein MTA1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MTA1 (metastasis associated 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Mta1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mta1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MTA1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MTA1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mta1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MTA1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MTA1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mta1 (metastasis associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MTA1 (metastasis associated 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mta1 (metastasis associated 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mta1 (metastasis associated 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-40	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-40	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	MTA1-like	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mta1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,999,845 - 138,038,696 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	137,999,915 - 138,038,696 (+)	Ensembl				GRCr8
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	132,178,853 - 132,217,641 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	132,348,104 - 132,386,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,638,410 - 132,676,954 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	132,013,263 - 132,052,041 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,911,302 - 137,950,066 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,924,293 - 137,950,075 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	146,918,915 - 146,944,409 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	138,118,468 - 138,143,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	129,730,599 - 129,756,091 (+)	NCBI		Celera
RGSC_v3.1	6	137,666,187 - 138,150,170 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

endometriosis (ISO)

Lymphatic Metastasis (ISO)

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-methoxyethanol (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

amphetamine (EXP)

andrographolide (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

azoxystrobin (ISO)

bathocuproine disulfonic acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (EXP)

cadmium acetate (ISO)

cadmium atom (ISO)

caffeine (ISO)

captan (ISO)

chlordecone (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyproterone acetate (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dimethylarsinic acid (EXP)

fenpyroximate (ISO)

folpet (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

ivermectin (ISO)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methamphetamine (ISO)

methimazole (EXP)

methoxyacetic acid (ISO)

methoxychlor (EXP)

mifepristone (ISO)

N-methyl-4-phenylpyridinium (EXP,ISO)

N-nitrosodiethylamine (EXP)

Nivalenol (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

picoxystrobin (ISO)

progesterone (ISO)

pyrrolidine dithiocarbamate (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sevoflurane (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sulfadimethoxine (EXP)

tamibarotene (ISO)

thimerosal (ISO)

thiram (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA,ISO)

circadian regulation of gene expression (ISO,ISS)

double-strand break repair (IBA,IEA,ISO,ISS)

entrainment of circadian clock by photoperiod (ISO,ISS)

female pregnancy (IEP)

locomotor rhythm (ISO,ISS)

negative regulation of DNA-templated transcription (IEA)

negative regulation of gene expression, epigenetic (IEA,ISO,ISS)

negative regulation of transcription by RNA polymerase II (IBA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of protein autoubiquitination (IEA,ISO,ISS)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA,ISO,ISS)

regulation of DNA-templated transcription (IEA)

response to ionizing radiation (IBA,IEA,ISO,ISS)

rhythmic process (IEA)

secretory granule organization (IDA)

Cellular Component

cytoplasm (IEA,ISO,ISS)

cytoplasmic vesicle (IEA)

cytoskeleton (IEA)

cytosol (IEA,ISO)

endoplasmic reticulum (IDA)

Golgi apparatus (IDA,IEA)

microtubule (IEA,ISO,ISS)

nuclear envelope (IEA,ISO,ISS)

nucleoplasm (IBA,IEA,ISO)

nucleus (IDA,IEA,ISO)

NuRD complex (IBA,IEA,ISO,ISS)

rough endoplasmic reticulum (IEA)

zymogen granule (IEA)

Molecular Function

chromatin binding (IEA)

DNA binding (IEA)

enzyme binding (IPI)

histone deacetylase binding (IBA)

metal ion binding (IEA)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA,ISO,ISS)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

sequence-specific DNA binding (IEA)

transcription coactivator activity (IBA,IEA,ISO,ISS)

transcription corepressor activity (IBA,IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

CHD family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression and Subcellular Localization of Metastasis-Associated Protein 1, Its Short Form, and Estrogen Receptors in Rat Placenta.	Al-Bader MD, etal., Reprod Sci. 2014 Sep 11. pii: 1933719114549851.
2.	The nucleosome remodeling and deacetylase complex in development and disease.	Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	SH3 binding sites of ZG29p mediate an interaction with amylase and are involved in condensation-sorting in the exocrine rat pancreas.	Kleene R, etal., Biochemistry. 2000 Aug 15;39(32):9893-900.
6.	A novel zymogen granule protein (ZG29p) and the nuclear protein MTA1p are differentially expressed by alternative transcription initiation in pancreatic acinar cells of the rat.	Kleene R, etal., J Cell Sci 1999 Aug;112 ( Pt 15):2539-48.
7.	Repression of Six3 by a corepressor regulates rhodopsin expression.	Manavathi B, etal., Proc Natl Acad Sci U S A. 2007 Aug 7;104(32):13128-33. Epub 2007 Jul 31.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	The zinc finger and C-terminal domains of MTA proteins are required for FOG-2-mediated transcriptional repression via the NuRD complex.	Roche AE, etal., J Mol Cell Cardiol. 2008 Feb;44(2):352-60. Epub 2007 Nov 12.
12.	Expression of the MTA1 mRNA in advanced lung cancer.	Sasaki H, etal., Lung Cancer. 2002 Feb;35(2):149-54.
13.	Proteomics profiling of nuclear proteins for kidney fibroblasts suggests hypoxia, meiosis, and cancer may meet in the nucleus.	Shakib K, etal., Proteomics. 2005 Jul;5(11):2819-38.
14.	Analysis of the complete sequence of the novel metastasis-associated candidate gene, mta1, differentially expressed in mammary adenocarcinoma and breast cancer cell lines.	Toh Y, etal., Gene 1995 Jun 14;159(1):97-104.
15.	A novel candidate metastasis-associated gene, mta1, differentially expressed in highly metastatic mammary adenocarcinoma cell lines. cDNA cloning, expression, and protein analyses.	Toh Y, etal., J Biol Chem 1994 Sep 16;269(37):22958-63.

Additional References at PubMed

PMID:11483358	PMID:14760703	PMID:15978591	PMID:16462733	PMID:19805145	PMID:20720167	PMID:21965678	PMID:22926524	PMID:24021429	PMID:24089055	PMID:24413532	PMID:24970816
PMID:24991957	PMID:25315816	PMID:28789814	PMID:32187849

Genomics

Comparative Map Data

Mta1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,999,845 - 138,038,696 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	137,999,915 - 138,038,696 (+)	Ensembl				GRCr8
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	132,178,853 - 132,217,641 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	132,348,104 - 132,386,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,638,410 - 132,676,954 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	132,013,263 - 132,052,041 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,911,302 - 137,950,066 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,924,293 - 137,950,075 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	146,918,915 - 146,944,409 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	138,118,468 - 138,143,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	129,730,599 - 129,756,091 (+)	NCBI		Celera
RGSC_v3.1	6	137,666,187 - 138,150,170 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

MTA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	105,419,827 - 105,470,729 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	105,419,808 - 105,470,737 (+)	Ensembl			hg38	GRCh38
GRCh37	14	105,886,164 - 105,937,066 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	104,957,231 - 105,008,107 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	104,957,410 - 105,008,100	NCBI
Celera	14	85,954,132 - 85,985,842 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	86,101,203 - 86,132,910 (+)	NCBI		HuRef
CHM1_1	14	105,823,945 - 105,873,924 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	99,667,356 - 99,717,871 (+)	NCBI		T2T-CHM13v2.0

Mta1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	113,061,830 - 113,100,826 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	113,061,898 - 113,100,826 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	113,098,248 - 113,137,206 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	113,098,278 - 113,137,206 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	114,336,489 - 114,375,417 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	113,546,127 - 113,588,042 (+)	NCBI		MGSCv36	mm8
Celera	12	114,327,520 - 114,353,049 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.57	NCBI

Mta1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	3,634,341 - 3,671,005 (+)	Ensembl
ChiLan1.0	NW_004955538	3,630,383 - 3,671,005 (+)	NCBI	ChiLan1.0	ChiLan1.0

MTA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	106,595,829 - 106,649,159 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	105,812,331 - 105,865,660 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	86,058,412 - 86,111,736 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	105,852,205 - 105,884,878 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

MTA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,752,894 - 72,772,236 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	72,753,178 - 72,772,762 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	72,253,290 - 72,282,415 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	73,031,055 - 73,060,191 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	73,030,867 - 73,083,556 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	72,711,828 - 72,740,914 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,759,685 - 72,788,744 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	73,151,061 - 73,180,169 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,288,828 - 1,311,966 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	117,785 - 140,926 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	117,785 - 140,917 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTA1
(Sus scrofa - pig)

No map positions available.

MTA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	83,315,917 - 83,368,746 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	70,767,617 - 70,826,482 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mta1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	130,701,756 - 130,740,378 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mta1
372 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	382
Count of miRNA genes:	187
Interacting mature miRNAs:	214
Transcripts:	ENSRNOT00000006521, ENSRNOT00000046456
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	131392689	143944780	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ132046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U02522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006521 ⟹ ENSRNOP00000006521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,999,915 - 138,038,696 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,178,853 - 132,217,641 (+)	Ensembl
Rnor_6.0 Ensembl	6	137,924,293 - 137,950,075 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000046456 ⟹ ENSRNOP00000051141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	138,012,965 - 138,038,696 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,191,908 - 132,217,641 (+)	Ensembl
Rnor_6.0 Ensembl	6	137,924,568 - 137,950,066 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096549 ⟹ ENSRNOP00000084698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,999,915 - 138,038,696 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,190,426 - 132,217,641 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109546 ⟹ ENSRNOP00000095736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	138,013,120 - 138,038,696 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,190,426 - 132,217,641 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112035 ⟹ ENSRNOP00000076373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,999,975 - 138,038,653 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,178,853 - 132,217,641 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115942 ⟹ ENSRNOP00000093477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,999,915 - 138,038,696 (+)	Ensembl
mRatBN7.2 Ensembl	6	132,190,426 - 132,217,623 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118557 ⟹ ENSRNOP00000080347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	132,190,426 - 132,217,638 (+)	Ensembl

RefSeq Acc Id:

NM_022588 ⟹ NP_072110

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,915 - 138,038,696 (+)	NCBI
mRatBN7.2	6	132,178,853 - 132,217,641 (+)	NCBI
Rnor_6.0	6	137,911,302 - 137,950,066 (+)	NCBI
Rnor_5.0	6	146,918,915 - 146,944,409 (+)	NCBI
RGSC_v3.4	6	138,118,468 - 138,143,983 (+)	RGD
Celera	6	129,730,599 - 129,756,091 (+)	RGD

Sequence:

show sequence

CCGCCGGCGCCCCCGCGCCCGCCCCCGCCCCGGCCCGCGCCCGGCCCGCCGCCCGCGCCCGCGC
CCCGCGCCCGCGGCCCCGCCGCCGGCCCGGACATGGCCGCCAACATGTACAGGGTCGGAGACTA
TGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGATCCGCAGGATTGAAGAGCTGAATAAG
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCA
GCCTCATCGCGCTGGCTGACAAGCATGCAACCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGC
GGACACCGGCGAGGAAGGGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTAGACCTGCCT
GAGAAACTTAAGCACCAGCTGCGGCATCGGGAACTGTTCCTCTCTCGGCAGTTGGAGTCTCTGC
CTGCCACCCACATCAGGGGCAAGTGCAGTGTTACCCTGCTCAATGAGACCGAGTCACTCAAGTC
CTACCTGGAGCGTGAGGATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTC
CTGGCTGATAAAGGCGAAATTCGTGTAGGGAACCGGTACCAGGCTGACATCACTGATTTGCTGA
AAGACGGTGAGGAGGACGGCCGCGATCAGTCGAAGCTGGAGACCAAGGTGTGGGAAGCCCACAA
TCCACTTGTAGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCGCTCTGTGGGTACCTTTGCA
CGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCCGCAGCCT
CCCGAGACATCACCCTGTTTCATGCCATGGACACGCTGCACAAGAACATCTACGACATCTCCAA
GGCCATCTCTGCCCTTGTGCCTCAGGGTGGGCCAGTGCTCTGCAGGGATGAGATGGAGGAGTGG
TCAGCATCAGAAGCCAACCTTTTTGAGGAAGCTCTGGAAAAATATGGGAAAGATTTCACAGACA
TTCAGCAAGACTTTCTCCCATGGAAGTCGCTCACCAGCATCATTGAGTATTACTACATGTGGAA
GACCACCGACAGATACGTCCAGCAGAAACGTTTGAAAGCAGCTGAAGCAGAGAGCAAGTTAAAG
CAGGTTTATATTCCCAACTATAACAAGCCAAACCCAAACCAGATCAGCGTCAACAGTGTCAAGG
CCAGTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAG
CTGTTACACCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAGTGTCGCCTC
TGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATG
GAGAGAGGCCGGGACCAAACCGCAATAACATGAGTCCCCATGGCATCCCAGCTCGGAGCAGTGG
GAGCCCCAAGTTTGCCATGAAGACAAGGCAGGCCTTCTACCTGCATACTACCAAGTTGACACGC
ATTGCCCGGCGCTTGTGCCGTGAGATCCTACGCCCATGGCATGCCGCACGCCACCCCTACATGC
CCATCAACAGTGCAGCAATCAAGGCTGAATGCACAGCACGGCTGCCCGAAGCTTCCCAGAGCCC
ACTGGTGCTGAAGCAGGTAGTACGGAAGCCCCTGGAGGCTGTGCTCCGGTATCTTGAGACTCAT
CCCCGCCCGCCTAAGCCCGACCCTGTGAAGAGCTCATCCAGTGTGCTCAGCAGTCTGACCCCTG
CCAAGTCAGCCCCTGTCATCAACAATGGCTCCCCTACCATCTTGGGCAAGAGGAGCTATGAGCA
GCACAATGGGGTAGATGGTCTGGCAAACCATGGACAGACCAGGCACATGGGACCAAGTCGGAAT
CTCCTGCTCAATGGGAAGTCCTACCCCACCAAAGTGCGCCTAATCCGAGGCGGCTCCCTGCCTC
CAGTCAAGCGGCGGCGGATGAACTGGATTGACGCCCCAGATGATGTATTTTACATGGCCACCGA
GGAGACCAGGAAAATCCGAAAGCTGCTCTCATCTTCAGAAACCAAGCGTGCTGCCCGCCGGCCC
TACAAGCCTATTGCCCTGCGCCAGAGCCAGGCCCTGCCGCTGCGGCCACCCCCACCTGCACCAG
TCAATGATGAGCCCATTGTTATTGAGGACTAGGCGGTCACCCACAGTGGCCTGCCTGGGCCCCT
CCATCAGCCCCAGAGTATCCAGTGAGGCCTGCAGAGGCCAAGCGGCCTCCCTCCCCCACCAGAC
TGCTGCCCACCCCACCCTCTGTTTCCGTAGTGCCCCAACTCCCGCCCTCACATGCAGAGAAACT
GCTCCTCTGGTGGACATGCGGGGGAAGAAGTGTGGTCTAACTTATTCCAAGACACCGAGGAGTC
TTTTTTAGCTTTGTGTTTACTTTCTGGCTGGAGCAGAGATGAGGAGTGCCCTGGGCCGTGGGCT
GCAGGGCTTCTCAGCTGGGGTGGGCTCTAAGGTTTTGTTGTGTTCTGTTGAAGGTGCCATTTTA
AATTTTATTTTTATTACTTTTTTGTAGATGAACTTGAGCTCTGTAACTTACACCTGGAATGTTA
GGATTGGTGCAGCCAGCAGCGGCCAAGCTGCCTGGCAGGGTTGGTCCCTTGTCTTTTCAAGTAA
TTTTCATATTAAACAAAAACAAAGAAAAAAATCTCATAAAAAGGAAAACCCCA

hide sequence

RefSeq Acc Id:

XM_039112879 ⟹ XP_038968807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,845 - 138,038,696 (+)	NCBI
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI

RefSeq Acc Id:

XM_039112882 ⟹ XP_038968810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,845 - 138,038,696 (+)	NCBI
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI

RefSeq Acc Id:

XM_039112884 ⟹ XP_038968812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,874 - 138,038,696 (+)	NCBI
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI

RefSeq Acc Id:

XM_039112885 ⟹ XP_038968813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,871 - 138,038,696 (+)	NCBI
mRatBN7.2	6	132,178,608 - 132,217,641 (+)	NCBI

RefSeq Acc Id:

XM_039112886 ⟹ XP_038968814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,845 - 138,032,637 (+)	NCBI
mRatBN7.2	6	132,178,608 - 132,211,584 (+)	NCBI

RefSeq Acc Id:

XM_063262447 ⟹ XP_063118517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,999,867 - 138,038,696 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418324	(Get FASTA)	NCBI Sequence Viewer
	NP_001418325	(Get FASTA)	NCBI Sequence Viewer
	NP_001418360	(Get FASTA)	NCBI Sequence Viewer
	NP_072110	(Get FASTA)	NCBI Sequence Viewer
	XP_038968807	(Get FASTA)	NCBI Sequence Viewer
	XP_038968810	(Get FASTA)	NCBI Sequence Viewer
	XP_038968812	(Get FASTA)	NCBI Sequence Viewer
	XP_038968813	(Get FASTA)	NCBI Sequence Viewer
	XP_038968814	(Get FASTA)	NCBI Sequence Viewer
	XP_063118517	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA82722	(Get FASTA)	NCBI Sequence Viewer
	CAB38718	(Get FASTA)	NCBI Sequence Viewer
	EDL97401	(Get FASTA)	NCBI Sequence Viewer
	EDL97402	(Get FASTA)	NCBI Sequence Viewer
	EDL97403	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006521
	ENSRNOP00000076373
	ENSRNOP00000084698
GenBank Protein	Q62599	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_072110 ⟸ NM_022588

- UniProtKB:

Q9Z0N8 (UniProtKB/Swiss-Prot), Q62599 (UniProtKB/Swiss-Prot), F1LQS1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAANMYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCFYRRRDISSSLIALADKHAT
LSVCYRAGPGADTGEEGEVEEEVENPEMVDLPEKLKHQLRHRELFLSRQLESLPATHIRGKCSV
TLLNETESLKSYLEREDFFFYSLVYDPQQKTLLADKGEIRVGNRYQADITDLLKDGEEDGRDQS
KLETKVWEAHNPLVDKQIDQFLVVARSVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMD
TLHKNIYDISKAISALVPQGGPVLCRDEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSL
TSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQVYIPNYNKPNPNQISVNSVKASVVNGTGTPG
QSPGAGRACESCYTTQSYQWYSWGPPNMQCRLCASCWTYWKKYGGLKMPTRLDGERPGPNRNNM
SPHGIPARSSGSPKFAMKTRQAFYLHTTKLTRIARRLCREILRPWHAARHPYMPINSAAIKAEC
TARLPEASQSPLVLKQVVRKPLEAVLRYLETHPRPPKPDPVKSSSSVLSSLTPAKSAPVINNGS
PTILGKRSYEQHNGVDGLANHGQTRHMGPSRNLLLNGKSYPTKVRLIRGGSLPPVKRRRMNWID
APDDVFYMATEETRKIRKLLSSSETKRAARRPYKPIALRQSQALPLRPPPPAPVNDEPIVIED

hide sequence

Ensembl Acc Id:

ENSRNOP00000006521 ⟸ ENSRNOT00000006521

Ensembl Acc Id:

ENSRNOP00000051141 ⟸ ENSRNOT00000046456

RefSeq Acc Id:	XP_038968807 ⟸ XM_039112879
- Peptide Label:	isoform X1
- UniProtKB:	F1LQS1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968810 ⟸ XM_039112882
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968812 ⟸ XM_039112884
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038968813 ⟸ XM_039112885
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038968814 ⟸ XM_039112886
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000080347 ⟸ ENSRNOT00000118557

Ensembl Acc Id:

ENSRNOP00000076373 ⟸ ENSRNOT00000112035

Ensembl Acc Id:

ENSRNOP00000093477 ⟸ ENSRNOT00000115942

Ensembl Acc Id:

ENSRNOP00000095736 ⟸ ENSRNOT00000109546

Ensembl Acc Id:

ENSRNOP00000084698 ⟸ ENSRNOT00000096549

RefSeq Acc Id:	XP_063118517 ⟸ XM_063262447
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZPI0 (UniProtKB/TrEMBL)

Protein Domains

BAH ELM2 SANT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62599-F1-model_v2	AlphaFold	Q62599	1-703	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621018	AgrOrtholog
BioCyc Gene	G2FUF-35763	BioCyc
Ensembl Genes	ENSRNOG00000004711	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000006521	ENTREZGENE
	ENSRNOT00000096549	ENTREZGENE
	ENSRNOT00000112035	ENTREZGENE
Gene3D-CATH	2.30.30.490	UniProtKB/Swiss-Prot
	4.10.1240.50	UniProtKB/Swiss-Prot
	Homeodomain-like	UniProtKB/Swiss-Prot
InterPro	BAH_dom	UniProtKB/Swiss-Prot
	BAH_sf	UniProtKB/Swiss-Prot
	ELM2_dom	UniProtKB/Swiss-Prot
	Homeobox-like_sf	UniProtKB/Swiss-Prot
	MIER/MTA	UniProtKB/Swiss-Prot
	MTA1_R1	UniProtKB/Swiss-Prot
	SANT/Myb	UniProtKB/Swiss-Prot
	SANT_dom	UniProtKB/Swiss-Prot
	Znf_GATA	UniProtKB/Swiss-Prot
KEGG Report	rno:64520	UniProtKB/Swiss-Prot
NCBI Gene	64520	ENTREZGENE
PANTHER	METASTASIS-ASSOCIATED PROTEIN MTA1	UniProtKB/Swiss-Prot
	PTHR10865	UniProtKB/Swiss-Prot
Pfam	BAH	UniProtKB/Swiss-Prot
	ELM2	UniProtKB/Swiss-Prot
	GATA	UniProtKB/Swiss-Prot
	MTA_R1	UniProtKB/Swiss-Prot
	Myb_DNA-binding	UniProtKB/Swiss-Prot
PhenoGen	Mta1	PhenoGen
PROSITE	BAH	UniProtKB/Swiss-Prot
	ELM2	UniProtKB/Swiss-Prot
	SANT	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004711	RatGTEx
SMART	BAH	UniProtKB/Swiss-Prot
	ELM2	UniProtKB/Swiss-Prot
	SANT	UniProtKB/Swiss-Prot
	ZnF_GATA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot
UniProt	A0A140TA98_RAT	UniProtKB/TrEMBL
	A0A8I5XZU2_RAT	UniProtKB/TrEMBL
	A0A8I5ZPI0	ENTREZGENE
	A0A8I6A1S8_RAT	UniProtKB/TrEMBL
	A0A8I6AHP2_RAT	UniProtKB/TrEMBL
	A0A8I6AM20_RAT	UniProtKB/TrEMBL
	A6KBX8_RAT	UniProtKB/TrEMBL
	A6KBY0_RAT	UniProtKB/TrEMBL
	F1LQS1	ENTREZGENE, UniProtKB/TrEMBL
	MTA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9Z0N8	ENTREZGENE
UniProt Secondary	Q9Z0N8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Mta1	metastasis associated 1			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Mta1	metastasis associated 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the nucleus	729214
gene_domains	contains a Pro-rich stretch and a SH3-binding motif	728998

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - CTD

RGD Manual Annotations