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Gene: Hdlbp (high density lipoprotein binding protein) Rattus norvegicus

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Symbol:

Hdlbp

Name:

high density lipoprotein binding protein

RGD ID:

620962

Description:

Predicted to enable mRNA binding activity. Predicted to be involved in cholesterol metabolic process and lipid transport. Predicted to be located in cytoplasm and nucleus. Predicted to be part of high-density lipoprotein particle. Orthologous to human HDLBP (high density lipoprotein binding protein); INTERACTS WITH 1,2,4-trimethylbenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

HDL-binding protein; high density lipoprotein binding protein (vigilin); high density lipoprotein-binding protein; lipoprotein-binding protein; MGC124559; vigilin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HDLBP (high density lipoprotein binding protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Hdlbp (high density lipoprotein (HDL) binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hdlbp (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HDLBP (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HDLBP (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hdlbp (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HDLBP (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HDLBP (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hdlbp (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Hdlbp (high density lipoprotein binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	HDLBP (high density lipoprotein binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	HDLBP (high density lipoprotein binding protein)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hdlbp (high density lipoprotein (HDL) binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hdlbpa (high density lipoprotein binding protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SCP160	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Dp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vgln-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hdlbp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hdlbp	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	101,395,491 - 101,465,446 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	101,397,305 - 101,465,379 (-)	Ensembl				GRCr8
mRatBN7.2	9	93,948,099 - 94,018,040 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	93,949,913 - 94,018,048 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	102,385,425 - 102,453,504 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	107,521,516 - 107,589,339 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	105,877,661 - 105,945,485 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	100,554,574 - 100,624,707 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	100,554,563 - 100,624,638 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	100,207,602 - 100,277,717 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	92,687,612 - 92,755,853 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	91,484,527 - 91,552,602 (-)	NCBI		Celera
RGSC_v3.1	9	92,892,384 - 92,960,622 (-)	NCBI
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

chromosome 2q37 deletion syndrome (ISO)

COVID-19 (ISO)

Fine-Lubinsky Syndrome (ISO)

Neoplastic Processes (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2,4-trimethylbenzene (EXP)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

glafenine (EXP)

indometacin (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

Mesaconitine (EXP)

methidathion (ISO)

methylmercury chloride (ISO)

N-nitrosomorpholine (EXP)

Nivalenol (ISO)

ochratoxin A (EXP)

ozone (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

phenobarbital (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

senecionine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thapsigargin (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cholesterol metabolic process (IEA)

lipid metabolic process (IEA)

lipid transport (IEA)

steroid metabolic process (IEA)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IEA,ISO)

high-density lipoprotein particle (IEA)

nuclear body (IEA,ISO)

nucleus (IEA)

Molecular Function

mRNA binding (IBA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression of high density lipoprotein-binding protein messenger ribonucleic acid in the rat ovary and its regulation by gonadotropin.	Chen Z and Menon KM, Endocrinology 1994 Jun;134(6):2360-6.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16396499	PMID:22658674	PMID:22681889	PMID:25468996

Genomics

Comparative Map Data

Hdlbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	101,395,491 - 101,465,446 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	101,397,305 - 101,465,379 (-)	Ensembl				GRCr8
mRatBN7.2	9	93,948,099 - 94,018,040 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	93,949,913 - 94,018,048 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	102,385,425 - 102,453,504 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	107,521,516 - 107,589,339 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	105,877,661 - 105,945,485 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	100,554,574 - 100,624,707 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	100,554,563 - 100,624,638 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	100,207,602 - 100,277,717 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	92,687,612 - 92,755,853 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	91,484,527 - 91,552,602 (-)	NCBI		Celera
RGSC_v3.1	9	92,892,384 - 92,960,622 (-)	NCBI
Cytogenetic Map	9	q36	NCBI

HDLBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	241,227,291 - 241,315,672 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	241,227,264 - 241,317,061 (-)	Ensembl			hg38	GRCh38
GRCh37	2	242,166,706 - 242,255,087 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	241,815,352 - 241,903,927 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	241,888,133 - 241,932,241	NCBI
Celera	2	235,835,975 - 235,924,726 (-)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	233,922,808 - 234,011,018 (-)	NCBI		HuRef
CHM1_1	2	242,172,732 - 242,261,199 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	241,726,284 - 241,814,658 (-)	NCBI		T2T-CHM13v2.0

Hdlbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	93,333,662 - 93,406,639 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	93,333,662 - 93,406,537 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	93,405,940 - 93,478,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	93,405,940 - 93,478,815 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	95,302,517 - 95,375,385 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	95,236,346 - 95,309,214 (-)	NCBI		MGSCv36	mm8
Celera	1	96,350,440 - 96,424,455 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	47.24	NCBI

Hdlbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	444,258 - 510,065 (+)	Ensembl
ChiLan1.0	NW_004955542	444,221 - 505,512 (+)	NCBI	ChiLan1.0	ChiLan1.0

HDLBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	143,931,944 - 144,018,856 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	143,944,949 - 144,033,758 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	128,498,647 - 128,587,305 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	247,293,154 - 247,381,509 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	247,293,154 - 247,335,318 (-)	Ensembl			panPan2	panpan1.1

HDLBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	51,228,194 - 51,296,743 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	51,228,371 - 51,297,942 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	51,440,859 - 51,509,402 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	51,422,608 - 51,491,172 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	51,421,531 - 51,491,227 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	51,270,273 - 51,338,805 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	51,009,812 - 51,078,720 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	51,286,338 - 51,354,867 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hdlbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	192,612,285 - 192,664,427 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936745	555,710 - 607,135 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936745	555,020 - 608,572 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HDLBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	139,957,715 - 140,022,302 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	139,957,703 - 140,025,336 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	155,072,247 - 155,103,227 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HDLBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	127,289,390 - 127,378,895 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	127,288,331 - 127,378,986 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	72,000,419 - 72,092,269 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hdlbp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	5,278,695 - 5,340,818 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624847	5,278,695 - 5,341,333 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hdlbp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	165,340,391 - 165,410,633 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hdlbp
627 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	66
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000051155
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	86720043	110356905	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	85262459	109044727	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Markers in Region

BF386813

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	93,989,523 - 93,989,702 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	100,596,000 - 100,596,178	NCBI	Rnor6.0
Rnor_5.0	9	100,249,033 - 100,249,211	UniSTS	Rnor5.0
RGSC_v3.4	9	92,727,269 - 92,727,447	UniSTS	RGSC3.4
Celera	9	91,524,235 - 91,524,413	UniSTS
RH 3.4 Map	9	814.4	UniSTS
Cytogenetic Map	9	q36	UniSTS

BE103142

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	93,996,122 - 93,996,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	100,602,762 - 100,602,920	NCBI	Rnor6.0
Rnor_5.0	9	100,255,795 - 100,255,953	UniSTS	Rnor5.0
RGSC_v3.4	9	92,733,977 - 92,734,135	UniSTS	RGSC3.4
Celera	9	91,530,720 - 91,530,878	UniSTS
RH 3.4 Map	9	801.9	UniSTS
Cytogenetic Map	9	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_172039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC063147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U90725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000051155 ⟹ ENSRNOP00000048476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	101,397,305 - 101,465,379 (-)	Ensembl
mRatBN7.2 Ensembl	9	93,949,913 - 94,018,048 (-)	Ensembl
Rnor_6.0 Ensembl	9	100,556,392 - 100,624,638 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085448 ⟹ ENSRNOP00000074707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	101,397,305 - 101,465,379 (-)	Ensembl
mRatBN7.2 Ensembl	9	93,949,913 - 94,018,048 (-)	Ensembl
Rnor_6.0 Ensembl	9	100,554,563 - 100,588,951 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086433 ⟹ ENSRNOP00000073716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	101,416,985 - 101,433,178 (-)	Ensembl
mRatBN7.2 Ensembl	9	93,969,600 - 93,985,793 (-)	Ensembl
Rnor_6.0 Ensembl	9	100,576,070 - 100,592,271 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103860 ⟹ ENSRNOP00000090589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	101,397,305 - 101,465,379 (-)	Ensembl
mRatBN7.2 Ensembl	9	93,949,913 - 94,018,048 (-)	Ensembl

RefSeq Acc Id:

NM_172039 ⟹ NP_742036

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,397,301 - 101,465,379 (-)	NCBI
mRatBN7.2	9	93,949,913 - 94,017,999 (-)	NCBI
Rnor_6.0	9	100,556,388 - 100,624,638 (-)	NCBI
Rnor_5.0	9	100,207,602 - 100,277,717 (-)	NCBI
RGSC_v3.4	9	92,687,612 - 92,755,853 (-)	RGD
Celera	9	91,484,527 - 91,552,602 (-)	RGD

Sequence:

show sequence

GGCGTCTTGTTCCTGTTTCGCCACAGTTCCTACCTTATGAGCTTGGATTCCTCACGCTAATAAA
AGAGGAGCAGTAAAAGCTGGCAGGCTGACAGAGGCAACCTCAGGACGGACTTTCTGGCTACTGA
CCATTTTGCTGTGTCTTACTAGGATTGTGTGTGGACGTGAGATCAACCATGAGCTCCGTTGCAG
TTTTGACCCAAGAGAGTTTTGCTGAACATCGAAGTGGGCTGGTTCCACAACAAATCAAAGTTGC
CACATTAAATTCAGAAGAGGAAAGTGACCCTCCAACCTACAAGGATGCCTTCCCTCCACTGCCT
GAGAAAGCAGCTTGCTTGGAAAGTGCCCAAGAACCTGCTGGAGCCTGGAGTAACAAGATCCGGC
CCATCAAGGCCTCTGTCATCACTCAGGTGTTTCATGTACCCCTGGAGGAGAGAAAATATAAGGA
CATGAACCAGTTTGGAGAAGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAAAGGACTGGT
GCTCACCTGGAGCTCTCTCTGGCTAAAGACCAAGGTCTCTCCATCATGGTCTCAGGGAAGCTGG
ATGCAGTCATGAAAGCCCGGAAAGACATTGTTGCTAGACTACAGACACAGGCCTCAGCCACTGT
TCCCATTCCTAAAGAGCACCACCGCTTTGTTATTGGCAAAAACGGAGAAAAACTACAAGACTTA
GAACTGAAAACTGCAACCAAAATCCAGATCCCACGCCCAGATGACCCCAGTAATCAGATCAAGA
TCACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCATGAGGTCCTTCTGATCTCTGCTGAGCA
GGACAAGCGTGCCGTAGAGAGGCTAGAAGTGGAGAAGGCCTTCCACCCCTTCATCGCTGGGCCG
TACAATAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCA
GTGTTAACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAACAGCTGGCTCAGGCTGTGGCTCG
TATTAAGAAGATTTATGAGGAAAAGAAGAAGAAGACTACGACCATTGCGGTAGAGGTGAAGAAA
TCTCAGCACAAGTATGTCATCGGGCCGAAGGGCAACTCACTGCAAGAGATCCTGGAAAGAACTG
GAGTCTCCGTTGAGATCCCGCCCTCAGACAGCATCTCCGAGACTGTGATACTTAGAGGCGAGCC
TGAAAAGCTGGGACAGGCATTGACTGAAGTCTATGCCAAGGCCAACAGTTTTACAGTCTCCTCA
GTCTCTGCCCCTTCCTGGCTTCACCGTTTCATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAA
TCACTCAGCAAATGCCAAAGGTTCACATTGAGTTCACAGAAGGTGAGGACAAGATCACCCTGGA
GGGCCCCACAGAAGATGTGAATGTAGCCCAGGAACAGATTGAAGGAATGGTCAAAGACCTGATT
AATCGGATGGACTATGTAGAGATCAACATTGACCATAAATTCCACAGACACCTCATTGGGAAGA
GTGGAGCCAACATCAACAGAATCAAAGACCAGTACAAAGTGTCTGTGCGCATCCCCCCTGACAG
CGAGAAGAGTAACCTGATCCGAATTGAGGGAGACCCACAAGGTGTGCAACAGGCCAAGCGGGAG
CTGCTGGAGCTTGCTTCTCGCATGGAAAATGAGCGCACCAAGGATCTAATCATTGAGCAAAGAT
TTCATCGCACAATCATTGGGCAGAAAGGTGAACGGATTCGAGAAATTCGTGACAAATTCCCAGA
GGTGATCATCAACTTTCCGGATCCAGCACAAAAGAGTGAGATTGTTCAACTCAGAGGCCCCAAG
AATGAGGTGGAGAAATGTACCAAGTACATGCAGAAAATGGTTGCAGACCTGGTGGAAAATAGCT
ATTCAATTTCTGTACCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGTGCAAA
CATTAAAAAGATTCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCCGAGAACAGCAACTCG
GAGACCATTGTCATCACTGGCAAGCGAGCCAACTGTGAAGCCGCCCGGAGCCGGATCCTGTCCA
TCCAGAAAGATCTGGCCAACATAGCTGAGGTGGAGGTCTCAATCCCTGCCAAACTACACAACTC
TCTCATTGGCACCAAGGGTCGTCTGATCCGCTCCATCATGGAGGAATGTGGTGGCGTCCATATT
CACTTTCCTGTGGAAGGTTCTGGTAGTGACACTGTTGTCATCAGGGGTCCTTCCTCAGATGTGG
AGAAGGCCAAGAAGCAGCTTCTGCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGA
CATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGCAAG
GTGCGTGACAGTACTGGAGCCCGCATCATATTTCCGGCTGCTGAGGATAAGGACCAGGACCTGA
TAACAATCATAGGAAAGGAAGATGCTGTCCGTGAGGCACAAAAGGAGCTGGAAGCATTGATCCA
GAACCTGGATAATGTGGTTGAAGACTACATGCTGGTGGACCCCAGACACCACCGCCATTTTGTT
ATCCGAAGAGGACAGGTATTACGAGAGATTGCTGAAGAATATGGCGGGGTGATGGTCAGCTTCC
CACGCTCTGGCACACAGAGTGACAAAGTCACTCTCAAGGGTGCCAAAGACTGTGTGGAGGCAGC
CAAGAAGCGAATTCAGGAAATCATTGAGGATCTGGAAGCTCAAGTAACGGTGGAATGTGCTATA
CCCCAGAAGTTTCATCGTTCGGTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGG
ACTACAATGTTCAAATTAAGTTCCCAGACAGAGAGGAAAACCCAGTTCACAGTGTAGAGCCTTC
CATCCAGGAGAATGGAGATGAGGCTGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCGGGCTCT
CCCAGGAGGTGTGACATCATAGTTATCTCTGGCCGGAAAGAGAAATGTGAGGCTGCCAAGGAAG
CCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCACCGCTACAT
CATTGGGCAGAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTTGAGGTGAATATACATGTG
CCAGCCCCCGAACTGCAGTCACACACCATTGCCATCACTGGCCTTGCAGCAAATTTGGACAGGG
CTAAGGCGGGGCTACTGGATCGAGTAAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTTAAG
GAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAAATTATCGGGAGAAAAGGG
GCAGTGATCACACAGATCCGATTGGAACATGATGTGAACATCCAATTTCCTGATAAGGACGATG
GGAATCAGCCCCAGGACCAAATCACCATCACAGGGTATGAGAAGAACACTGAAGCTGCCCGTGA
TGCTATCCTGAAAATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAGGATGTTCCCTTGGATCAC
CGTGTGCATGCCCGAATCATTGGTGCCAGAGGCAAAGCCATCCGGAAAATCATGGATGAGTTCA
AGGTGGACATTCGCTTCCCACAGAGCGGAGCTCCAGACCCTAACTGCGTCACTGTGACAGGACT
CCCGGAGAATGTGGAGGAAGCTATCGACCATATCCTCAACCTAGAAGAGGAATATCTGGCTGAT
GTGGTGGACAGTGAGGCGCTGCAAGTTTACATGAAGCCCCCAGCACATGAAGAGTCCAAGGCAC
CATCCAAAGGCTTTGTGGTGCGAGATGCTCCCTGGACCTCCAACAGCAGTGAGAAGGCTCCTGA
TATGAGCAGCTCTGAAGAATTCCCCAGCTTTGGGGCTCAAGTGGCCCCCAAGACCCTCCCGTGG
GGCCCCAAACGATAATGATCAAAAAGAAACCTTTCCAGCCTGCTGCCCAAACCCAACCACACAA
TGGTTTGTCTCAATCTGACTCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCCCCCTCCCCGA
GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTCTGTGGCTGCTTCCCCAGGCCTGGTCAGCACC
CGCAGGCTCAGGGTCTGCTCCTGACGCTGTGCTCTGGGAAAGGCACGCCACTGCGTGAAACACT
AAGCAAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTGGTCCACCCAGCATGTAGT
CAGCACTCTGACCTTCACAGCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTCATGACC
TCAGGAAATAAATTTCCTTGACTTTATAAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245548 ⟹ XP_006245610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,433,241 (-)	NCBI
mRatBN7.2	9	93,948,103 - 93,985,860 (-)	NCBI
Rnor_6.0	9	100,554,574 - 100,592,315 (-)	NCBI
Rnor_5.0	9	100,207,602 - 100,277,717 (-)	NCBI

Sequence:

show sequence

AGCCTCCGCCCTATATAGCAGCGGCGGCCCCGGCGCCGCGCCTCGGAGCGTCCCGGCTTCTCCC
GCGCAGCGGCAGCGACAGGCGGACAGACTCTCGGGTGGTCACACTCACGATAAAAGCTGGCAGG
CTGACAGAGGCAACCTCAGGACGGACTTTCTGGCTACTGACCATTTTGCTGTGTCTTACTAGGA
TTGTGTGTGGACGTGAGATCAACCATGAGCTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTG
AACATCGAAGTGGGCTGGTTCCACAACAAATCAAAGTTGCCACATTAAATTCAGAAGAGGAAAG
TGACCCTCCAACCTACAAGGATGCCTTCCCTCCACTGCCTGAGAAAGCAGCTTGCTTGGAAAGT
GCCCAAGAACCTGCTGGAGCCTGGAGTAACAAGATCCGGCCCATCAAGGCCTCTGTCATCACTC
AGGTGTTTCATGTACCCCTGGAGGAGAGAAAATATAAGGACATGAACCAGTTTGGAGAAGGTGA
ACAAGCAAAAATCTGCCTTGAGATCATGCAAAGGACTGGTGCTCACCTGGAGCTCTCTCTGGCT
AAAGACCAAGGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGCAGTCATGAAAGCCCGGAAAG
ACATTGTTGCTAGACTACAGACACAGGCCTCAGCCACTGTTCCCATTCCTAAAGAGCACCACCG
CTTTGTTATTGGCAAAAACGGAGAAAAACTACAAGACTTAGAACTGAAAACTGCAACCAAAATC
CAGATCCCACGCCCAGATGACCCCAGTAATCAGATCAAGATCACTGGCACCAAAGAAGGCATCG
AGAAAGCTCGCCATGAGGTCCTTCTGATCTCTGCTGAGCAGGACAAGCGTGCCGTAGAGAGGCT
AGAAGTGGAGAAGGCCTTCCACCCCTTCATCGCTGGGCCGTACAATAGACTTGTGGGTGAAATC
ATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCT
TCACTGGAGAGAAGGAACAGCTGGCTCAGGCTGTGGCTCGTATTAAGAAGATTTATGAGGAAAA
GAAGAAGAAGACTACGACCATTGCGGTAGAGGTGAAGAAATCTCAGCACAAGTATGTCATCGGG
CCGAAGGGCAACTCACTGCAAGAGATCCTGGAAAGAACTGGAGTCTCCGTTGAGATCCCGCCCT
CAGACAGCATCTCCGAGACTGTGATACTTAGAGGCGAGCCTGAAAAGCTGGGACAGGCATTGAC
TGAAGTCTATGCCAAGGCCAACAGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCCTGGCTTCAC
CGTTTCATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGTTC
ACATTGAGTTCACAGAAGGTGAGGACAAGATCACCCTGGAGGGCCCCACAGAAGATGTGAATGT
AGCCCAGGAACAGATTGAAGGAATGGTCAAAGACCTGATTAATCGGATGGACTATGTAGAGATC
AACATTGACCATAAATTCCACAGACACCTCATTGGGAAGAGTGGAGCCAACATCAACAGAATCA
AAGACCAGTACAAAGTGTCTGTGCGCATCCCCCCTGACAGCGAGAAGAGTAACCTGATCCGAAT
TGAGGGAGACCCACAAGGTGTGCAACAGGCCAAGCGGGAGCTGCTGGAGCTTGCTTCTCGCATG
GAAAATGAGCGCACCAAGGATCTAATCATTGAGCAAAGATTTCATCGCACAATCATTGGGCAGA
AAGGTGAACGGATTCGAGAAATTCGTGACAAATTCCCAGAGGTGATCATCAACTTTCCGGATCC
AGCACAAAAGAGTGAGATTGTTCAACTCAGAGGCCCCAAGAATGAGGTGGAGAAATGTACCAAG
TACATGCAGAAAATGGTTGCAGACCTGGTGGAAAATAGCTATTCAATTTCTGTACCGATCTTCA
AACAGTTTCACAAGAATATCATTGGGAAAGGAGGTGCAAACATTAAAAAGATTCGTGAAGAGAG
CAACACCAAGATTGACCTTCCTGCCGAGAACAGCAACTCGGAGACCATTGTCATCACTGGCAAG
CGAGCCAACTGTGAAGCCGCCCGGAGCCGGATCCTGTCCATCCAGAAAGATCTGGCCAACATAG
CTGAGGTGGAGGTCTCAATCCCTGCCAAACTACACAACTCTCTCATTGGCACCAAGGGTCGTCT
GATCCGCTCCATCATGGAGGAATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGGTTCTGGT
AGTGACACTGTTGTCATCAGGGGTCCTTCCTCAGATGTGGAGAAGGCCAAGAAGCAGCTTCTGC
ACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGACATCCGAGCCAAGCCAGAATACCA
CAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGCAAGGTGCGTGACAGTACTGGAGCCCGC
ATCATATTTCCGGCTGCTGAGGATAAGGACCAGGACCTGATAACAATCATAGGAAAGGAAGATG
CTGTCCGTGAGGCACAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGATAATGTGGTTGAAGA
CTACATGCTGGTGGACCCCAGACACCACCGCCATTTTGTTATCCGAAGAGGACAGGTATTACGA
GAGATTGCTGAAGAATATGGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACACAGAGTGACA
AAGTCACTCTCAAGGGTGCCAAAGACTGTGTGGAGGCAGCCAAGAAGCGAATTCAGGAAATCAT
TGAGGATCTGGAAGCTCAAGTAACGGTGGAATGTGCTATACCCCAGAAGTTTCATCGTTCGGTC
ATGGGTCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGACTACAATGTTCAAATTAAGTTCC
CAGACAGAGAGGAAAACCCAGTTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGAGGC
TGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCGGGCTCTCCCAGGAGGTGTGACATCATAGTT
ATCTCTGGCCGGAAAGAGAAATGTGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCA
CCATCGAGGTAGAGGTACCCTTTGATCTTCACCGCTACATCATTGGGCAGAAAGGAAGTGGAAT
CCGCAAGATGATGGATGAGTTTGAGGTGAATATACATGTGCCAGCCCCCGAACTGCAGTCACAC
ACCATTGCCATCACTGGCCTTGCAGCAAATTTGGACAGGGCTAAGGCGGGGCTACTGGATCGAG
TAAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGT
AGACCCCAAATACCATCCCAAAATTATCGGGAGAAAAGGGGCAGTGATCACACAGATCCGATTG
GAACATGATGTGAACATCCAATTTCCTGATAAGGACGATGGGAATCAGCCCCAGGACCAAATCA
CCATCACAGGGTATGAGAAGAACACTGAAGCTGCCCGTGATGCTATCCTGAAAATTGTGGGTGA
GCTTGAGCAGATGGTTTCTGAGGATGTTCCCTTGGATCACCGTGTGCATGCCCGAATCATTGGT
GCCAGAGGCAAAGCCATCCGGAAAATCATGGATGAGTTCAAGGTGGACATTCGCTTCCCACAGA
GCGGAGCTCCAGACCCTAACTGCGTCACTGTGACAGGACTCCCGGAGAATGTGGAGGAAGCTAT
CGACCATATCCTCAACCTAGAAGAGGAATATCTGGCTGATGTGGTGGACAGTGAGGCGCTGCAA
GTTTACATGAAGCCCCCAGCACATGAAGAGTCCAAGGCACCATCCAAAGGCTTTGTGGTGCGAG
ATGCTCCCTGGACCTCCAACAGCAGTGAGAAGGCTCCTGATATGAGCAGCTCTGAAGAATTCCC
CAGCTTTGGGGCTCAAGTGGCCCCCAAGACCCTCCCGTGGGGCCCCAAACGATAATGATCAAAA
AGAAACCTTTCCAGCCTGCTGCCCAAACCCAACCACACAATGGTTTGTCTCAATCTGACTCAGC
AGCTGGACCCTCGTAAATTGTTGATGCTCCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGG
CTGGCCTTCTGTGGCTGCTTCCCCAGGCCTGGTCAGCACCCGCAGGCTCAGGGTCTGCTCCTGA
CGCTGTGCTCTGGGAAAGGCACGCCACTGCGTGAAACACTAAGCAAGGTAATCGAGCATTTCGT
GATCACAGACTCCAGCTTCCTGGTCCACCCAGCATGTAGTCAGCACTCTGACCTTCACAGCAGA
GCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTCATGACCTCAGGAAATAAATTTCCTTGACTT
TATAAAAGCCAAAACGTTTGCCCTCTTCCTTTCCCACCTCCCTCCTGCCCACCACCTGTCGCCC
AGACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGCTT
CAGGATAGGAGGAAGGCATGGTATTGGACAACAAGAGGTCAGATGCCCTGGTGATAGTGGGCTG
AGAGGTAGAGGGTGGCCTGGGTCCTCAGATAGTGCTCACTGTGCCCACTTTGGGTTCTGAAAGC
ATCAGGGGCAGCTTCAGCCTCATGATCCTATATATCTTAGAGGCACAGCTGTGTGTATGCTACT
TGGGTTCCCTGTAACTGTCACAGTGGACTTGGGTGGCTTGAGACTTTGGGGAAAGGGGAGGTAG
AGACTGGCTTTGGTGATGGGGAGGGGGCTCGACCCTAAGTAACAGCTCAACTTTCCCACAACCT
TTTGCCTCTGCCTGCCTTGCCCAGACACCTTGTGTTCATTGCCTTCTTTCTACCTCAGCCAGTG
TGGTAGTACTCTCACGTGGGTTAGTGCCACCCCAAGGCTCTTCTCTTGATGTAGACATTTCCGG
TGATTCTAGGCTTGCCATTGAGTTGAGAGTGGAGGCCAGTGCTTTCCCTCAGGCCACATGATTC
AGGGACTGGGCCAGAGCTGGGTGCTCATTCCCAGCCAGCCTGACCATGTAGGCTCTGGCAGGCA
TAGCCTGGATGCTTATGCAGTCCTGAGGAACAGACTGAAGGGGCAGGTCTCATCAATAGAGGTG
GTCATTTAGCGTGGATTAAAAAGGAAGAATGAAAACAAAAGACCCCGTGCAGGGAGCACTGCTA
GCTGAAGGAGAACTTTTCCTCAGGTACAAGAGTTAATTTTTGGACCACTGGCCTCCAGCTAGCT
TGGCTGCAGGCCAACCTCACCGAGAAGTGGTCCCAAGTTCAGAGGACCCCTGTTAGGCTGTGGA
AACTGAGGACAGATCTTTTATCTCCAGGTCATCTGATAACTAGCAACATGTCCAGTCCCAGATT
CTTGGGTTACTAGAAAAGCCAGCCTGTGCCCATCTCATGGCCTTCCCTGAGAACTGTCACTTCT
ACTATGACACCTTTTCCCCAAGTCTTTCACTCCCCTATTTAATAACTCAGGCTTGGCTACCTGT
CCCCTCTAATCCTCAGTGGATCCAGAATGGCTTTCCCAAGTCTAGCTTCTGTCCCCTGTAGATG
ACAGTCCCACATGTACCCCTTAGAGGAACGGTTCCAAGATGGGAAAGGAACACCTACTTGCTCA
GTAGGCTGGCAGCTGGAGCAGGTGGGTGAGGCGGGGAGAGGGCTCCTGCCTTTACCTGCAGCTG
GCTCTTCTCTCATCTGCATGAGATTGGGGACACCTTGCTTCCCTCCTGCCCCTCCAGCCCCCTC
TTCATCTTCATTGTCATCCTACAACATCCAGTCTCTCCCTTCACCAGAAGGTAAAGTTTAAATT
CTCACCACAGGATCTTGCACATCTCCTTTTATTGCTAAGTCTGTAGATGTTAGCCCTATCCTAA
GCTGTTCAGGGTCTCACTCCTTTTCTCTGATTGTTAATAAGGACTATGAAATTGACTGTACCCA
GGTCACCTCTCTGCAGCCTCCAAGACATTGAGGAGCCTAGGGCAGGGGTGGGGAGTGTCTTTTC
CTCCTTGTTGAATGTCTTCCATGTCCTGTGTTTCCATAGCTACATCCGTCCCTTGGCCTTAACT
TTGGAATTTGGAGATTATATGCAAACATGTGTAAAGGCTCATGAATATGGATGACACTGGAATT
TTATAAATTCTAAAATAAAACCCGAAACCAGACGCA

hide sequence

RefSeq Acc Id:

XM_017596623 ⟹ XP_017452112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,465,441 (-)	NCBI
mRatBN7.2	9	93,948,099 - 93,985,990 (-)	NCBI
Rnor_6.0	9	100,554,574 - 100,592,518 (-)	NCBI

Sequence:

show sequence

TTTCTGGTGACCTCGGCTCTGGCACCTTTGGCTCTGGGGCCTGCCTGTTCTTCATGCCTGTTCT
CTGTAGTAAAAGCTGGCAGGCTGACAGAGGCAACCTCAGGACGGACTTTCTGGCTACTGACCAT
TTTGCTGTGTCTTACTAGGATTGTGTGTGGACGTGAGATCAACCATGAGCTCCGTTGCAGTTTT
GACCCAAGAGAGTTTTGCTGAACATCGAAGTGGGCTGGTTCCACAACAAATCAAAGTTGCCACA
TTAAATTCAGAAGAGGAAAGTGACCCTCCAACCTACAAGGATGCCTTCCCTCCACTGCCTGAGA
AAGCAGCTTGCTTGGAAAGTGCCCAAGAACCTGCTGGAGCCTGGAGTAACAAGATCCGGCCCAT
CAAGGCCTCTGTCATCACTCAGGTGTTTCATGTACCCCTGGAGGAGAGAAAATATAAGGACATG
AACCAGTTTGGAGAAGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAAAGGACTGGTGCTC
ACCTGGAGCTCTCTCTGGCTAAAGACCAAGGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGC
AGTCATGAAAGCCCGGAAAGACATTGTTGCTAGACTACAGACACAGGCCTCAGCCACTGTTCCC
ATTCCTAAAGAGCACCACCGCTTTGTTATTGGCAAAAACGGAGAAAAACTACAAGACTTAGAAC
TGAAAACTGCAACCAAAATCCAGATCCCACGCCCAGATGACCCCAGTAATCAGATCAAGATCAC
TGGCACCAAAGAAGGCATCGAGAAAGCTCGCCATGAGGTCCTTCTGATCTCTGCTGAGCAGGAC
AAGCGTGCCGTAGAGAGGCTAGAAGTGGAGAAGGCCTTCCACCCCTTCATCGCTGGGCCGTACA
ATAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGT
TAACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAACAGCTGGCTCAGGCTGTGGCTCGTATT
AAGAAGATTTATGAGGAAAAGAAGAAGAAGACTACGACCATTGCGGTAGAGGTGAAGAAATCTC
AGCACAAGTATGTCATCGGGCCGAAGGGCAACTCACTGCAAGAGATCCTGGAAAGAACTGGAGT
CTCCGTTGAGATCCCGCCCTCAGACAGCATCTCCGAGACTGTGATACTTAGAGGCGAGCCTGAA
AAGCTGGGACAGGCATTGACTGAAGTCTATGCCAAGGCCAACAGTTTTACAGTCTCCTCAGTCT
CTGCCCCTTCCTGGCTTCACCGTTTCATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAATCAC
TCAGCAAATGCCAAAGGTTCACATTGAGTTCACAGAAGGTGAGGACAAGATCACCCTGGAGGGC
CCCACAGAAGATGTGAATGTAGCCCAGGAACAGATTGAAGGAATGGTCAAAGACCTGATTAATC
GGATGGACTATGTAGAGATCAACATTGACCATAAATTCCACAGACACCTCATTGGGAAGAGTGG
AGCCAACATCAACAGAATCAAAGACCAGTACAAAGTGTCTGTGCGCATCCCCCCTGACAGCGAG
AAGAGTAACCTGATCCGAATTGAGGGAGACCCACAAGGTGTGCAACAGGCCAAGCGGGAGCTGC
TGGAGCTTGCTTCTCGCATGGAAAATGAGCGCACCAAGGATCTAATCATTGAGCAAAGATTTCA
TCGCACAATCATTGGGCAGAAAGGTGAACGGATTCGAGAAATTCGTGACAAATTCCCAGAGGTG
ATCATCAACTTTCCGGATCCAGCACAAAAGAGTGAGATTGTTCAACTCAGAGGCCCCAAGAATG
AGGTGGAGAAATGTACCAAGTACATGCAGAAAATGGTTGCAGACCTGGTGGAAAATAGCTATTC
AATTTCTGTACCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGTGCAAACATT
AAAAAGATTCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCCGAGAACAGCAACTCGGAGA
CCATTGTCATCACTGGCAAGCGAGCCAACTGTGAAGCCGCCCGGAGCCGGATCCTGTCCATCCA
GAAAGATCTGGCCAACATAGCTGAGGTGGAGGTCTCAATCCCTGCCAAACTACACAACTCTCTC
ATTGGCACCAAGGGTCGTCTGATCCGCTCCATCATGGAGGAATGTGGTGGCGTCCATATTCACT
TTCCTGTGGAAGGTTCTGGTAGTGACACTGTTGTCATCAGGGGTCCTTCCTCAGATGTGGAGAA
GGCCAAGAAGCAGCTTCTGCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGACATC
CGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGCAAGGTGC
GTGACAGTACTGGAGCCCGCATCATATTTCCGGCTGCTGAGGATAAGGACCAGGACCTGATAAC
AATCATAGGAAAGGAAGATGCTGTCCGTGAGGCACAAAAGGAGCTGGAAGCATTGATCCAGAAC
CTGGATAATGTGGTTGAAGACTACATGCTGGTGGACCCCAGACACCACCGCCATTTTGTTATCC
GAAGAGGACAGGTATTACGAGAGATTGCTGAAGAATATGGCGGGGTGATGGTCAGCTTCCCACG
CTCTGGCACACAGAGTGACAAAGTCACTCTCAAGGGTGCCAAAGACTGTGTGGAGGCAGCCAAG
AAGCGAATTCAGGAAATCATTGAGGATCTGGAAGCTCAAGTAACGGTGGAATGTGCTATACCCC
AGAAGTTTCATCGTTCGGTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGACTA
CAATGTTCAAATTAAGTTCCCAGACAGAGAGGAAAACCCAGTTCACAGTGTAGAGCCTTCCATC
CAGGAGAATGGAGATGAGGCTGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCGGGCTCTCCCA
GGAGGTGTGACATCATAGTTATCTCTGGCCGGAAAGAGAAATGTGAGGCTGCCAAGGAAGCCCT
GGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCACCGCTACATCATT
GGGCAGAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTTGAGGTGAATATACATGTGCCAG
CCCCCGAACTGCAGTCACACACCATTGCCATCACTGGCCTTGCAGCAAATTTGGACAGGGCTAA
GGCGGGGCTACTGGATCGAGTAAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTTAAGGAGT
TTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAAATTATCGGGAGAAAAGGGGCAG
TGATCACACAGATCCGATTGGAACATGATGTGAACATCCAATTTCCTGATAAGGACGATGGGAA
TCAGCCCCAGGACCAAATCACCATCACAGGGTATGAGAAGAACACTGAAGCTGCCCGTGATGCT
ATCCTGAAAATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAGGATGTTCCCTTGGATCACCGTG
TGCATGCCCGAATCATTGGTGCCAGAGGCAAAGCCATCCGGAAAATCATGGATGAGTTCAAGGT
GGACATTCGCTTCCCACAGAGCGGAGCTCCAGACCCTAACTGCGTCACTGTGACAGGACTCCCG
GAGAATGTGGAGGAAGCTATCGACCATATCCTCAACCTAGAAGAGGAATATCTGGCTGATGTGG
TGGACAGTGAGGCGCTGCAAGTTTACATGAAGCCCCCAGCACATGAAGAGTCCAAGGCACCATC
CAAAGGCTTTGTGGTGCGAGATGCTCCCTGGACCTCCAACAGCAGTGAGAAGGCTCCTGATATG
AGCAGCTCTGAAGAATTCCCCAGCTTTGGGGCTCAAGTGGCCCCCAAGACCCTCCCGTGGGGCC
CCAAACGATAATGATCAAAAAGAAACCTTTCCAGCCTGCTGCCCAAACCCAACCACACAATGGT
TTGTCTCAATCTGACTCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCCCCCTCCCCGAGGTC
TCGCAGCAAAGCCTGGTGGGCTGGCCTTCTGTGGCTGCTTCCCCAGGCCTGGTCAGCACCCGCA
GGCTCAGGGTCTGCTCCTGACGCTGTGCTCTGGGAAAGGCACGCCACTGCGTGAAACACTAAGC
AAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTGGTCCACCCAGCATGTAGTCAGC
ACTCTGACCTTCACAGCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTCATGACCTCAG
GAAATAAATTTCCTTGACTTTATAAAAGCCAAAACGTTTGCCCTCTTCCTTTCCCACCTCCCTC
CTGCCCACCACCTGTCGCCCAGACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAA
AATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATTGGACAACAAGAGGTCAGAT
GCCCTGGTGATAGTGGGCTGAGAGGTAGAGGGTGGCCTGGGTCCTCAGATAGTGCTCACTGTGC
CCACTTTGGGTTCTGAAAGCATCAGGGGCAGCTTCAGCCTCATGATCCTATATATCTTAGAGGC
ACAGCTGTGTGTATGCTACTTGGGTTCCCTGTAACTGTCACAGTGGACTTGGGTGGCTTGAGAC
TTTGGGGAAAGGGGAGGTAGAGACTGGCTTTGGTGATGGGGAGGGGGCTCGACCCTAAGTAACA
GCTCAACTTTCCCACAACCTTTTGCCTCTGCCTGCCTTGCCCAGACACCTTGTGTTCATTGCCT
TCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCACGTGGGTTAGTGCCACCCCAAGGCTCTTCT
CTTGATGTAGACATTTCCGGTGATTCTAGGCTTGCCATTGAGTTGAGAGTGGAGGCCAGTGCTT
TCCCTCAGGCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGCTCATTCCCAGCCAGCCTGAC
CATGTAGGCTCTGGCAGGCATAGCCTGGATGCTTATGCAGTCCTGAGGAACAGACTGAAGGGGC
AGGTCTCATCAATAGAGGTGGTCATTTAGCGTGGATTAAAAAGGAAGAATGAAAACAAAAGACC
CCGTGCAGGGAGCACTGCTAGCTGAAGGAGAACTTTTCCTCAGGTACAAGAGTTAATTTTTGGA
CCACTGGCCTCCAGCTAGCTTGGCTGCAGGCCAACCTCACCGAGAAGTGGTCCCAAGTTCAGAG
GACCCCTGTTAGGCTGTGGAAACTGAGGACAGATCTTTTATCTCCAGGTCATCTGATAACTAGC
AACATGTCCAGTCCCAGATTCTTGGGTTACTAGAAAAGCCAGCCTGTGCCCATCTCATGGCCTT
CCCTGAGAACTGTCACTTCTACTATGACACCTTTTCCCCAAGTCTTTCACTCCCCTATTTAATA
ACTCAGGCTTGGCTACCTGTCCCCTCTAATCCTCAGTGGATCCAGAATGGCTTTCCCAAGTCTA
GCTTCTGTCCCCTGTAGATGACAGTCCCACATGTACCCCTTAGAGGAACGGTTCCAAGATGGGA
AAGGAACACCTACTTGCTCAGTAGGCTGGCAGCTGGAGCAGGTGGGTGAGGCGGGGAGAGGGCT
CCTGCCTTTACCTGCAGCTGGCTCTTCTCTCATCTGCATGAGATTGGGGACACCTTGCTTCCCT
CCTGCCCCTCCAGCCCCCTCTTCATCTTCATTGTCATCCTACAACATCCAGTCTCTCCCTTCAC
CAGAAGGTAAAGTTTAAATTCTCACCACAGGATCTTGCACATCTCCTTTTATTGCTAAGTCTGT
AGATGTTAGCCCTATCCTAAGCTGTTCAGGGTCTCACTCCTTTTCTCTGATTGTTAATAAGGAC
TATGAAATTGACTGTACCCAGGTCACCTCTCTGCAGCCTCCAAGACATTGAGGAGCCTAGGGCA
GGGGTGGGGAGTGTCTTTTCCTCCTTGTTGAATGTCTTCCATGTCCTGTGTTTCCATAGCTACA
TCCGTCCCTTGGCCTTAACTTTGGAATTTGGAGATTATATGCAAACATGTGTAAAGGCTCATGA
ATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACCCGAAACCAGACGCA

hide sequence

RefSeq Acc Id:

XM_017596624 ⟹ XP_017452113

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,448,024 (-)	NCBI
mRatBN7.2	9	93,948,099 - 94,018,040 (-)	NCBI
Rnor_6.0	9	100,554,574 - 100,624,707 (-)	NCBI

Sequence:

show sequence

CGGCGGTTGGCCATATAGAGGCTGGGGGCGGGGGGAGGTCAAGCGTAGCCTCTTCTCCTTTACC
AAGATGGCGTCTTGTTCCTGTTTCGCCACAGTTCCTACCTTATGAGCTTGGATTCCTCACGCTA
ATAAAAGAGGAGCAGGAACTTTGACAAATAAAAGCTGGCAGGCTGACAGAGGCAACCTCAGGAC
GGACTTTCTGGCTACTGACCATTTTGCTGTGTCTTACTAGGATTGTGTGTGGACGTGAGATCAA
CCATGAGCTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAACATCGAAGTGGGCTGGTTCC
ACAACAAATCAAAGTTGCCACATTAAATTCAGAAGAGGAAAGTGACCCTCCAACCTACAAGGAT
GCCTTCCCTCCACTGCCTGAGAAAGCAGCTTGCTTGGAAAGTGCCCAAGAACCTGCTGGAGCCT
GGAGTAACAAGATCCGGCCCATCAAGGCCTCTGTCATCACTCAGGTGTTTCATGTACCCCTGGA
GGAGAGAAAATATAAGGACATGAACCAGTTTGGAGAAGGTGAACAAGCAAAAATCTGCCTTGAG
ATCATGCAAAGGACTGGTGCTCACCTGGAGCTCTCTCTGGCTAAAGACCAAGGTCTCTCCATCA
TGGTCTCAGGGAAGCTGGATGCAGTCATGAAAGCCCGGAAAGACATTGTTGCTAGACTACAGAC
ACAGGCCTCAGCCACTGTTCCCATTCCTAAAGAGCACCACCGCTTTGTTATTGGCAAAAACGGA
GAAAAACTACAAGACTTAGAACTGAAAACTGCAACCAAAATCCAGATCCCACGCCCAGATGACC
CCAGTAATCAGATCAAGATCACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCATGAGGTCCT
TCTGATCTCTGCTGAGCAGGACAAGCGTGCCGTAGAGAGGCTAGAAGTGGAGAAGGCCTTCCAC
CCCTTCATCGCTGGGCCGTACAATAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAA
TCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAACAGCT
GGCTCAGGCTGTGGCTCGTATTAAGAAGATTTATGAGGAAAAGAAGAAGAAGACTACGACCATT
GCGGTAGAGGTGAAGAAATCTCAGCACAAGTATGTCATCGGGCCGAAGGGCAACTCACTGCAAG
AGATCCTGGAAAGAACTGGAGTCTCCGTTGAGATCCCGCCCTCAGACAGCATCTCCGAGACTGT
GATACTTAGAGGCGAGCCTGAAAAGCTGGGACAGGCATTGACTGAAGTCTATGCCAAGGCCAAC
AGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCCTGGCTTCACCGTTTCATCATTGGTAAGAAAG
GGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGTTCACATTGAGTTCACAGAAGGTGA
GGACAAGATCACCCTGGAGGGCCCCACAGAAGATGTGAATGTAGCCCAGGAACAGATTGAAGGA
ATGGTCAAAGACCTGATTAATCGGATGGACTATGTAGAGATCAACATTGACCATAAATTCCACA
GACACCTCATTGGGAAGAGTGGAGCCAACATCAACAGAATCAAAGACCAGTACAAAGTGTCTGT
GCGCATCCCCCCTGACAGCGAGAAGAGTAACCTGATCCGAATTGAGGGAGACCCACAAGGTGTG
CAACAGGCCAAGCGGGAGCTGCTGGAGCTTGCTTCTCGCATGGAAAATGAGCGCACCAAGGATC
TAATCATTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAAGGTGAACGGATTCGAGAAAT
TCGTGACAAATTCCCAGAGGTGATCATCAACTTTCCGGATCCAGCACAAAAGAGTGAGATTGTT
CAACTCAGAGGCCCCAAGAATGAGGTGGAGAAATGTACCAAGTACATGCAGAAAATGGTTGCAG
ACCTGGTGGAAAATAGCTATTCAATTTCTGTACCGATCTTCAAACAGTTTCACAAGAATATCAT
TGGGAAAGGAGGTGCAAACATTAAAAAGATTCGTGAAGAGAGCAACACCAAGATTGACCTTCCT
GCCGAGAACAGCAACTCGGAGACCATTGTCATCACTGGCAAGCGAGCCAACTGTGAAGCCGCCC
GGAGCCGGATCCTGTCCATCCAGAAAGATCTGGCCAACATAGCTGAGGTGGAGGTCTCAATCCC
TGCCAAACTACACAACTCTCTCATTGGCACCAAGGGTCGTCTGATCCGCTCCATCATGGAGGAA
TGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGGTTCTGGTAGTGACACTGTTGTCATCAGGG
GTCCTTCCTCAGATGTGGAGAAGGCCAAGAAGCAGCTTCTGCACCTGGCTGAGGAGAAGCAAAC
CAAGAGTTTTACTGTGGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGG
GGAGGTAAAATCCGCAAGGTGCGTGACAGTACTGGAGCCCGCATCATATTTCCGGCTGCTGAGG
ATAAGGACCAGGACCTGATAACAATCATAGGAAAGGAAGATGCTGTCCGTGAGGCACAAAAGGA
GCTGGAAGCATTGATCCAGAACCTGGATAATGTGGTTGAAGACTACATGCTGGTGGACCCCAGA
CACCACCGCCATTTTGTTATCCGAAGAGGACAGGTATTACGAGAGATTGCTGAAGAATATGGCG
GGGTGATGGTCAGCTTCCCACGCTCTGGCACACAGAGTGACAAAGTCACTCTCAAGGGTGCCAA
AGACTGTGTGGAGGCAGCCAAGAAGCGAATTCAGGAAATCATTGAGGATCTGGAAGCTCAAGTA
ACGGTGGAATGTGCTATACCCCAGAAGTTTCATCGTTCGGTCATGGGTCCCAAAGGTTCAAGAA
TCCAGCAGATCACTCGGGACTACAATGTTCAAATTAAGTTCCCAGACAGAGAGGAAAACCCAGT
TCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGAGGCTGGAGAGGGCAGAGAGGCCAAG
GAGACCGACCCGGGCTCTCCCAGGAGGTGTGACATCATAGTTATCTCTGGCCGGAAAGAGAAAT
GTGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTT
TGATCTTCACCGCTACATCATTGGGCAGAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTT
GAGGTGAATATACATGTGCCAGCCCCCGAACTGCAGTCACACACCATTGCCATCACTGGCCTTG
CAGCAAATTTGGACAGGGCTAAGGCGGGGCTACTGGATCGAGTAAAGGAGCTGCAGGCTGAGCA
GGAAGATCGGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAA
ATTATCGGGAGAAAAGGGGCAGTGATCACACAGATCCGATTGGAACATGATGTGAACATCCAAT
TTCCTGATAAGGACGATGGGAATCAGCCCCAGGACCAAATCACCATCACAGGGTATGAGAAGAA
CACTGAAGCTGCCCGTGATGCTATCCTGAAAATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAG
GATGTTCCCTTGGATCACCGTGTGCATGCCCGAATCATTGGTGCCAGAGGCAAAGCCATCCGGA
AAATCATGGATGAGTTCAAGGTGGACATTCGCTTCCCACAGAGCGGAGCTCCAGACCCTAACTG
CGTCACTGTGACAGGACTCCCGGAGAATGTGGAGGAAGCTATCGACCATATCCTCAACCTAGAA
GAGGAATATCTGGCTGATGTGGTGGACAGTGAGGCGCTGCAAGTTTACATGAAGCCCCCAGCAC
ATGAAGAGTCCAAGGCACCATCCAAAGGCTTTGTGGTGCGAGATGCTCCCTGGACCTCCAACAG
CAGTGAGAAGGCTCCTGATATGAGCAGCTCTGAAGAATTCCCCAGCTTTGGGGCTCAAGTGGCC
CCCAAGACCCTCCCGTGGGGCCCCAAACGATAATGATCAAAAAGAAACCTTTCCAGCCTGCTGC
CCAAACCCAACCACACAATGGTTTGTCTCAATCTGACTCAGCAGCTGGACCCTCGTAAATTGTT
GATGCTCCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTCTGTGGCTGCTTCC
CCAGGCCTGGTCAGCACCCGCAGGCTCAGGGTCTGCTCCTGACGCTGTGCTCTGGGAAAGGCAC
GCCACTGCGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTG
GTCCACCCAGCATGTAGTCAGCACTCTGACCTTCACAGCAGAGCTCCACAGCGGCTAGGAGTTG
ACTTCCTGTGTCATGACCTCAGGAAATAAATTTCCTTGACTTTATAAAAGCCAAAACGTTTGCC
CTCTTCCTTTCCCACCTCCCTCCTGCCCACCACCTGTCGCCCAGACCTTCCTCTGTTGAAAGCA
GTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGT
ATTGGACAACAAGAGGTCAGATGCCCTGGTGATAGTGGGCTGAGAGGTAGAGGGTGGCCTGGGT
CCTCAGATAGTGCTCACTGTGCCCACTTTGGGTTCTGAAAGCATCAGGGGCAGCTTCAGCCTCA
TGATCCTATATATCTTAGAGGCACAGCTGTGTGTATGCTACTTGGGTTCCCTGTAACTGTCACA
GTGGACTTGGGTGGCTTGAGACTTTGGGGAAAGGGGAGGTAGAGACTGGCTTTGGTGATGGGGA
GGGGGCTCGACCCTAAGTAACAGCTCAACTTTCCCACAACCTTTTGCCTCTGCCTGCCTTGCCC
AGACACCTTGTGTTCATTGCCTTCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCACGTGGGTT
AGTGCCACCCCAAGGCTCTTCTCTTGATGTAGACATTTCCGGTGATTCTAGGCTTGCCATTGAG
TTGAGAGTGGAGGCCAGTGCTTTCCCTCAGGCCACATGATTCAGGGACTGGGCCAGAGCTGGGT
GCTCATTCCCAGCCAGCCTGACCATGTAGGCTCTGGCAGGCATAGCCTGGATGCTTATGCAGTC
CTGAGGAACAGACTGAAGGGGCAGGTCTCATCAATAGAGGTGGTCATTTAGCGTGGATTAAAAA
GGAAGAATGAAAACAAAAGACCCCGTGCAGGGAGCACTGCTAGCTGAAGGAGAACTTTTCCTCA
GGTACAAGAGTTAATTTTTGGACCACTGGCCTCCAGCTAGCTTGGCTGCAGGCCAACCTCACCG
AGAAGTGGTCCCAAGTTCAGAGGACCCCTGTTAGGCTGTGGAAACTGAGGACAGATCTTTTATC
TCCAGGTCATCTGATAACTAGCAACATGTCCAGTCCCAGATTCTTGGGTTACTAGAAAAGCCAG
CCTGTGCCCATCTCATGGCCTTCCCTGAGAACTGTCACTTCTACTATGACACCTTTTCCCCAAG
TCTTTCACTCCCCTATTTAATAACTCAGGCTTGGCTACCTGTCCCCTCTAATCCTCAGTGGATC
CAGAATGGCTTTCCCAAGTCTAGCTTCTGTCCCCTGTAGATGACAGTCCCACATGTACCCCTTA
GAGGAACGGTTCCAAGATGGGAAAGGAACACCTACTTGCTCAGTAGGCTGGCAGCTGGAGCAGG
TGGGTGAGGCGGGGAGAGGGCTCCTGCCTTTACCTGCAGCTGGCTCTTCTCTCATCTGCATGAG
ATTGGGGACACCTTGCTTCCCTCCTGCCCCTCCAGCCCCCTCTTCATCTTCATTGTCATCCTAC
AACATCCAGTCTCTCCCTTCACCAGAAGGTAAAGTTTAAATTCTCACCACAGGATCTTGCACAT
CTCCTTTTATTGCTAAGTCTGTAGATGTTAGCCCTATCCTAAGCTGTTCAGGGTCTCACTCCTT
TTCTCTGATTGTTAATAAGGACTATGAAATTGACTGTACCCAGGTCACCTCTCTGCAGCCTCCA
AGACATTGAGGAGCCTAGGGCAGGGGTGGGGAGTGTCTTTTCCTCCTTGTTGAATGTCTTCCAT
GTCCTGTGTTTCCATAGCTACATCCGTCCCTTGGCCTTAACTTTGGAATTTGGAGATTATATGC
AAACATGTGTAAAGGCTCATGAATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACC
CGAAACCAGACGCA

hide sequence

RefSeq Acc Id:

XM_039084167 ⟹ XP_038940095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,433,241 (-)	NCBI
mRatBN7.2	9	93,948,103 - 93,985,860 (-)	NCBI

RefSeq Acc Id:

XM_063267674 ⟹ XP_063123744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,464,983 (-)	NCBI

RefSeq Acc Id:

XM_063267676 ⟹ XP_063123746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,433,068 (-)	NCBI

RefSeq Acc Id:

XM_063267677 ⟹ XP_063123747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,464,976 (-)	NCBI

RefSeq Acc Id:

XM_063267678 ⟹ XP_063123748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,465,439 (-)	NCBI

RefSeq Acc Id:

XM_063267679 ⟹ XP_063123749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,433,178 (-)	NCBI

RefSeq Acc Id:

XM_063267680 ⟹ XP_063123750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,464,933 (-)	NCBI

RefSeq Acc Id:

XM_063267681 ⟹ XP_063123751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,449,502 (-)	NCBI

RefSeq Acc Id:

XM_063267682 ⟹ XP_063123752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,465,439 (-)	NCBI

RefSeq Acc Id:

XM_063267683 ⟹ XP_063123753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,464,984 (-)	NCBI

RefSeq Acc Id:

XM_063267684 ⟹ XP_063123754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,465,446 (-)	NCBI

RefSeq Acc Id:

XM_063267685 ⟹ XP_063123755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	101,395,491 - 101,465,441 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419791	(Get FASTA)	NCBI Sequence Viewer
	NP_001419792	(Get FASTA)	NCBI Sequence Viewer
	NP_001419793	(Get FASTA)	NCBI Sequence Viewer
	NP_001419794	(Get FASTA)	NCBI Sequence Viewer
	NP_001419795	(Get FASTA)	NCBI Sequence Viewer
	NP_001419796	(Get FASTA)	NCBI Sequence Viewer
	NP_001419797	(Get FASTA)	NCBI Sequence Viewer
	NP_001419798	(Get FASTA)	NCBI Sequence Viewer
	NP_001419799	(Get FASTA)	NCBI Sequence Viewer
	NP_001419800	(Get FASTA)	NCBI Sequence Viewer
	NP_001419801	(Get FASTA)	NCBI Sequence Viewer
	NP_742036	(Get FASTA)	NCBI Sequence Viewer
	XP_006245610	(Get FASTA)	NCBI Sequence Viewer
	XP_017452112	(Get FASTA)	NCBI Sequence Viewer
	XP_017452113	(Get FASTA)	NCBI Sequence Viewer
	XP_038940095	(Get FASTA)	NCBI Sequence Viewer
	XP_063123744	(Get FASTA)	NCBI Sequence Viewer
	XP_063123746	(Get FASTA)	NCBI Sequence Viewer
	XP_063123747	(Get FASTA)	NCBI Sequence Viewer
	XP_063123748	(Get FASTA)	NCBI Sequence Viewer
	XP_063123749	(Get FASTA)	NCBI Sequence Viewer
	XP_063123750	(Get FASTA)	NCBI Sequence Viewer
	XP_063123751	(Get FASTA)	NCBI Sequence Viewer
	XP_063123752	(Get FASTA)	NCBI Sequence Viewer
	XP_063123753	(Get FASTA)	NCBI Sequence Viewer
	XP_063123754	(Get FASTA)	NCBI Sequence Viewer
	XP_063123755	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD09246	(Get FASTA)	NCBI Sequence Viewer
	AAH63147	(Get FASTA)	NCBI Sequence Viewer
	AAI05749	(Get FASTA)	NCBI Sequence Viewer
	EDL91929	(Get FASTA)	NCBI Sequence Viewer
	EDL91930	(Get FASTA)	NCBI Sequence Viewer
	EDL91931	(Get FASTA)	NCBI Sequence Viewer
	EDL91932	(Get FASTA)	NCBI Sequence Viewer
	EDL91933	(Get FASTA)	NCBI Sequence Viewer
	EDL91934	(Get FASTA)	NCBI Sequence Viewer
	EDL91935	(Get FASTA)	NCBI Sequence Viewer
	EDL91936	(Get FASTA)	NCBI Sequence Viewer
	EDL91937	(Get FASTA)	NCBI Sequence Viewer
	EDL91938	(Get FASTA)	NCBI Sequence Viewer
	EDL91939	(Get FASTA)	NCBI Sequence Viewer
	EDL91940	(Get FASTA)	NCBI Sequence Viewer
	EDL91941	(Get FASTA)	NCBI Sequence Viewer
	EDL91942	(Get FASTA)	NCBI Sequence Viewer
	EDL91943	(Get FASTA)	NCBI Sequence Viewer
	EDL91944	(Get FASTA)	NCBI Sequence Viewer
	EDL91945	(Get FASTA)	NCBI Sequence Viewer
	EDL91946	(Get FASTA)	NCBI Sequence Viewer
	EDL91947	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048476
	ENSRNOP00000074707
GenBank Protein	Q9Z1A6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_742036 ⟸ NM_172039

- UniProtKB:

Q9Z1A6 (UniProtKB/Swiss-Prot), Q3KRF2 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), A6JR00 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAW
SNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIM
VSGKLDAVMKARKDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP
SNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRI
NIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQE
ILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKG
QNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHR
HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDL
IIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSEIVQLRGPKNEVEKCTKYMQKMVAD
LVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAAR
SRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG
PSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAED
KDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGG
VMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRI
QQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKC
EAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLA
ANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF
PDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHARIIGARGKAIRK
IMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAH
EESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR

hide sequence

RefSeq Acc Id:

XP_006245610 ⟸ XM_006245548

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAW
SNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIM
VSGKLDAVMKARKDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP
SNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRI
NIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQE
ILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKG
QNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHR
HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDL
IIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSEIVQLRGPKNEVEKCTKYMQKMVAD
LVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAAR
SRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG
PSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAED
KDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGG
VMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRI
QQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKC
EAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLA
ANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF
PDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHARIIGARGKAIRK
IMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAH
EESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR

hide sequence

RefSeq Acc Id:	XP_017452113 ⟸ XM_017596624
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z1A6 (UniProtKB/Swiss-Prot), Q3KRF2 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), A6JR00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAW SNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIM VSGKLDAVMKARKDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP SNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRI NIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQE ILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKG QNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHR HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDL IIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSEIVQLRGPKNEVEKCTKYMQKMVAD LVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAAR SRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG PSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAED KDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGG VMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRI QQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKC EAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLA ANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF PDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHARIIGARGKAIRK IMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAH EESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR hide sequence

RefSeq Acc Id:

XP_017452112 ⟸ XM_017596623

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAW
SNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIM
VSGKLDAVMKARKDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP
SNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRI
NIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQE
ILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKG
QNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHR
HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDL
IIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSEIVQLRGPKNEVEKCTKYMQKMVAD
LVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAAR
SRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG
PSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAED
KDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGG
VMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRI
QQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKC
EAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLA
ANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF
PDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHARIIGARGKAIRK
IMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAH
EESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR

hide sequence

Ensembl Acc Id:

ENSRNOP00000074707 ⟸ ENSRNOT00000085448

Ensembl Acc Id:

ENSRNOP00000048476 ⟸ ENSRNOT00000051155

Ensembl Acc Id:

ENSRNOP00000073716 ⟸ ENSRNOT00000086433

RefSeq Acc Id:	XP_038940095 ⟸ XM_039084167
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000090589 ⟸ ENSRNOT00000103860

RefSeq Acc Id:	XP_063123754 ⟸ XM_063267684
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063123755 ⟸ XM_063267685
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063123748 ⟸ XM_063267678
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123752 ⟸ XM_063267682
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z1A6 (UniProtKB/Swiss-Prot), A6JR00 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), Q3KRF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123753 ⟸ XM_063267683
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z1A6 (UniProtKB/Swiss-Prot), A6JR00 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), Q3KRF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123744 ⟸ XM_063267674
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123747 ⟸ XM_063267677
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123750 ⟸ XM_063267680
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z1A6 (UniProtKB/Swiss-Prot), A6JR00 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), Q3KRF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123751 ⟸ XM_063267681
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z1A6 (UniProtKB/Swiss-Prot), A6JR00 (UniProtKB/TrEMBL), A6JR01 (UniProtKB/TrEMBL), Q3KRF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123749 ⟸ XM_063267679
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123746 ⟸ XM_063267676
- Peptide Label:	isoform X1

Protein Domains

K Homology KH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z1A6-F1-model_v2	AlphaFold	Q9Z1A6	1-1268	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696882

Promoter ID:

EPDNEW_R7399

Type:

multiple initiation site

Name:

Hdlbp_2

Description:

high density lipoprotein binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7400

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	100,592,274 - 100,592,334	EPDNEW

RGD ID:

13696875

Promoter ID:

EPDNEW_R7400

Type:

multiple initiation site

Name:

Hdlbp_1

Description:

high density lipoprotein binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7399

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	100,624,667 - 100,624,727	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620962	AgrOrtholog
BioCyc Gene	G2FUF-26643	BioCyc
Ensembl Genes	ENSRNOG00000031479	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000051155	ENTREZGENE
	ENSRNOT00000085448	ENTREZGENE
Gene3D-CATH	3.30.1370.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5598374	IMAGE-MGC_LOAD
InterPro	KH_dom	UniProtKB/Swiss-Prot
	KH_dom_type_1	UniProtKB/Swiss-Prot
	KH_dom_type_1_sf	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124559	IMAGE-MGC_LOAD
NCBI Gene	64474	ENTREZGENE
PANTHER	SCP160	UniProtKB/Swiss-Prot
	VIGILIN	UniProtKB/Swiss-Prot
Pfam	KH_1	UniProtKB/Swiss-Prot
	KH_Vigilin	UniProtKB/Swiss-Prot
PhenoGen	Hdlbp	PhenoGen
PROSITE	KH_TYPE_1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000031479	RatGTEx
SMART	SM00322	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54791	UniProtKB/Swiss-Prot
UniProt	A0A0G2K8R4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AEL3_RAT	UniProtKB/TrEMBL
	A6JQZ0_RAT	UniProtKB/TrEMBL
	A6JQZ1_RAT	UniProtKB/TrEMBL
	A6JQZ4_RAT	UniProtKB/TrEMBL
	A6JQZ7_RAT	UniProtKB/TrEMBL
	A6JR00	ENTREZGENE, UniProtKB/TrEMBL
	A6JR01	ENTREZGENE, UniProtKB/TrEMBL
	A6JR04_RAT	UniProtKB/TrEMBL
	A6JR07_RAT	UniProtKB/TrEMBL
	A6JR08_RAT	UniProtKB/TrEMBL
	Q3KRF2	ENTREZGENE
	Q6P513_RAT	UniProtKB/TrEMBL
	Q9Z1A6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-10-22	Hdlbp	high density lipoprotein binding protein	Hdlbp	high density lipoprotein binding protein (vigilin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-15	Hdlbp	high density lipoprotein binding protein (vigilin)	Hdlbp	high density lipoprotein binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Hdlbp	high density lipoprotein binding protein		lipoprotein-binding protein	Name updated	1299863	APPROVED
2002-08-07	Hdlbp	lipoprotein-binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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