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Gene: Sh3kbp1 (SH3 domain-containing kinase-binding protein 1) Rattus norvegicus

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Symbol:

Sh3kbp1

Name:

SH3 domain-containing kinase-binding protein 1

RGD ID:

620904

Description:

Enables ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including actin filament organization; positive regulation of B cell activation; and regulation of cell shape. Is active in GABA-ergic synapse; glutamatergic synapse; and postsynaptic density. Human ortholog(s) of this gene implicated in immunodeficiency 61. Orthologous to human SH3KBP1 (SH3 domain containing kinase binding protein 1); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CIN85; regulator of ubiquitous kinase; ruk; Seta; SH3 domain-containing adapter protein; SH3-containing, expressed in tumorigenic astrocytes; SH3-domain kinase binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	38,686,530 - 39,031,658 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl				GRCr8
mRatBN7.2	X	34,877,862 - 35,223,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	36,015,061 - 36,359,892 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	39,478,687 - 39,823,541 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	34,644,756 - 34,989,581 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	37,790,004 - 38,196,365 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	37,790,586 - 38,196,204 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	56,075,533 - 56,422,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	35,544,608 - 35,884,206 (-)	NCBI		Celera
RGSC_v3.1	X	56,129,005 - 56,476,449 (-)	NCBI
Cytogenetic Map	X	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Colonic Neoplasms (ISO)

immunodeficiency 61 (ISO)

Laterality Defects, Autosomal Dominant (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

1-nitropyrene (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butan-1-ol (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

capsaicin (EXP)

CGP 52608 (ISO)

chloroprene (ISO)

chlorpyrifos (EXP)

choline (ISO)

cisplatin (EXP,ISO)

clozapine (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

DDE (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diazinon (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glycidyl methacrylate (ISO)

gold atom (ISO)

gold(0) (ISO)

haloperidol (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

indometacin (ISO)

isoflurane (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel dichloride (EXP)

nicotine (ISO)

okadaic acid (ISO)

oxidopamine (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

PhIP (EXP)

pirinixic acid (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (EXP)

quercetin (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP,ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

apoptotic process (IEA)

cell migration (IBA)

endocytosis (IEA)

positive regulation of B cell activation (IEA,ISO)

regulation of apoptotic process (TAS)

Cellular Component

cell-cell junction (IEA,ISO)

cytoplasm (IEA,ISO,ISS)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

cytoskeleton (IEA)

cytosol (IEA,ISO)

endocytic vesicle (IEA,ISO,ISS)

focal adhesion (IEA)

GABA-ergic synapse (IDA)

glutamatergic synapse (IDA)

neuron projection (IEA)

postsynaptic density (IDA)

synapse (IDA,IEA,IEP)

Molecular Function

protein binding (IPI,ISO)

protein-macromolecule adaptor activity (IBA)

SH3 domain binding (IEA)

ubiquitin protein ligase binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	SETA: a novel SH3 domain-containing adapter molecule associated with malignancy in astrocytes.	Bogler O, etal., Neuro-oncol 2000 Jan;2(1):6-15.
2.	SETA is a multifunctional adapter protein with three SH3 domains that binds Grb2, Cbl, and the novel SB1 proteins.	Borinstein SC, etal., Cell Signal 2000 Dec;12(11-12):769-79.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Negative regulation of PI 3-kinase by Ruk, a novel adaptor protein.	Gout I, etal., EMBO J 2000 Aug 1;19(15):4015-25.
6.	CIN85 is localized at synapses and forms a complex with S-SCAM via dendrin.	Kawata A, etal., J Biochem. 2006 May;139(5):931-9.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	Intersectin 1 forms a complex with adaptor protein Ruk/CIN85 in vivo independently of epidermal growth factor stimulation.	Nikolaienko O, etal., Cell Signal. 2009 May;21(5):753-9. doi: 10.1016/j.cellsig.2009.01.013. Epub 2009 Jan 8.
10.	The adaptor molecule CIN85 regulates Syk tyrosine kinase level by activating the ubiquitin-proteasome degradation pathway.	Peruzzi G, etal., J Immunol. 2007 Aug 15;179(4):2089-96.
11.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
12.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
14.	Identification and characterization of a novel Rho GTPase activating protein implicated in receptor-mediated endocytosis.	Sakakibara T, etal., FEBS Lett 2004 May 21;566(1-3):294-300.
15.	CIN85 regulates dopamine receptor endocytosis and governs behaviour in mice.	Shimokawa N, etal., EMBO J. 2010 Jul 21;29(14):2421-32. doi: 10.1038/emboj.2010.120. Epub 2010 Jun 15.
16.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12135478	PMID:12771190	PMID:15522216	PMID:16177060	PMID:20221403	PMID:21830225	PMID:21834987	PMID:23793062	PMID:25468996	PMID:29636373

Genomics

Comparative Map Data

Sh3kbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	38,686,530 - 39,031,658 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl				GRCr8
mRatBN7.2	X	34,877,862 - 35,223,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	36,015,061 - 36,359,892 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	39,478,687 - 39,823,541 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	34,644,756 - 34,989,581 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	37,790,004 - 38,196,365 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	37,790,586 - 38,196,204 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	56,075,533 - 56,422,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	35,544,608 - 35,884,206 (-)	NCBI		Celera
RGSC_v3.1	X	56,129,005 - 56,476,449 (-)	NCBI
Cytogenetic Map	X	q14	NCBI

SH3KBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	19,533,977 - 19,887,600 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	19,533,977 - 19,887,650 (-)	Ensembl			hg38	GRCh38
GRCh37	X	19,552,095 - 19,905,718 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	19,463,441 - 19,815,640 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	19,313,176 - 19,665,376	NCBI
Celera	X	23,675,636 - 24,008,177 (-)	NCBI		Celera
Cytogenetic Map	X	p22.12	NCBI
HuRef	X	17,300,128 - 17,651,187 (-)	NCBI		HuRef
CHM1_1	X	19,582,478 - 19,936,208 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	19,116,856 - 19,470,507 (-)	NCBI		T2T-CHM13v2.0

Sh3kbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	158,409,888 - 158,758,916 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	158,410,268 - 158,761,065 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	159,626,892 - 159,975,920 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	159,627,272 - 159,978,069 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	156,065,340 - 156,413,849 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	155,052,706 - 155,318,272 (+)	NCBI		MGSCv36	mm8
Celera	X	142,872,597 - 143,219,835 (+)	NCBI		Celera
Cytogenetic Map	X	F4	NCBI
cM Map	X	73.65	NCBI

Sh3kbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955509	4,960 - 345,012 (-)	Ensembl
ChiLan1.0	NW_004955509	6,157 - 344,930 (-)	NCBI	ChiLan1.0	ChiLan1.0

SH3KBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	21,332,665 - 21,689,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	21,336,054 - 21,693,305 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	12,154,789 - 12,511,949 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	19,517,952 - 19,822,925 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	19,517,952 - 19,822,931 (-)	Ensembl			panPan2	panpan1.1

SH3KBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	15,482,593 - 15,818,113 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	15,484,680 - 15,817,967 (-)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	X	15,442,674 - 15,782,235 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	15,441,780 - 15,779,762 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	15,491,286 - 15,830,650 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	15,493,198 - 15,832,564 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	15,560,580 - 15,900,196 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sh3kbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	8,541,179 - 8,830,808 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936624	4,327,031 - 4,615,699 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936624	4,327,100 - 4,616,724 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SH3KBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	15,885,069 - 16,224,183 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	15,887,131 - 16,229,212 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	17,136,481 - 17,492,932 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SH3KBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	17,999,262 - 18,357,003 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	17,999,211 - 18,357,157 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	19,857,065 - 20,214,417 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sh3kbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	4,329,824 - 4,714,298 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624829	4,329,959 - 4,714,329 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sh3kbp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	32,881,363 - 33,229,056 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sh3kbp1
2632 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1388
Count of miRNA genes:	246
Interacting mature miRNAs:	309
Transcripts:	ENSRNOT00000006438, ENSRNOT00000006741, ENSRNOT00000058687, ENSRNOT00000058688, ENSRNOT00000074898
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Markers in Region

RH18201

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	34,877,938 - 34,878,128 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	37,790,659 - 37,790,848	NCBI	Rnor6.0
Rnor_5.0	X	38,095,089 - 38,095,278	UniSTS	Rnor5.0
RGSC_v3.4	X	56,075,610 - 56,075,799	UniSTS	RGSC3.4
Celera	X	35,544,685 - 35,544,874	UniSTS
Cytogenetic Map	X	q21	UniSTS

AW530792

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	34,877,514 - 34,877,635 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	37,790,235 - 37,790,355	NCBI	Rnor6.0
Rnor_5.0	X	38,094,665 - 38,094,785	UniSTS	Rnor5.0
RGSC_v3.4	X	56,075,186 - 56,075,306	UniSTS	RGSC3.4
Celera	X	35,544,261 - 35,544,381	UniSTS
RH 3.4 Map	X	499.1	UniSTS
Cytogenetic Map	X	q21	UniSTS

AU048313

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	35,211,181 - 35,211,310 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	38,185,037 - 38,185,165	NCBI	Rnor6.0
Rnor_5.0	X	38,494,431 - 38,494,559	UniSTS	Rnor5.0
RGSC_v3.4	X	56,411,812 - 56,411,940	UniSTS	RGSC3.4
Celera	X	35,873,465 - 35,873,593	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF131867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF230519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF230520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF255884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF255885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF255886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF255887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF255888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U90261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006438 ⟹ ENSRNOP00000006438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl
Rnor_6.0 Ensembl	X	37,790,586 - 38,196,204 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000006741 ⟹ ENSRNOP00000006741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl
Rnor_6.0 Ensembl	X	37,791,483 - 38,196,060 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000074898 ⟹ ENSRNOP00000067100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl
Rnor_6.0 Ensembl	X	37,791,601 - 38,026,774 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095370 ⟹ ENSRNOP00000093532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,222,747 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096669 ⟹ ENSRNOP00000083463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,534 - 38,829,082 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,020,429 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113102 ⟹ ENSRNOP00000089759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 38,954,126 (-)	Ensembl
mRatBN7.2 Ensembl	X	34,877,866 - 35,146,767 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142445 ⟹ ENSRNOP00000107405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,530 - 39,031,393 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165508 ⟹ ENSRNOP00000109713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	38,686,534 - 38,829,082 (-)	Ensembl

RefSeq Acc Id:

NM_053360 ⟹ NP_445812

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,393 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,222,747 (-)	NCBI
Rnor_6.0	X	37,790,582 - 38,196,204 (-)	NCBI
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI
RGSC_v3.4	X	56,075,533 - 56,422,980 (-)	RGD
Celera	X	35,544,608 - 35,884,206 (-)	RGD

Sequence:

show sequence

CAGGAAACCCGGAGCAGCCGGGTGCAGCGGGGCCGCGATGCAGCAGCAGCAGCAGCAGGAGTCG
CCCCAGGGCAGCAGCGGCAGCAGCAGCAGAAGCAGTAGCGGGCGGCGCTGAGCTGCCACCACCG
CCGCTGAGGAAGAAGCCGGCCAAGCAGCAGCCGCGTCCCGACGCCCGCGCCCCCGATCCCCGCG
CCGCGACCTCCGCGCCCCGAACCCTACGCCCGGTTCCGCCAACTTTCACTCTGCTTTGGCGACT
CAGCTCGGCTTGGCGCCAATGGTGGAGGCCATAGTGGAGTTTGATTACCAGGCCCAGCATGATG
ATGAGCTGACGATCAGCGTGGGTGAGGTCATCACCAACATCAGGAAGGAGGATGGAGGCTGGTG
GGAGGGACAGATCAACGGCAGGAGAGGTTTGTTCCCTGACAACTTTGTAAGAGAAATAAAGAAG
GATGTGAAGAAAGACCTTCTCTCTAACAAAGCTCCTGAGAAGCCCATGCATGATGTGTCCAGTG
GAAACTCTTTGCTTTCTTCTGAAACCATTTTAAGAACCAATAAACGAGGAGAGCGACGGAGACG
CCGATGCCAGGTGGCGTTCAGCTACCTGCCTCAGAATGACGATGAGCTTGAGCTGAAAGTCGGG
GACATCATAGAGGTTGTAGGAGAGGTGGAGGAAGGATGGTGGGAAGGCGTACTCAATGGGAAGA
CTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTC
CCAGGATGAGCAGCTTTCCAAGTCAAGCTTAAGAGAAACCACAGGCTCCGAGAGTGATGGAGGC
GACTCAAGCAGTACCAAGTCTGAAGGCGCCAATGGGACGGTGGCAACTGCAGCTATCCAGCCCA
AGAAAGTTAAAGGAGTGGGGTTTGGAGATATTTTCAAAGACAAGCCAATTAAACTAAGACCAAG
GTCGATTGAAGTGGAAAATGACTTCCTGCCTGTAGAAAAGACAATTGGGAAGAAGTTACCTCCA
GCTACATCAACCCCAGACCCATCGAAAACAGAAATGGACAGCAGGACAAAGACCAAGGATTACT
GCAAAGTAATATTTCCATATGAGGCACAGAATGATGACGAATTGACAATCAAGGAAGGAGATAT
AGTGACTCTCATCAATAAGGACTGCATCGATGTAGGCTGGTGGGAAGGAGAGCTCAATGGCAGA
CGAGGAGTGTTTCCTGACAACTTCGTGAAGTTACTTCCGTCAGACTTCGACAAGGAAGGGAATA
GACCCAAGAAGCCGCCACCTCCATCCGCTCCTGTCATCAAACAAGGGGCAGGTACCACAGAGAG
AAAACATGAAATTAAAAAGATACCTCCTGAAAGACCGGAAACACTTCCAAACAGAACAGAAGAG
AAAGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCTTCTGTTCCTGCCATCCCAC
CTAAAAAGCCTCGTCCACCTAAGACCAATTCTCTGAACAGACCCGGTGTGTTGCCCCCAAGAAG
ACCCGAGCGACCAGTGGGCCCACTGACACACACCAGGGGTGACAGTTCAAAGATTGACTTGGCA
GGCAGCACGCTCTCTGGCATCTTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGACCTAG
AAGGTTTTGACTCCGTGATATCATCTACTGAAAAACTCAGCCACCCAACCACAAGCAGACCAAA
AGCTACGGGAAGACGGCCTCCTTCTCAGTCGCTCACATCTTCTTCCCTTTCAAGCCCTGATATC
TTTGACTCCCCAAGTCCCGAAGAAGATAAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAG
ACGTGTCAAAGAAGACTTCCAGAACTGTTACCATATCCCAAGTGTCTGATAACAAGGCTTCCCT
GCCACCCAAGCCAGGGACCATGGCAGCTGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAGTGGCT
TCCTCTCCCATGTCATCCTCTTTGGGAACAGCTGGACAACGAGCCAGTTCTCCATCTCTGTTCA
GCGCAGAAGGAAAAGCAAAGACGGAGTCTGCAGTGAGCAGCCAGGCTGCCATCGAGGAGCTCAA
GATGCAAGTCCGTGAGCTGAGAACCATCATCGAGACCATGAAGGACCAGCAGAAACGTGAGATT
AAGCAGTTACTGTCAGAATTGGATGAAGAGAAAAAGATCCGGCTCCGATTGCAGATGGAGGTGA
ATGACATAAAGAAAGCTCTCCAATCAAAATGAATACTTGATCATTGAAACGCCACATTATTCAC
CCCGAGTGCAAGACTCAGATATTCTGCCCCAATCAAAATCATCTTGTGCCAAAAAAAAAAAAAA
ATTAAAGGTTTGATTCATCGTGTCCCTGTTTGAACATTCAGCACAAAAGTCTTCTTAGCACAAC
ACAATTCTACCCAAGAGAAGACTCTTTCCCATGGTGTTGTCCTGGGTCCGGCAGTGGTTGTGAT
TTAGAGCCAAACGTGCTAAAGGCTTTTCTACCTTGAGATCTCCGGCAAAATGAAAACTCAGGCA
GTTTAGTCCATAGTAGTACTATTTTGATGATATTTTCCATTAACAAAATGTAATTTCGGATTAT
TCGTTTATAGGCTTTATAATGTTATGGTTTTTTTTTTTTAAATCGTGTTTTGTCACAGATGCCC
CTAGTGTTTGTGCTAACGTAGTCAGAAGCAAGTGCCTCACTCACTTGCTGCAGATGGAGCAAAT
GCTGCCTGGCTTTGTATTCCCCATTTAGGAGTCTATCACATATGCAATTTGAGGTCCAATCCTT
CCCTTTCCCTGCCAGCTGACCCCCACCACTCTAAGAGAAATTTTAGCTTATATATGATGGTATA
TTTACAAAAAGAGAAAGAAAAAATCTGGTATTTGCAATGATCTGTGCCTTCTTTCTACCACCCT
TTTGATTGGAGCTTTTGTGATGCAGCTACCAAGATTCCAAATAAAGAAATAAAAATCAGCCACT
TTTATCCCTGTCCACTAGAGGCCACTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAA
GAGGAATCCGCTGAGAAGTCTGGCCTGCTCTTTGGTACCAGCTGTGACTTTTCCGTTTCTCCTG
CTTTGAGGTTGTTCACGAGACTAGAAATGTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGT
TAAACCCCTGCTTCCTGCCTTTTACACCTATTGCGTGAACAGAATATGCATTATTAAAGCAAAA
ATAAATAAAAATAAAATGCAAGTGAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256924 ⟹ XP_006256986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,953,932 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,145,267 (-)	NCBI
Rnor_6.0	X	37,790,004 - 38,026,891 (-)	NCBI
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI

Sequence:

show sequence

GGTGTTTGTCAAATGTGTTGTGATTATATGGTGTTATTATGGTTTATTTCCAGAGATAAAGAGG
CATCCCAAAACTTCAGCCTATAAATACCTTCTTCCCTTTCTATGTCCTCACAGGAAATAAAGAA
GGATGTGAAGAAAGACCTTCTCTCTAACAAAGCTCCTGAGAAGCCCATGCATGATGTGTCCAGT
GGAAACTCTTTGCTTTCTTCTGAAACCATTTTAAGAACCAATAAACGAGGAGAGCGACGGAGAC
GCCGATGCCAGGTGGCGTTCAGCTACCTGCCTCAGAATGACGATGAGCTTGAGCTGAAAGTCGG
GGACATCATAGAGGTTGTAGGAGAGGTGGAGGAAGGATGGTGGGAAGGCGTACTCAATGGGAAG
ACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTT
CCCAGGATGAGCAGCTTTCCAAGTCAAGGCCTGAAGGTTTCCTTCCAGCTTCTCTGCTGCCCTT
TCCAGCTCATGGAGCAAAAGGAAAGACTACCTTTGAAGGGACAATTCTGTACCGAGCTGCACCG
GGAAAGACGGAGGGCCACAGACGCTATTACAGCTTAAGAGAAACCACAGGCTCCGAGAGTGATG
GAGGCGACTCAAGCAGTACCAAGTCTGAAGGCGCCAATGGGACGGTGGCAACTGCAGCTATCCA
GCCCAAGAAAGTTAAAGGAGTGGGGTTTGGAGATATTTTCAAAGACAAGCCAATTAAACTAAGA
CCAAGGTCGATTGAAGTGGAAAATGACTTCCTGCCTGTAGAAAAGACAATTGGGAAGAAGTTAC
CTCCAGCTACATCAACCCCAGACCCATCGAAAACAGAAATGGACAGCAGGACAAAGACCAAGGA
TTACTGCAAAGTAATATTTCCATATGAGGCACAGAATGATGACGAATTGACAATCAAGGAAGGA
GATATAGTGACTCTCATCAATAAGGACTGCATCGATGTAGGCTGGTGGGAAGGAGAGCTCAATG
GCAGACGAGGAGTGTTTCCTGACAACTTCGTGAAGTTACTTCCGTCAGACTTCGACAAGGAAGG
GAATAGACCCAAGAAGCCGCCACCTCCATCCGCTCCTGTCATCAAACAAGGGGCAGGTACCACA
GAGAGAAAACATGAAATTAAAAAGATACCTCCTGAAAGACCGGAAACACTTCCAAACAGAACAG
AAGAGAAAGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCTTCTGTTCCTGCCAT
CCCACCTAAAAAGCCTCGTCCACCTAAGACCAATTCTCTGAACAGACCCGGTGTGTTGCCCCCA
AGAAGACCCGAGCGACCAGTGGGCCCACTGACACACACCAGGGGTGACAGTTCAAAGATTGACT
TGGCAGGCAGCACGCTCTCTGGCATCTTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGA
CCTAGAAGGTTTTGACTCCGTGATATCATCTACTGAAAAACTCAGCCACCCAACCACAAGCAGA
CCAAAAGCTACGGGAAGACGGCCTCCTTCTCAGTCGCTCACATCTTCTTCCCTTTCAAGCCCTG
ATATCTTTGACTCCCCAAGTCCCGAAGAAGATAAAGAGGAACACATTTCGCTTGCGCACAGAGG
AATAGACGTGTCAAAGAAGACTTCCAGAACTGTTACCATATCCCAAGTGTCTGATAACAAGGCT
TCCCTGCCACCCAAGCCAGGGACCATGGCAGCTGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAG
TGGCTTCCTCTCCCATGTCATCCTCTTTGGGAACAGCTGGACAACGAGCCAGTTCTCCATCTCT
GTTCAGCGCAGAAGGAAAAGCAAAGACGGAGTCTGCAGTGAGCAGCCAGGCTGCCATCGAGGAG
CTCAAGATGCAAGTCCGTGAGCTGAGAACCATCATCGAGACCATGAAGGACCAGCAGAAACGTG
AGATTAAGCAGTTACTGTCAGAATTGGATGAAGAGAAAAAGATCCGGCTCCGATTGCAGATGGA
GGTGAATGACATAAAGAAAGCTCTCCAATCAAAATGAATACTTGATCATTGAAACGCCACATTA
TTCACCCCGAGTGCAAGACTCAGATATTCTGCCCCAATCAAAATCATCTTGTGCCAAAAAAAAA
AAAAATTAAAGGTTTGATTCATCGTGTCCCTGTTTGAACATTCAGCACAAAAGTCTTCTTAGCA
CAACACAATTCTACCCAAGAGAAGACTCTTTCCCATGGTGTTGTCCTGGGTCCGGCAGTGGTTG
TGATTTAGAGCCAAACGTGCTAAAGGCTTTTCTACCTTGAGATCTCCGGCAAAATGAAAACTCA
GGCAGTTTAGTCCATAGTAGTACTATTTTGATGATATTTTCCATTAACAAAATGTAATTTCGGA
TTATTCGTTTATAGGCTTTATAATGTTATGGTTTTTTTTTTTTAAATCGTGTTTTGTCACAGAT
GCCCCTAGTGTTTGTGCTAACGTAGTCAGAAGCAAGTGCCTCACTCACTTGCTGCAGATGGAGC
AAATGCTGCCTGGCTTTGTATTCCCCATTTAGGAGTCTATCACATATGCAATTTGAGGTCCAAT
CCTTCCCTTTCCCTGCCAGCTGACCCCCACCACTCTAAGAGAAATTTTAGCTTATATATGATGG
TATATTTACAAAAAGAGAAAGAAAAAATCTGGTATTTGCAATGATCTGTGCCTTCTTTCTACCA
CCCTTTTGATTGGAGCTTTTGTGATGCAGCTACCAAGATTCCAAATAAAGAAATAAAAATCAGC
CACTTTTATCCCTGTCCACTAGAGGCCACTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTC
CTAAGAGGAATCCGCTGAGAAGTCTGGCCTGCTCTTTGGTACCAGCTGTGACTTTTCCGTTTCT
CCTGCTTTGAGGTTGTTCACGAGACTAGAAATGTCATTCCAGCTTGATTGTTTTATCATCAGCC
AAGTTAAACCCCTGCTTCCTGCCTTTTACACCTATTGCGTGAACAGAATATGCATTATTAAAGC
AAAAATAAATAAAAATAAAATGCAAGTGAAAACGGGGGGAATTGGATTATTTCGTGCACTGGGT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTGTTTAAATTGTATTC
ACAGTGTTGTTTGCCTTGCTCACTTGTAATCCCCTCCTCAGATCTAGGAGAATGGGAGGAGGGT
CTTGTGGAAATGTAGCTATTGGATCTTTCCTGCACTTATGGAATTGCTTTTTCTTTCCTAATGA
AACTGCTGTTTGCTTGTCTGCTTTCTCTTTATAGTATATGAACAGTTCAGCCTTAGACTATGTA
ACTGTTTTCTCATCTTTAGCTGAAAATTGGGGGGGAGGGGTCATTCTGTCCTGCAAGATTGTTG
ATGGGGTAGAGATGGAGGGGTGGTCCCTTAATGATTCCCCAAATATGTGTGATGTGTTTCTAAA
CTGCTGCTTTGTCTATTTCCTGCATTTTATAGTGAAACTGCTAAACATTAATAGATTTTCACTA
CCACAAAGAATGAGAATCAACGACACCAAAAGAATGATGCAAAAACTTCCCATTATTCATCACT
GAAAACATAACGAATAAATGTCTCTTCCTTTTTC

hide sequence

RefSeq Acc Id:

XM_006256929 ⟹ XP_006256991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,953,931 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,145,264 (-)	NCBI
Rnor_6.0	X	37,790,004 - 38,026,806 (-)	NCBI
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI

Sequence:

show sequence

AAATACCTTCTTCCCTTTCTATGTCCTCACAGGAAATAAAGAAGGATGTGAAGAAAGACCTTCT
CTCTAACAAAGCTCCTGAGAAGCCCATGCATGATGTGTCCAGTGGAAACTCTTTGCTTTCTTCT
GAAACCATTTTAAGAACCAATAAACGAGGAGAGCGACGGAGACGCCGATGCCAGGTGGCGTTCA
GCTACCTGCCTCAGAATGACGATGAGCTTGAGCTGAAAGTCGGGGACATCATAGAGGTTGTAGG
AGAGGTGGAGGAAGGATGGTGGGAAGGCGTACTCAATGGGAAGACTGGAATGTTTCCTTCCAAC
TTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCAGGATGAGCAGCTTTCCA
AGTCAAGCTTAAGAGAAACCACAGGCTCCGAGAGTGATGGAGGCGACTCAAGCAGTACCAAGTC
TGAAGGCGCCAATGGGACGGTGGCAACTGCAGCTATCCAGCCCAAGAAAGTTAAAGGAGTGGGG
TTTGGAGATATTTTCAAAGACAAGCCAATTAAACTAAGACCAAGGTCGATTGAAGTGGAAAATG
ACTTCCTGCCTGTAGAAAAGACAATTGGGAAGAAGTTACCTCCAGCTACATCAACCCCAGACCC
ATCGAAAACAGAAATGGACAGCAGGACAAAGACCAAGGATTACTGCAAAGTAATATTTCCATAT
GAGGCACAGAATGATGACGAATTGACAATCAAGGAAGGAGATATAGTGACTCTCATCAATAAGG
ACTGCATCGATGTAGGCTGGTGGGAAGGAGAGCTCAATGGCAGACGAGGAGTGTTTCCTGACAA
CTTCGTGAAGTTACTTCCGTCAGACTTCGACAAGGAAGGGAATAGACCCAAGAAGCCGCCACCT
CCATCCGCTCCTGTCATCAAACAAGGGGCAGGTACCACAGAGAGAAAACATGAAATTAAAAAGA
TACCTCCTGAAAGACCGGAAACACTTCCAAACAGAACAGAAGAGAAAGAAAGACCAGAGAGAGA
GCCAAAACTGGATTTACAGAAGCCTTCTGTTCCTGCCATCCCACCTAAAAAGCCTCGTCCACCT
AAGACCAATTCTCTGAACAGACCCGGTGTGTTGCCCCCAAGAAGACCCGAGCGACCAGTGGGCC
CACTGACACACACCAGGGGTGACAGTTCAAAGATTGACTTGGCAGGCAGCACGCTCTCTGGCAT
CTTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGACCTAGAAGGTTTTGACTCCGTGATA
TCATCTACTGAAAAACTCAGCCACCCAACCACAAGCAGACCAAAAGCTACGGGAAGACGGCCTC
CTTCTCAGTCGCTCACATCTTCTTCCCTTTCAAGCCCTGATATCTTTGACTCCCCAAGTCCCGA
AGAAGATAAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAGACGTGTCAAAGAAGACTTCC
AGAACTGTTACCATATCCCAAGTGTCTGATAACAAGGCTTCCCTGCCACCCAAGCCAGGGACCA
TGGCAGCTGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAGTGGCTTCCTCTCCCATGTCATCCTC
TTTGGGAACAGCTGGACAACGAGCCAGTTCTCCATCTCTGTTCAGCGCAGAAGGAAAAGCAAAG
ACGGAGTCTGCAGTGAGCAGCCAGGCTGCCATCGAGGAGCTCAAGATGCAAGTCCGTGAGCTGA
GAACCATCATCGAGACCATGAAGGACCAGCAGAAACGTGAGATTAAGCAGTTACTGTCAGAATT
GGATGAAGAGAAAAAGATCCGGCTCCGATTGCAGATGGAGGTGAATGACATAAAGAAAGCTCTC
CAATCAAAATGAATACTTGATCATTGAAACGCCACATTATTCACCCCGAGTGCAAGACTCAGAT
ATTCTGCCCCAATCAAAATCATCTTGTGCCAAAAAAAAAAAAAATTAAAGGTTTGATTCATCGT
GTCCCTGTTTGAACATTCAGCACAAAAGTCTTCTTAGCACAACACAATTCTACCCAAGAGAAGA
CTCTTTCCCATGGTGTTGTCCTGGGTCCGGCAGTGGTTGTGATTTAGAGCCAAACGTGCTAAAG
GCTTTTCTACCTTGAGATCTCCGGCAAAATGAAAACTCAGGCAGTTTAGTCCATAGTAGTACTA
TTTTGATGATATTTTCCATTAACAAAATGTAATTTCGGATTATTCGTTTATAGGCTTTATAATG
TTATGGTTTTTTTTTTTTAAATCGTGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAACGTAG
TCAGAAGCAAGTGCCTCACTCACTTGCTGCAGATGGAGCAAATGCTGCCTGGCTTTGTATTCCC
CATTTAGGAGTCTATCACATATGCAATTTGAGGTCCAATCCTTCCCTTTCCCTGCCAGCTGACC
CCCACCACTCTAAGAGAAATTTTAGCTTATATATGATGGTATATTTACAAAAAGAGAAAGAAAA
AATCTGGTATTTGCAATGATCTGTGCCTTCTTTCTACCACCCTTTTGATTGGAGCTTTTGTGAT
GCAGCTACCAAGATTCCAAATAAAGAAATAAAAATCAGCCACTTTTATCCCTGTCCACTAGAGG
CCACTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAGGAATCCGCTGAGAAGTCT
GGCCTGCTCTTTGGTACCAGCTGTGACTTTTCCGTTTCTCCTGCTTTGAGGTTGTTCACGAGAC
TAGAAATGTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTT
TTACACCTATTGCGTGAACAGAATATGCATTATTAAAGCAAAAATAAATAAAAATAAAATGCAA
GTGAAAACGGGGGGAATTGGATTATTTCGTGCACTGGGTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTATTGTTTAAATTGTATTCACAGTGTTGTTTGCCTTGCTCACTT
GTAATCCCCTCCTCAGATCTAGGAGAATGGGAGGAGGGTCTTGTGGAAATGTAGCTATTGGATC
TTTCCTGCACTTATGGAATTGCTTTTTCTTTCCTAATGAAACTGCTGTTTGCTTGTCTGCTTTC
TCTTTATAGTATATGAACAGTTCAGCCTTAGACTATGTAACTGTTTTCTCATCTTTAGCTGAAA
ATTGGGGGGGAGGGGTCATTCTGTCCTGCAAGATTGTTGATGGGGTAGAGATGGAGGGGTGGTC
CCTTAATGATTCCCCAAATATGTGTGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCAT
TTTATAGTGAAACTGCTAAACATTAATAGATTTTCACTACCACAAAGAATGAGAATCAACGACA
CCAAAAGAATGATGCAAAAACTTCCCATTATTCATCACTGAAAACATAACGAATAAATGTCTCT
TCCTTTTTC

hide sequence

RefSeq Acc Id:

XM_006256930 ⟹ XP_006256992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,829,093 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,020,424 (-)	NCBI
Rnor_6.0	X	37,790,004 - 37,932,668 (-)	NCBI
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI

Sequence:

show sequence

ACACACACACAAGTAATCACTGGGTCCTGCCAATAAATACTCTGAATGTGTTCCTTGTCCACGT
GGTCACACCTTTGGGCACTGGGAGGCAACCTATATTACAGCAGGGATGTAGGCGAGGGAGGAGG
ACTTCTGGAGAAGCCACCCAAGCTATGAATCGGCCCTGGCTTCCTGAACCATAAACAAATGCAA
GCTTTGTTCTCCCTATTCCTCATTTGGTCCCAAGGATGACTCAGGATTAGGCTGGGTCCTCAGG
CTCCGCGCCTTTGGCTGTTTGAAGGAAGTGGGAGGATTTCAGGGTAGTTCTGGGACCTTTACAG
ACTGAAGAGACAAGGCTGGCTGCAGGATGGGAGAAGAGACAATTGGGAAGAAGTTACCTCCAGC
TACATCAACCCCAGACCCATCGAAAACAGAAATGGACAGCAGGACAAAGACCAAGGATTACTGC
AAAGTAATATTTCCATATGAGGCACAGAATGATGACGAATTGACAATCAAGGAAGGAGATATAG
TGACTCTCATCAATAAGGACTGCATCGATGTAGGCTGGTGGGAAGGAGAGCTCAATGGCAGACG
AGGAGTGTTTCCTGACAACTTCGTGAAGTTACTTCCGTCAGACTTCGACAAGGAAGGGAATAGA
CCCAAGAAGCCGCCACCTCCATCCGCTCCTGTCATCAAACAAGGGGCAGGTACCACAGAGAGAA
AACATGAAATTAAAAAGATACCTCCTGAAAGACCGGAAACACTTCCAAACAGAACAGAAGAGAA
AGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCTTCTGTTCCTGCCATCCCACCT
AAAAAGCCTCGTCCACCTAAGACCAATTCTCTGAACAGACCCGGTGTGTTGCCCCCAAGAAGAC
CCGAGCGACCAGTGGGCCCACTGACACACACCAGGGGTGACAGTTCAAAGATTGACTTGGCAGG
CAGCACGCTCTCTGGCATCTTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGACCTAGAA
GGTTTTGACTCCGTGATATCATCTACTGAAAAACTCAGCCACCCAACCACAAGCAGACCAAAAG
CTACGGGAAGACGGCCTCCTTCTCAGTCGCTCACATCTTCTTCCCTTTCAAGCCCTGATATCTT
TGACTCCCCAAGTCCCGAAGAAGATAAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAGAC
GTGTCAAAGAAGACTTCCAGAACTGTTACCATATCCCAAGTGTCTGATAACAAGGCTTCCCTGC
CACCCAAGCCAGGGACCATGGCAGCTGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAGTGGCTTC
CTCTCCCATGTCATCCTCTTTGGGAACAGCTGGACAACGAGCCAGTTCTCCATCTCTGTTCAGC
GCAGAAGGAAAAGCAAAGACGGAGTCTGCAGTGAGCAGCCAGGCTGCCATCGAGGAGCTCAAGA
TGCAAGTCCGTGAGCTGAGAACCATCATCGAGACCATGAAGGACCAGCAGAAACGTGAGATTAA
GCAGTTACTGTCAGAATTGGATGAAGAGAAAAAGATCCGGCTCCGATTGCAGATGGAGGTGAAT
GACATAAAGAAAGCTCTCCAATCAAAATGAATACTTGATCATTGAAACGCCACATTATTCACCC
CGAGTGCAAGACTCAGATATTCTGCCCCAATCAAAATCATCTTGTGCCAAAAAAAAAAAAAATT
AAAGGTTTGATTCATCGTGTCCCTGTTTGAACATTCAGCACAAAAGTCTTCTTAGCACAACACA
ATTCTACCCAAGAGAAGACTCTTTCCCATGGTGTTGTCCTGGGTCCGGCAGTGGTTGTGATTTA
GAGCCAAACGTGCTAAAGGCTTTTCTACCTTGAGATCTCCGGCAAAATGAAAACTCAGGCAGTT
TAGTCCATAGTAGTACTATTTTGATGATATTTTCCATTAACAAAATGTAATTTCGGATTATTCG
TTTATAGGCTTTATAATGTTATGGTTTTTTTTTTTTAAATCGTGTTTTGTCACAGATGCCCCTA
GTGTTTGTGCTAACGTAGTCAGAAGCAAGTGCCTCACTCACTTGCTGCAGATGGAGCAAATGCT
GCCTGGCTTTGTATTCCCCATTTAGGAGTCTATCACATATGCAATTTGAGGTCCAATCCTTCCC
TTTCCCTGCCAGCTGACCCCCACCACTCTAAGAGAAATTTTAGCTTATATATGATGGTATATTT
ACAAAAAGAGAAAGAAAAAATCTGGTATTTGCAATGATCTGTGCCTTCTTTCTACCACCCTTTT
GATTGGAGCTTTTGTGATGCAGCTACCAAGATTCCAAATAAAGAAATAAAAATCAGCCACTTTT
ATCCCTGTCCACTAGAGGCCACTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAG
GAATCCGCTGAGAAGTCTGGCCTGCTCTTTGGTACCAGCTGTGACTTTTCCGTTTCTCCTGCTT
TGAGGTTGTTCACGAGACTAGAAATGTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGTTAA
ACCCCTGCTTCCTGCCTTTTACACCTATTGCGTGAACAGAATATGCATTATTAAAGCAAAAATA
AATAAAAATAAAATGCAAGTGAAAACGGGGGGAATTGGATTATTTCGTGCACTGGGTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTGTTTAAATTGTATTCACAGTGT
TGTTTGCCTTGCTCACTTGTAATCCCCTCCTCAGATCTAGGAGAATGGGAGGAGGGTCTTGTGG
AAATGTAGCTATTGGATCTTTCCTGCACTTATGGAATTGCTTTTTCTTTCCTAATGAAACTGCT
GTTTGCTTGTCTGCTTTCTCTTTATAGTATATGAACAGTTCAGCCTTAGACTATGTAACTGTTT
TCTCATCTTTAGCTGAAAATTGGGGGGGAGGGGTCATTCTGTCCTGCAAGATTGTTGATGGGGT
AGAGATGGAGGGGTGGTCCCTTAATGATTCCCCAAATATGTGTGATGTGTTTCTAAACTGCTGC
TTTGTCTATTTCCTGCATTTTATAGTGAAACTGCTAAACATTAATAGATTTTCACTACCACAAA
GAATGAGAATCAACGACACCAAAAGAATGATGCAAAAACTTCCCATTATTCATCACTGAAAACA
TAACGAATAAATGTCTCTTCCTTTTTC

hide sequence

RefSeq Acc Id:

XM_006256931 ⟹ XP_006256993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,653 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,008 (-)	NCBI
Rnor_6.0	X	37,790,004 - 38,196,365 (-)	NCBI
Rnor_5.0	X	38,094,434 - 38,505,289 (-)	NCBI

Sequence:

show sequence

GCGCCTCTTAGGCGGGCGGAGCCGCTGAGCTTCGCCGCGGCGGGGAGGAGGGGAGAGCAGGCTC
AGAGGCGGCTGCAGGGCACTGGGCTGGGCGGTGCTTTTTTTTTTCTTTTCTTTCTTTCTTTTTT
TTTTTTTTTTTCGCAATTTCCACTTTCGGAGAGCAGGAAACCCGGAGCAGCCGGGTGCAGCGGG
GCCGCGATGCAGCAGCAGCAGCAGCAGGAGTCGCCCCAGGGCAGCAGCGGCAGCAGCAGCAGAA
GCAGTAGCGGGCGGCGCTGAGCTGCCACCACCGCCGCTGAGGAAGAAGCCGGCCAAGCAGCAGC
CGCGTCCCGACGCCCGCGCCCCCGATCCCCGCGCCGCGACCTCCGCGCCCCGAACCCTACGCCC
GGTTCCGCCAACTTTCACTCTGCTTTGGCGACTCAGCTCGGCTTGGCGCCAATGGTGGAGGCCA
TAGTGGAGTTTGATTACCAGGCCCAGCATGATGATGAGCTGACGATCAGCGTGGGTGAGGTCAT
CACCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAGGAGAGGTTTG
TTCCCTGACAACTTTGTAAGAGAAATAAAGAAGGATGTGAAGAAAGACCTTCTCTCTAACAAAG
CTCCTGAGAAGCCCATGCATGATGTGTCCAGTGGAAACTCTTTGCTTTCTTCTGAAACCATTTT
AAGAACCAATAAACGAGGAGAGCGACGGAGACGCCGATGCCAGGTGGCGTTCAGCTACCTGCCT
CAGAATGACGATGAGCTTGAGCTGAAAGTCGGGGACATCATAGAGGTTGTAGGAGAGGTGGAGG
AAGGATGGTGGGAAGGCGTACTCAATGGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGA
GCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCAGGATGAGCAGCTTTCCAAGTCAAGGCCT
GAAGGTTTCCTTCCAGCTTCTCTGCTGCCCTTTCCAGCTCATGGAGCAAAAGGAAAGACTACCT
TTGAAGGGACAATTCTGTACCGAGCTGCACCGGGAAAGACGGAGGGCCACAGACGCTATTACAG
CTTAAGAGAAACCACAGGCTCCGAGAGTGATGGAGGCGACTCAAGCAGTACCAAGTCTGAAGGC
GCCAATGGGACGGTGGCAACTGCAGCTATCCAGCCCAAGAAAGTTAAAGGAGTGGGGTTTGGAG
ATATTTTCAAAGACAAGCCAATTAAACTAAGACCAAGGTCGATTGAAGTGGAAAATGACTTCCT
GCCTGTAGAAAAGACAATTGGGAAGAAGTTACCTCCAGCTACATCAACCCCAGACCCATCGAAA
ACAGAAATGGACAGCAGGACAAAGACCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCAC
AGAATGATGACGAATTGACAATCAAGGAAGGAGATATAGTGACTCTCATCAATAAGGACTGCAT
CGATGTAGGCTGGTGGGAAGGAGAGCTCAATGGCAGACGAGGAGTGTTTCCTGACAACTTCGTG
AAGTTACTTCCGTCAGACTTCGACAAGGAAGGGAATAGACCCAAGAAGCCGCCACCTCCATCCG
CTCCTGTCATCAAACAAGGGGCAGGTACCACAGAGAGAAAACATGAAATTAAAAAGATACCTCC
TGAAAGACCGGAAACACTTCCAAACAGAACAGAAGAGAAAGAAAGACCAGAGAGAGAGCCAAAA
CTGGATTTACAGAAGCCTTCTGTTCCTGCCATCCCACCTAAAAAGCCTCGTCCACCTAAGACCA
ATTCTCTGAACAGACCCGGTGTGTTGCCCCCAAGAAGACCCGAGCGACCAGTGGGCCCACTGAC
ACACACCAGGGGTGACAGTTCAAAGATTGACTTGGCAGGCAGCACGCTCTCTGGCATCTTGGAT
AAGGACCTCTCAGACCGCAGCAATGATATTGACCTAGAAGGTTTTGACTCCGTGATATCATCTA
CTGAAAAACTCAGCCACCCAACCACAAGCAGACCAAAAGCTACGGGAAGACGGCCTCCTTCTCA
GTCGCTCACATCTTCTTCCCTTTCAAGCCCTGATATCTTTGACTCCCCAAGTCCCGAAGAAGAT
AAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAGACGTGTCAAAGAAGACTTCCAGAACTG
TTACCATATCCCAAGTGTCTGATAACAAGGCTTCCCTGCCACCCAAGCCAGGGACCATGGCAGC
TGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAGTGGCTTCCTCTCCCATGTCATCCTCTTTGGGA
ACAGCTGGACAACGAGCCAGTTCTCCATCTCTGTTCAGCGCAGAAGGAAAAGCAAAGACGGAGT
CTGCAGTGAGCAGCCAGGCTGCCATCGAGGAGCTCAAGATGCAAGTCCGTGAGCTGAGAACCAT
CATCGAGACCATGAAGGACCAGCAGAAACGTGAGATTAAGCAGTTACTGTCAGAATTGGATGAA
GAGAAAAAGATCCGGCTCCGATTGCAGATGGAGGTGAATGACATAAAGAAAGCTCTCCAATCAA
AATGAATACTTGATCATTGAAACGCCACATTATTCACCCCGAGTGCAAGACTCAGATATTCTGC
CCCAATCAAAATCATCTTGTGCCAAAAAAAAAAAAAATTAAAGGTTTGATTCATCGTGTCCCTG
TTTGAACATTCAGCACAAAAGTCTTCTTAGCACAACACAATTCTACCCAAGAGAAGACTCTTTC
CCATGGTGTTGTCCTGGGTCCGGCAGTGGTTGTGATTTAGAGCCAAACGTGCTAAAGGCTTTTC
TACCTTGAGATCTCCGGCAAAATGAAAACTCAGGCAGTTTAGTCCATAGTAGTACTATTTTGAT
GATATTTTCCATTAACAAAATGTAATTTCGGATTATTCGTTTATAGGCTTTATAATGTTATGGT
TTTTTTTTTTTAAATCGTGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAACGTAGTCAGAAG
CAAGTGCCTCACTCACTTGCTGCAGATGGAGCAAATGCTGCCTGGCTTTGTATTCCCCATTTAG
GAGTCTATCACATATGCAATTTGAGGTCCAATCCTTCCCTTTCCCTGCCAGCTGACCCCCACCA
CTCTAAGAGAAATTTTAGCTTATATATGATGGTATATTTACAAAAAGAGAAAGAAAAAATCTGG
TATTTGCAATGATCTGTGCCTTCTTTCTACCACCCTTTTGATTGGAGCTTTTGTGATGCAGCTA
CCAAGATTCCAAATAAAGAAATAAAAATCAGCCACTTTTATCCCTGTCCACTAGAGGCCACTGT
CTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAGGAATCCGCTGAGAAGTCTGGCCTGC
TCTTTGGTACCAGCTGTGACTTTTCCGTTTCTCCTGCTTTGAGGTTGTTCACGAGACTAGAAAT
GTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTTTTACACC
TATTGCGTGAACAGAATATGCATTATTAAAGCAAAAATAAATAAAAATAAAATGCAAGTGAAAA
CGGGGGGAATTGGATTATTTCGTGCACTGGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTATTGTTTAAATTGTATTCACAGTGTTGTTTGCCTTGCTCACTTGTAATCC
CCTCCTCAGATCTAGGAGAATGGGAGGAGGGTCTTGTGGAAATGTAGCTATTGGATCTTTCCTG
CACTTATGGAATTGCTTTTTCTTTCCTAATGAAACTGCTGTTTGCTTGTCTGCTTTCTCTTTAT
AGTATATGAACAGTTCAGCCTTAGACTATGTAACTGTTTTCTCATCTTTAGCTGAAAATTGGGG
GGGAGGGGTCATTCTGTCCTGCAAGATTGTTGATGGGGTAGAGATGGAGGGGTGGTCCCTTAAT
GATTCCCCAAATATGTGTGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCATTTTATAG
TGAAACTGCTAAACATTAATAGATTTTCACTACCACAAAGAATGAGAATCAACGACACCAAAAG
AATGATGCAAAAACTTCCCATTATTCATCACTGAAAACATAACGAATAAATGTCTCTTCCTTTT
TC

hide sequence

RefSeq Acc Id:

XM_008773199 ⟹ XP_008771421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,719,604 (-)	NCBI
mRatBN7.2	X	34,877,862 - 34,910,937 (-)	NCBI
Rnor_6.0	X	37,790,004 - 37,823,989 (-)	NCBI

Sequence:

show sequence

ATCCCAGTAGTTCTCAGCTGTCTGCCCTCTGGTGAGGAGTATGTGAGAGTTGGATCCAATGCTT
CCTTTCAGAAAGAGAGTTGGACTTCCTTCCATGGTTCCATCCCCACAGACGTGCTGGGGTGACA
GTTCAAAGATTGACTTGGCAGGCAGCACGCTCTCTGGCATCTTGGATAAGGACCTCTCAGACCG
CAGCAATGATATTGACCTAGAAGGTTTTGACTCCGTGATATCATCTACTGAAAAACTCAGCCAC
CCAACCACAAGCAGACCAAAAGCTACGGGAAGACGGCCTCCTTCTCAGTCGCTCACATCTTCTT
CCCTTTCAAGCCCTGATATCTTTGACTCCCCAAGTCCCGAAGAAGATAAAGAGGAACACATTTC
GCTTGCGCACAGAGGAATAGACGTGTCAAAGAAGACTTCCAGAACTGTTACCATATCCCAAGTG
TCTGATAACAAGGCTTCCCTGCCACCCAAGCCAGGGACCATGGCAGCTGCCAGCAGTGGGCCAG
CCTCTCTCTCTTCAGTGGCTTCCTCTCCCATGTCATCCTCTTTGGGAACAGCTGGACAACGAGC
CAGTTCTCCATCTCTGTTCAGCGCAGAAGGAAAAGCAAAGACGGAGTCTGCAGTGAGCAGCCAG
GCTGCCATCGAGGAGCTCAAGATGCAAGTCCGTGAGCTGAGAACCATCATCGAGACCATGAAGG
ACCAGCAGAAACGTGAGATTAAGCAGTTACTGTCAGAATTGGATGAAGAGAAAAAGATCCGGCT
CCGATTGCAGATGGAGGTGAATGACATAAAGAAAGCTCTCCAATCAAAATGAATACTTGATCAT
TGAAACGCCACATTATTCACCCCGAGTGCAAGACTCAGATATTCTGCCCCAATCAAAATCATCT
TGTGCCAAAAAAAAAAAAAATTAAAGGTTTGATTCATCGTGTCCCTGTTTGAACATTCAGCACA
AAAGTCTTCTTAGCACAACACAATTCTACCCAAGAGAAGACTCTTTCCCATGGTGTTGTCCTGG
GTCCGGCAGTGGTTGTGATTTAGAGCCAAACGTGCTAAAGGCTTTTCTACCTTGAGATCTCCGG
CAAAATGAAAACTCAGGCAGTTTAGTCCATAGTAGTACTATTTTGATGATATTTTCCATTAACA
AAATGTAATTTCGGATTATTCGTTTATAGGCTTTATAATGTTATGGTTTTTTTTTTTTAAATCG
TGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAACGTAGTCAGAAGCAAGTGCCTCACTCACT
TGCTGCAGATGGAGCAAATGCTGCCTGGCTTTGTATTCCCCATTTAGGAGTCTATCACATATGC
AATTTGAGGTCCAATCCTTCCCTTTCCCTGCCAGCTGACCCCCACCACTCTAAGAGAAATTTTA
GCTTATATATGATGGTATATTTACAAAAAGAGAAAGAAAAAATCTGGTATTTGCAATGATCTGT
GCCTTCTTTCTACCACCCTTTTGATTGGAGCTTTTGTGATGCAGCTACCAAGATTCCAAATAAA
GAAATAAAAATCAGCCACTTTTATCCCTGTCCACTAGAGGCCACTGTCTTCACAGCTTCTCTCA
CCCTAGCCAAAGGTCCTAAGAGGAATCCGCTGAGAAGTCTGGCCTGCTCTTTGGTACCAGCTGT
GACTTTTCCGTTTCTCCTGCTTTGAGGTTGTTCACGAGACTAGAAATGTCATTCCAGCTTGATT
GTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTTTTACACCTATTGCGTGAACAGAAT
ATGCATTATTAAAGCAAAAATAAATAAAAATAAAATGCAAGTGAAAACGGGGGGAATTGGATTA
TTTCGTGCACTGGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATT
GTTTAAATTGTATTCACAGTGTTGTTTGCCTTGCTCACTTGTAATCCCCTCCTCAGATCTAGGA
GAATGGGAGGAGGGTCTTGTGGAAATGTAGCTATTGGATCTTTCCTGCACTTATGGAATTGCTT
TTTCTTTCCTAATGAAACTGCTGTTTGCTTGTCTGCTTTCTCTTTATAGTATATGAACAGTTCA
GCCTTAGACTATGTAACTGTTTTCTCATCTTTAGCTGAAAATTGGGGGGGAGGGGTCATTCTGT
CCTGCAAGATTGTTGATGGGGTAGAGATGGAGGGGTGGTCCCTTAATGATTCCCCAAATATGTG
TGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCATTTTATAGTGAAACTGCTAAACATT
AATAGATTTTCACTACCACAAAGAATGAGAATCAACGACACCAAAAGAATGATGCAAAAACTTC
CCATTATTCATCACTGAAAACATAACGAATAAATGTCTCTTCCTTTTTC

hide sequence

RefSeq Acc Id:

XM_008773200 ⟹ XP_008771422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,717,815 (-)	NCBI
mRatBN7.2	X	34,877,862 - 34,909,151 (-)	NCBI
Rnor_6.0	X	37,790,004 - 37,822,257 (-)	NCBI

Sequence:

show sequence

GGCAGGAACAGGCCTGTATTGCATCCTGTGGAGACAGCAGGAGGGTTTGTGGCTAGAAGTACAT
TGGCAAAGGGGGTGACAGTTCAAAGATTGACTTGGCAGGCAGCACGCTCTCTGGCATCTTGGAT
AAGGACCTCTCAGACCGCAGCAATGATATTGACCTAGAAGGTTTTGACTCCGTGATATCATCTA
CTGAAAAACTCAGCCACCCAACCACAAGCAGACCAAAAGCTACGGGAAGACGGCCTCCTTCTCA
GTCGCTCACATCTTCTTCCCTTTCAAGCCCTGATATCTTTGACTCCCCAAGTCCCGAAGAAGAT
AAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAGACGTGTCAAAGAAGACTTCCAGAACTG
TTACCATATCCCAAGTGTCTGATAACAAGGCTTCCCTGCCACCCAAGCCAGGGACCATGGCAGC
TGCCAGCAGTGGGCCAGCCTCTCTCTCTTCAGTGGCTTCCTCTCCCATGTCATCCTCTTTGGGA
ACAGCTGGACAACGAGCCAGTTCTCCATCTCTGTTCAGCGCAGAAGGAAAAGCAAAGACGGAGT
CTGCAGTGAGCAGCCAGGCTGCCATCGAGGAGCTCAAGATGCAAGTCCGTGAGCTGAGAACCAT
CATCGAGACCATGAAGGACCAGCAGAAACGTGAGATTAAGCAGTTACTGTCAGAATTGGATGAA
GAGAAAAAGATCCGGCTCCGATTGCAGATGGAGGTGAATGACATAAAGAAAGCTCTCCAATCAA
AATGAATACTTGATCATTGAAACGCCACATTATTCACCCCGAGTGCAAGACTCAGATATTCTGC
CCCAATCAAAATCATCTTGTGCCAAAAAAAAAAAAAATTAAAGGTTTGATTCATCGTGTCCCTG
TTTGAACATTCAGCACAAAAGTCTTCTTAGCACAACACAATTCTACCCAAGAGAAGACTCTTTC
CCATGGTGTTGTCCTGGGTCCGGCAGTGGTTGTGATTTAGAGCCAAACGTGCTAAAGGCTTTTC
TACCTTGAGATCTCCGGCAAAATGAAAACTCAGGCAGTTTAGTCCATAGTAGTACTATTTTGAT
GATATTTTCCATTAACAAAATGTAATTTCGGATTATTCGTTTATAGGCTTTATAATGTTATGGT
TTTTTTTTTTTAAATCGTGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAACGTAGTCAGAAG
CAAGTGCCTCACTCACTTGCTGCAGATGGAGCAAATGCTGCCTGGCTTTGTATTCCCCATTTAG
GAGTCTATCACATATGCAATTTGAGGTCCAATCCTTCCCTTTCCCTGCCAGCTGACCCCCACCA
CTCTAAGAGAAATTTTAGCTTATATATGATGGTATATTTACAAAAAGAGAAAGAAAAAATCTGG
TATTTGCAATGATCTGTGCCTTCTTTCTACCACCCTTTTGATTGGAGCTTTTGTGATGCAGCTA
CCAAGATTCCAAATAAAGAAATAAAAATCAGCCACTTTTATCCCTGTCCACTAGAGGCCACTGT
CTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAGGAATCCGCTGAGAAGTCTGGCCTGC
TCTTTGGTACCAGCTGTGACTTTTCCGTTTCTCCTGCTTTGAGGTTGTTCACGAGACTAGAAAT
GTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTTTTACACC
TATTGCGTGAACAGAATATGCATTATTAAAGCAAAAATAAATAAAAATAAAATGCAAGTGAAAA
CGGGGGGAATTGGATTATTTCGTGCACTGGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTATTGTTTAAATTGTATTCACAGTGTTGTTTGCCTTGCTCACTTGTAATCC
CCTCCTCAGATCTAGGAGAATGGGAGGAGGGTCTTGTGGAAATGTAGCTATTGGATCTTTCCTG
CACTTATGGAATTGCTTTTTCTTTCCTAATGAAACTGCTGTTTGCTTGTCTGCTTTCTCTTTAT
AGTATATGAACAGTTCAGCCTTAGACTATGTAACTGTTTTCTCATCTTTAGCTGAAAATTGGGG
GGGAGGGGTCATTCTGTCCTGCAAGATTGTTGATGGGGTAGAGATGGAGGGGTGGTCCCTTAAT
GATTCCCCAAATATGTGTGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCATTTTATAG
TGAAACTGCTAAACATTAATAGATTTTCACTACCACAAAGAATGAGAATCAACGACACCAAAAG
AATGATGCAAAAACTTCCCATTATTCATCACTGAAAACATAACGAATAAATGTCTCTTCCTTTT
TC

hide sequence

RefSeq Acc Id:

XM_039100100 ⟹ XP_038956028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,652 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,007 (-)	NCBI

RefSeq Acc Id:

XM_039100101 ⟹ XP_038956029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,651 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,006 (-)	NCBI

RefSeq Acc Id:

XM_039100102 ⟹ XP_038956030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,658 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,013 (-)	NCBI

RefSeq Acc Id:

XM_039100103 ⟹ XP_038956031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,656 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,012 (-)	NCBI

RefSeq Acc Id:

XM_039100104 ⟹ XP_038956032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 39,031,649 (-)	NCBI
mRatBN7.2	X	34,877,862 - 35,223,005 (-)	NCBI

RefSeq Acc Id:

XM_063280332 ⟹ XP_063136402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,953,932 (-)	NCBI

RefSeq Acc Id:

XM_063280333 ⟹ XP_063136403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,953,946 (-)	NCBI

RefSeq Acc Id:

XM_063280334 ⟹ XP_063136404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,829,077 (-)	NCBI

RefSeq Acc Id:

XM_063280335 ⟹ XP_063136405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,719,605 (-)	NCBI

RefSeq Acc Id:

XM_063280336 ⟹ XP_063136406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	38,686,530 - 38,717,817 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_445812	(Get FASTA)	NCBI Sequence Viewer
	XP_006256986	(Get FASTA)	NCBI Sequence Viewer
	XP_006256991	(Get FASTA)	NCBI Sequence Viewer
	XP_006256992	(Get FASTA)	NCBI Sequence Viewer
	XP_006256993	(Get FASTA)	NCBI Sequence Viewer
	XP_008771421	(Get FASTA)	NCBI Sequence Viewer
	XP_008771422	(Get FASTA)	NCBI Sequence Viewer
	XP_038956028	(Get FASTA)	NCBI Sequence Viewer
	XP_038956029	(Get FASTA)	NCBI Sequence Viewer
	XP_038956030	(Get FASTA)	NCBI Sequence Viewer
	XP_038956031	(Get FASTA)	NCBI Sequence Viewer
	XP_038956032	(Get FASTA)	NCBI Sequence Viewer
	XP_063136402	(Get FASTA)	NCBI Sequence Viewer
	XP_063136403	(Get FASTA)	NCBI Sequence Viewer
	XP_063136404	(Get FASTA)	NCBI Sequence Viewer
	XP_063136405	(Get FASTA)	NCBI Sequence Viewer
	XP_063136406	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF36522	(Get FASTA)	NCBI Sequence Viewer
	AAF43035	(Get FASTA)	NCBI Sequence Viewer
	AAF43036	(Get FASTA)	NCBI Sequence Viewer
	AAH70877	(Get FASTA)	NCBI Sequence Viewer
	AAK51625	(Get FASTA)	NCBI Sequence Viewer
	AAK51626	(Get FASTA)	NCBI Sequence Viewer
	AAK51627	(Get FASTA)	NCBI Sequence Viewer
	AAK51628	(Get FASTA)	NCBI Sequence Viewer
	AAK51629	(Get FASTA)	NCBI Sequence Viewer
	EDL96135	(Get FASTA)	NCBI Sequence Viewer
	EDL96136	(Get FASTA)	NCBI Sequence Viewer
	EDL96137	(Get FASTA)	NCBI Sequence Viewer
	EDL96138	(Get FASTA)	NCBI Sequence Viewer
	EDL96139	(Get FASTA)	NCBI Sequence Viewer
	EDL96140	(Get FASTA)	NCBI Sequence Viewer
	EDL96141	(Get FASTA)	NCBI Sequence Viewer
	EDL96142	(Get FASTA)	NCBI Sequence Viewer
	EDL96143	(Get FASTA)	NCBI Sequence Viewer
	EDL96144	(Get FASTA)	NCBI Sequence Viewer
	EDL96145	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006438
	ENSRNOP00000006741
	ENSRNOP00000006741.7
	ENSRNOP00000067100
	ENSRNOP00000083463
	ENSRNOP00000083463.1
	ENSRNOP00000089759
	ENSRNOP00000093532
	ENSRNOP00000107405
GenBank Protein	Q925Q9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445812 ⟸ NM_053360

- UniProtKB:

Q6IRL5 (UniProtKB/TrEMBL), A6IPM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVEAIVEFDYQAQHDDELTISVGEVITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKDVKKDL
LSNKAPEKPMHDVSSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVV
GEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSSLRETTGSESDGGDSSSTK
SEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPATSTPD
PSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPD
NFVKLLPSDFDKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKERPER
EPKLDLQKPSVPAIPPKKPRPPKTNSLNRPGVLPPRRPERPVGPLTHTRGDSSKIDLAGSTLSG
ILDKDLSDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSP
EEDKEEHISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAAASSGPASLSSVASSPMSS
SLGTAGQRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSE
LDEEKKIRLRLQMEVNDIKKALQSK

hide sequence

RefSeq Acc Id:	XP_006256993 ⟸ XM_006256931
- Peptide Label:	isoform X1
- UniProtKB:	Q9JKQ1 (UniProtKB/Swiss-Prot), Q9JKQ0 (UniProtKB/Swiss-Prot), Q925R3 (UniProtKB/Swiss-Prot), Q925R2 (UniProtKB/Swiss-Prot), Q925R1 (UniProtKB/Swiss-Prot), Q925R0 (UniProtKB/Swiss-Prot), Q9JLU9 (UniProtKB/Swiss-Prot), Q925Q9 (UniProtKB/Swiss-Prot), A6IPL9 (UniProtKB/TrEMBL), A6IPM1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVEAIVEFDYQAQHDDELTISVGEVITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKDVKKDL LSNKAPEKPMHDVSSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVV GEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSRPEGFLPASLLPFPAHGAK GKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKG VGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPATSTPDPSKTEMDSRTKTKDYCKVIF PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPSDFDKEGNRPKKP PPPSAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPR PPKTNSLNRPGVLPPRRPERPVGPLTHTRGDSSKIDLAGSTLSGILDKDLSDRSNDIDLEGFDS VISSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKK TSRTVTISQVSDNKASLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSAEGK AKTESAVSSQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKK ALQSK hide sequence

RefSeq Acc Id:	XP_006256991 ⟸ XM_006256929
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A8U3 (UniProtKB/TrEMBL), A6IPM2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSQEIKKDVKKDLLSNKAPEKPMHDVSSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQND DELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSSLRET TGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEK TIGKKLPPATSTPDPSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW WEGELNGRRGVFPDNFVKLLPSDFDKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPE TLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLNRPGVLPPRRPERPVGPLTHTRG DSSKIDLAGSTLSGILDKDLSDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQSLTS SSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAAASSG PASLSSVASSPMSSSLGTAGQRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVRELRTIIETM KDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK hide sequence

RefSeq Acc Id:	XP_006256986 ⟸ XM_006256924
- Peptide Label:	isoform X4
- UniProtKB:	A6IPM1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSQEIKKDVKKDLLSNKAPEKPMHDVSSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQND DELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSRPEGF LPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANG TVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPATSTPDPSKTEM DSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL PSDFDKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKERPEREPKLDL QKPSVPAIPPKKPRPPKTNSLNRPGVLPPRRPERPVGPLTHTRGDSSKIDLAGSTLSGILDKDL SDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEE HISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAG QRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSELDEEKK IRLRLQMEVNDIKKALQSK hide sequence

RefSeq Acc Id:	XP_006256992 ⟸ XM_006256930
- Peptide Label:	isoform X11
- UniProtKB:	A6IPM3 (UniProtKB/TrEMBL), A6IPM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGEETIGKKLPPATSTPDPSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCI DVGWWEGELNGRRGVFPDNFVKLLPSDFDKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPP ERPETLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLNRPGVLPPRRPERPVGPLT HTRGDSSKIDLAGSTLSGILDKDLSDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQ SLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAA ASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVRELRTI IETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK hide sequence

RefSeq Acc Id:

XP_008771421 ⟸ XM_008773199

- Peptide Label:

isoform X13

- Sequence:

show sequence

MLPFRKRVGLPSMVPSPQTCWGDSSKIDLAGSTLSGILDKDLSDRSNDIDLEGFDSVISSTEKL
SHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSRTVTIS
QVSDNKASLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSAEGKAKTESAVS
SQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK

hide sequence

RefSeq Acc Id:	XP_008771422 ⟸ XM_008773200
- Peptide Label:	isoform X15
- UniProtKB:	A6IPM6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVREL RTIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK hide sequence

Ensembl Acc Id:

ENSRNOP00000006438 ⟸ ENSRNOT00000006438

Ensembl Acc Id:

ENSRNOP00000006741 ⟸ ENSRNOT00000006741

Ensembl Acc Id:

ENSRNOP00000067100 ⟸ ENSRNOT00000074898

RefSeq Acc Id:	XP_038956030 ⟸ XM_039100102
- Peptide Label:	isoform X5
- UniProtKB:	A6IPM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956031 ⟸ XM_039100103
- Peptide Label:	isoform X7
- UniProtKB:	A6IPM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956028 ⟸ XM_039100100
- Peptide Label:	isoform X2
- UniProtKB:	M0RBZ7 (UniProtKB/TrEMBL), A6IPM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956029 ⟸ XM_039100101
- Peptide Label:	isoform X3
- UniProtKB:	A0A0H2UHD8 (UniProtKB/TrEMBL), A6IPM0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956032 ⟸ XM_039100104
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6AJT1 (UniProtKB/TrEMBL), A6IPM0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083463 ⟸ ENSRNOT00000096669

Ensembl Acc Id:

ENSRNOP00000089759 ⟸ ENSRNOT00000113102

Ensembl Acc Id:

ENSRNOP00000093532 ⟸ ENSRNOT00000095370

RefSeq Acc Id:	XP_063136403 ⟸ XM_063280333
- Peptide Label:	isoform X10
- UniProtKB:	A6IPM2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136402 ⟸ XM_063280332
- Peptide Label:	isoform X6
- UniProtKB:	A6IPM2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136404 ⟸ XM_063280334
- Peptide Label:	isoform X12
- UniProtKB:	A6IPM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136405 ⟸ XM_063280335
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063136406 ⟸ XM_063280336
- Peptide Label:	isoform X15
- UniProtKB:	A6IPM6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109713 ⟸ ENSRNOT00000165508

Ensembl Acc Id:

ENSRNOP00000107405 ⟸ ENSRNOT00000142445

Protein Domains

SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q925Q9-F1-model_v2	AlphaFold	Q925Q9	1-709	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620904	AgrOrtholog
BioCyc Gene	G2FUF-2489	BioCyc
Ensembl Genes	ENSRNOG00000004322	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006438	ENTREZGENE
	ENSRNOT00000006741	ENTREZGENE
	ENSRNOT00000006741.8	UniProtKB/Swiss-Prot
	ENSRNOT00000074898	ENTREZGENE
	ENSRNOT00000095370	ENTREZGENE
	ENSRNOT00000096669	ENTREZGENE
	ENSRNOT00000096669.1	UniProtKB/Swiss-Prot
	ENSRNOT00000113102	ENTREZGENE
	ENSRNOT00000142445	ENTREZGENE
Gene3D-CATH	SH3 Domains	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7096160	IMAGE-MGC_LOAD
InterPro	CIN85_SH3_1	UniProtKB/Swiss-Prot
	CIN85_SH3_2	UniProtKB/Swiss-Prot
	CIN85_SH3_3	UniProtKB/Swiss-Prot
	Endophilin_SH3RF	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:84357	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91419	IMAGE-MGC_LOAD
NCBI Gene	84357	ENTREZGENE
PANTHER	PTHR14167:SF6	UniProtKB/Swiss-Prot
	SH3 DOMAIN-CONTAINING	UniProtKB/Swiss-Prot
Pfam	SH3_9	UniProtKB/Swiss-Prot
PhenoGen	Sh3kbp1	PhenoGen
PRINTS	P67PHOX	UniProtKB/Swiss-Prot
	SH3DOMAIN	UniProtKB/Swiss-Prot
PROSITE	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004322	RatGTEx
SMART	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50044	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8U3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJT1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LZJ9_RAT	UniProtKB/TrEMBL
	A6IPL9	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM0	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM1	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM2	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM3	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM4	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM6	ENTREZGENE, UniProtKB/TrEMBL
	A6IPM8_RAT	UniProtKB/TrEMBL
	M0RBZ7	ENTREZGENE, UniProtKB/TrEMBL
	Q6IRL5	ENTREZGENE, UniProtKB/TrEMBL
	Q925Q9	ENTREZGENE
	Q925R0	ENTREZGENE
	Q925R1	ENTREZGENE
	Q925R2	ENTREZGENE
	Q925R3	ENTREZGENE
	Q9JKQ0	ENTREZGENE
	Q9JKQ1	ENTREZGENE
	Q9JLU9	ENTREZGENE
	SH3K1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q925R0	UniProtKB/Swiss-Prot
	Q925R1	UniProtKB/Swiss-Prot
	Q925R2	UniProtKB/Swiss-Prot
	Q925R3	UniProtKB/Swiss-Prot
	Q9JKQ0	UniProtKB/Swiss-Prot
	Q9JKQ1	UniProtKB/Swiss-Prot
	Q9JLU9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Sh3kbp1	SH3 domain-containing kinase-binding protein 1	Sh3kbp1	SH3-domain kinase binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-26	Sh3kbp1	SH3-domain kinase binding protein 1			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Sh3kbp1	SH3-domain kinase binding protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in tumorigenic astrocytes	729728

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)