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Gene: Rab29 (RAB29, member RAS oncogene family) Rattus norvegicus

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Symbol:

Rab29

Name:

RAB29, member RAS oncogene family

RGD ID:

620892

Description:

Enables GDP binding activity and GTP binding activity. Involved in regulation of retrograde transport, endosome to Golgi. Located in Golgi apparatus. Orthologous to human RAB29 (RAB29, member RAS oncogene family); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC93212; rab-7-like protein 1; RAB7, member RAS oncogene family-like 1; Rab7l1; Ras-related GTP-binding protein Rab29; ras-related protein Rab-29; ras-related protein Rab-7L1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB29 (RAB29, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Rab29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rab29 (RAB29, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ANKRD13A (ankyrin repeat domain 13A)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rab29 (RAB29, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RAB29 (RAB29, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	glo-1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rab29	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,859,930 - 45,865,468 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,859,961 - 45,865,610 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,307,757 - 43,313,420 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,307,775 - 43,313,417 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,911,114 - 45,916,526 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,199,254 - 47,204,667 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,464,223 - 44,469,637 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,644,575 - 48,650,229 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,644,604 - 48,650,220 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,717,859 - 53,723,127 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	13	43,645,679 - 43,651,039 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

belinostat (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fluoranthene (ISO)

fluoxetine (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

lead(0) (ISO)

linsidomine (EXP)

methyl methanesulfonate (ISO)

Monobutylphthalate (ISO)

nickel atom (ISO)

nimesulide (EXP)

Nutlin-3 (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

poly(I:C) (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

tipifarnib (EXP)

titanium dioxide (ISO)

topotecan (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cellular detoxification (IEA,ISO)

cilium assembly (ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (ISO)

Golgi organization (IEA,ISO,ISS)

host-mediated perturbation of viral process (IEA)

intracellular protein transport (IBA)

melanosome organization (IBA)

mitochondrion organization (IEA,ISO)

negative regulation of neuron projection development (IEA,ISO)

positive regulation of intracellular protein transport (IEA,ISO,ISS)

positive regulation of receptor recycling (IEA,ISO)

positive regulation of T cell receptor signaling pathway (IEA,ISO)

protein localization to ciliary membrane (ISO)

protein localization to membrane (IEA,ISO)

protein transport (IEA)

regulation of motile cilium assembly (IEA,ISO)

regulation of retrograde transport, endosome to Golgi (IMP)

response to bacterium (IEA)

retrograde transport, endosome to Golgi (IEA,ISO,ISS)

synapse assembly (IEA,ISO)

T cell activation (IEA,ISO)

vesicle-mediated transport (IEA)

Cellular Component

cis-Golgi network (IEA,ISO)

cytoplasm (IEA,ISO,ISS)

cytoskeleton (IEA)

cytosol (IEA,ISO)

early endosome (IEA,ISO)

endomembrane system (IBA,IEA)

Golgi apparatus (IDA,IEA,ISO)

Golgi membrane (IEA)

intracellular vesicle (IEA,ISO)

melanosome (IBA)

membrane (IEA)

mitochondrion (IEA,ISO)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

recycling endosome (IEA,ISO)

trans-Golgi network (IBA,IEA,ISO,ISS)

vacuole (IEA,ISO)

vesicle (IEA,ISO)

Molecular Function

dynein complex binding (IEA,ISO)

G protein activity (IEA,ISO,ISS)

GDP binding (IDA,IEA,ISO)

GTP binding (IDA,IEA,ISO)

GTPase activity (IBA,IEA)

kinase activator activity (IEA,ISO)

kinesin binding (IEA,ISO)

nucleotide binding (IEA)

protein binding (IPI,ISO)

small GTPase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	RAB7L1 interacts with LRRK2 to modify intraneuronal protein sorting and Parkinson's disease risk.	MacLeod DA, etal., Neuron. 2013 Feb 6;77(3):425-39. doi: 10.1016/j.neuron.2012.11.033.
4.	Cloning of two splicing variants of the novel Ras-related GTPase Rab29 which is predominantly expressed in kidney.	Massmann S, etal., Biochim Biophys Acta 1997 May 2;1352(1):48-55.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19056867	PMID:19376974	PMID:22042847	PMID:23376485	PMID:24510904	PMID:24788816	PMID:25767741	PMID:26021297	PMID:32691280

Genomics

Comparative Map Data

Rab29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,859,930 - 45,865,468 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,859,961 - 45,865,610 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,307,757 - 43,313,420 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,307,775 - 43,313,417 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,911,114 - 45,916,526 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,199,254 - 47,204,667 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,464,223 - 44,469,637 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,644,575 - 48,650,229 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,644,604 - 48,650,220 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,717,859 - 53,723,127 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	13	43,645,679 - 43,651,039 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

RAB29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,767,986 - 205,775,482 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,767,986 - 205,775,482 (-)	Ensembl			hg38	GRCh38
GRCh37	1	205,737,114 - 205,744,610 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	204,004,301 - 204,010,747 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	202,469,334 - 202,475,781	NCBI
Celera	1	178,873,347 - 178,880,842 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	176,901,814 - 176,909,309 (-)	NCBI		HuRef
CHM1_1	1	207,160,617 - 207,168,113 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	205,032,659 - 205,040,160 (-)	NCBI		T2T-CHM13v2.0

Rab29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,795,004 - 131,801,003 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,794,962 - 131,800,625 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	131,867,210 - 131,872,887 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	131,867,224 - 131,872,887 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	133,763,854 - 133,769,464 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,694,838 - 133,700,431 (+)	NCBI		MGSCv36	mm8
Celera	1	134,471,765 - 134,477,377 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.21	NCBI

Rab29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,462,534 - 41,468,948 (-)	Ensembl
ChiLan1.0	NW_004955406	41,452,733 - 41,468,467 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAB29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	43,594,185 - 43,601,672 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	43,559,548 - 43,567,033 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,377,018 - 181,384,496 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	185,661,317 - 185,668,077 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	185,661,317 - 185,668,066 (-)	Ensembl			panPan2	panpan1.1

RAB29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,196,618 - 2,204,150 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,198,040 - 2,203,896 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,289,485 - 2,297,013 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,193,762 - 2,201,285 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,193,773 - 2,201,496 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,188,157 - 2,195,683 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,579,882 - 2,587,380 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,780,284 - 2,787,813 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rab29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	69,432,792 - 69,439,301 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,673,065 - 6,683,468 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,673,092 - 6,679,715 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,448,953 - 66,458,724 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	66,448,854 - 66,458,766 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	72,715,501 - 72,725,155 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	23,572,001 - 23,579,881 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	23,572,542 - 23,577,695 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	24,267,454 - 24,276,009 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	5,478,707 - 5,483,475 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	5,478,570 - 5,483,473 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rab29
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	3,965,324 - 3,970,881 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rab29
89 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	45
Count of miRNA genes:	39
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000073669
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH140199

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,312,981 - 43,313,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,649,791 - 48,649,978	NCBI	Rnor6.0
Rnor_5.0	13	53,722,689 - 53,722,876	UniSTS	Rnor5.0
Celera	13	43,650,752 - 43,650,939	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_133590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC081732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X96663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073669 ⟹ ENSRNOP00000067600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,859,961 - 45,865,610 (+)	Ensembl
mRatBN7.2 Ensembl	13	43,307,839 - 43,313,269 (+)	Ensembl
Rnor_6.0 Ensembl	13	48,644,668 - 48,650,078 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084259 ⟹ ENSRNOP00000069623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,859,961 - 45,865,610 (+)	Ensembl
mRatBN7.2 Ensembl	13	43,307,775 - 43,313,417 (+)	Ensembl
Rnor_6.0 Ensembl	13	48,644,604 - 48,650,220 (+)	Ensembl

RefSeq Acc Id:

NM_133590 ⟹ NP_598274

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,860,038 - 45,865,466 (+)	NCBI
mRatBN7.2	13	43,307,839 - 43,313,269 (+)	NCBI
Rnor_6.0	13	48,644,668 - 48,650,078 (+)	NCBI
Rnor_5.0	13	53,717,859 - 53,723,127 (+)	NCBI
Celera	13	43,645,679 - 43,651,039 (+)	RGD

Sequence:

show sequence

ATTTTGTGTATGTGGTCGGAGGAAGGGCCCAGGTCCTCTGTACCTCTCCAAGCAAGGTGCTGGC
CACGGTTCAACTCTGGCGAGCTGCTCGGAAGTCCCTGACAAGAAGGTGCCAACCGCGGGGGGTC
GAGCTCGTACCCGCCCCACCCAGGCTGCGGCCGCGCGGGGAGGAAGCGCACCCAGGCCGAGTGC
AAAAGTTTCCTTTTCTGCTTTCCAGTTAGAGAAGCTTCAACCAACCGAGGGTGGGGATGTCTGA
CTTCAACTGGAAGAGAACCCGGGAGCCAAAGGGGTTAAAATAAGCGAATTACCGGGAAAACAAA
CAAAAAACTCCCCACCACTAGCCATGGGCAGCCGAGATCACCTGTTTAAAGTGCTGGTGGTGGG
GGACGCCGCGGTGGGTAAGACGTCACTGGTCCAGCGCTACTCCCAGGACAGCTTCAGCAAGCAC
TACAAGTCTACCGTGGGAGTGGATTTTGCTCTGAAGGTTCTCCAGTGGTCCGACTCAGAAATGG
TGCGGCTCCAGCTGTGGGATATTGCAGGGCAGGAGCGTTTCACATCCATGACACGACTCTACTA
CCGAGATGCTTCTGCCTGTGTCATCATGTTTGACGTCACCAATGCCACTACTTTCAGCAACAGC
CAACGATGGAAACAGGATCTGGATAGCAAGCTCACACTGCCCAGTGGGGAGCCAGTGCCCTGCT
TGCTCTTGGCCAACAAGAGTGATCTGTCCCCTTGGGCAGTGAGCCGGGACCAGATTGACCGGTT
CAGCAAAGAGAACGGTTTTACGGGCTGGACAGAAACATCAGTCAAGGAGAACAAAAATATCAAT
GAGGCCATGAGAGTCCTCGTGGAAAAGATGATGAACAATTCCAGAGAAGATATAATGTCTTCGT
CCACCCAAGGGAACTACATCAATCTCCAGACCAAACCCTCCCCAGGCTGGACATGCTGCTAGCT
CGCCTTCCTCTCCAGGTCTCTCAGCCGTTCCATCTCCTCCTGTTGGCTGCTCACCTGGCCTAAA
AATTCTGTTGAAAGTATTTGACCTGTCTCTTGCCAACTGCCTAGAAAGGAACACCACTGTGACT
TGGGAATGGCTGCCTGGAACCCAGATGCATTTGTTGTTCCCCGATGTTGTCTGTGACTTGCTGA
CAGCCCGTGTACTCTAGTCAGTGTTTCCTGTGTGACAATGATCACCTCATTCTTCCACTGTCAG
ATGAGTTTCTGGGAAGGAATAAAAATTAGCACTTG

hide sequence

RefSeq Acc Id:

XM_006249744 ⟹ XP_006249806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,859,930 - 45,865,468 (+)	NCBI
mRatBN7.2	13	43,307,757 - 43,313,420 (+)	NCBI
Rnor_6.0	13	48,644,577 - 48,650,229 (+)	NCBI
Rnor_5.0	13	53,717,859 - 53,723,127 (+)	NCBI

Sequence:

show sequence

GAGCAGCGGGGCTCACAAGCTTTTGACGGAAGATGAGAAGTGCGCCGCCCGTGGCAGCACAGGT
ACCGGATAAGGACTCTGCACACCCCCAATTTTGTGTATGTGGTCGGAGGAAGGGCCCAGGTCCT
CTGTACCTCTCCAAGCAAGGTGCTGGCCACGGTTCAACTCTGGCGAGCTGCTCGGAAGTCCCTG
ACAAGAAGTTAGAGAAGCTTCAACCAACCGAGGGTGGGGATGTCTGACTTCAACTGGAAGAGAA
CCCGGGAGCCAAAGGGGTTAAAATAAGCGAATTACCGGGAAAACAAACAAAAAACTCCCCACCA
CTAGCCATGGGCAGCCGAGATCACCTGTTTAAAGTGCTGGTGGTGGGGGACGCCGCGGTGGGTA
AGACGTCACTGGTCCAGCGCTACTCCCAGGACAGCTTCAGCAAGCACTACAAGTCTACCGTGGG
AGTGGATTTTGCTCTGAAGGTTCTCCAGTGGTCCGACTCAGAAATGGTGCGGCTCCAGCTGTGG
GATATTGCAGGGCAGGAGCGTTTCACATCCATGACACGACTCTACTACCGAGATGCTTCTGCCT
GTGTCATCATGTTTGACGTCACCAATGCCACTACTTTCAGCAACAGCCAACGATGGAAACAGGA
TCTGGATAGCAAGCTCACACTGCCCAGTGGGGAGCCAGTGCCCTGCTTGCTCTTGGCCAACAAG
AGTGATCTGTCCCCTTGGGCAGTGAGCCGGGACCAGATTGACCGGTTCAGCAAAGAGAACGGTT
TTACAGGCTGGACAGAAACATCAGTCAAGGAGAACAAAAATATCAATGAGGCCATGAGAGTCCT
CGTGGAAAAGATGATGAACAATTCCAGAGAAGATATAATGTCTTCGTCCACCCAAGGGAACTAC
ATCAATCTCCAGACCAAACCCTCCCCAGGCTGGACATGCTGCTAGCTCGCCTTCCTCTCCAGGT
CTCTCAGCCGTTCCATCTCCTCCTGTTGGCTGCTCACCTGGCCTAAAAATTCTGTTGAAAGTAT
TTGACCTGTCTCTTGCCAACTGCCTAGAAAGGAACACCACTGTGACTTGGGAATGGCTGCCTGG
AACCCAGATGCATTTGTTGTTCCCCGATGTTGTCTGTGACTTGCTGACAGCCCGTGTACTCTAG
TCAGTGTTTCCTGTGTGACAATGATCACCTCATTCTTCCACTGTCAGATGAGTTTCTGGGAAGG
AATAAAAATTAGCACTTGTGCACTGTGTTTGGTGATGCCGGGGATTAGACTCAGAGCCTTGTTC
TCTCTAGGTAAGCACCCACCCCACGTCACACCATGCATGTGACGTACAAGCATACAAAGTAAAT
AAGTAAATATAAAAAGTAGAAATAAAATTATTATAAAGAGA

hide sequence

RefSeq Acc Id:

XM_006249745 ⟹ XP_006249807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,859,933 - 45,865,468 (+)	NCBI
mRatBN7.2	13	43,307,793 - 43,313,420 (+)	NCBI
Rnor_6.0	13	48,644,575 - 48,650,229 (+)	NCBI
Rnor_5.0	13	53,717,859 - 53,723,127 (+)	NCBI

Sequence:

show sequence

CAGAGCAGCGGGGCTCACAAGCTTTTGACGGAAGATGAGAAGTGCGCCGCCCGTGGCAGCACAG
TTAGAGAAGCTTCAACCAACCGAGGGTGGGGATGTCTGACTTCAACTGGAAGAGAACCCGGGAG
CCAAAGGGGTTAAAATAAGCGAATTACCGGGAAAACAAACAAAAAACTCCCCACCACTAGCCAT
GGGCAGCCGAGATCACCTGTTTAAAGTGCTGGTGGTGGGGGACGCCGCGGTGGGTAAGACGTCA
CTGGTCCAGCGCTACTCCCAGGACAGCTTCAGCAAGCACTACAAGTCTACCGTGGGAGTGGATT
TTGCTCTGAAGGTTCTCCAGTGGTCCGACTCAGAAATGGTGCGGCTCCAGCTGTGGGATATTGC
AGGGCAGGAGCGTTTCACATCCATGACACGACTCTACTACCGAGATGCTTCTGCCTGTGTCATC
ATGTTTGACGTCACCAATGCCACTACTTTCAGCAACAGCCAACGATGGAAACAGGATCTGGATA
GCAAGCTCACACTGCCCAGTGGGGAGCCAGTGCCCTGCTTGCTCTTGGCCAACAAGAGTGATCT
GTCCCCTTGGGCAGTGAGCCGGGACCAGATTGACCGGTTCAGCAAAGAGAACGGTTTTACAGGC
TGGACAGAAACATCAGTCAAGGAGAACAAAAATATCAATGAGGCCATGAGAGTCCTCGTGGAAA
AGATGATGAACAATTCCAGAGAAGATATAATGTCTTCGTCCACCCAAGGGAACTACATCAATCT
CCAGACCAAACCCTCCCCAGGCTGGACATGCTGCTAGCTCGCCTTCCTCTCCAGGTCTCTCAGC
CGTTCCATCTCCTCCTGTTGGCTGCTCACCTGGCCTAAAAATTCTGTTGAAAGTATTTGACCTG
TCTCTTGCCAACTGCCTAGAAAGGAACACCACTGTGACTTGGGAATGGCTGCCTGGAACCCAGA
TGCATTTGTTGTTCCCCGATGTTGTCTGTGACTTGCTGACAGCCCGTGTACTCTAGTCAGTGTT
TCCTGTGTGACAATGATCACCTCATTCTTCCACTGTCAGATGAGTTTCTGGGAAGGAATAAAAA
TTAGCACTTGTGCACTGTGTTTGGTGATGCCGGGGATTAGACTCAGAGCCTTGTTCTCTCTAGG
TAAGCACCCACCCCACGTCACACCATGCATGTGACGTACAAGCATACAAAGTAAATAAGTAAAT
ATAAAAAGTAGAAATAAAATTATTATAAAGAGA

hide sequence

RefSeq Acc Id:

XM_008769422 ⟹ XP_008767644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,860,436 - 45,865,468 (+)	NCBI
mRatBN7.2	13	43,308,236 - 43,313,420 (+)	NCBI
Rnor_6.0	13	48,647,414 - 48,650,229 (+)	NCBI

Sequence:

show sequence

TGGATTTTGCTCTGAAGGTTCTCCAGTGGTCCGACTCAGAAATGGTGCGGCTCCAGCTGTGGGA
TATTGCAGGAGCGTTTCACATCCATGACACGACTCTACTACCGAGATGCTTCTGCCTGTGTCAT
CATGTTTGACGTCACCAATGCCACTACTTTCAGCAACAGCCAACGATGGAAACAGGATCTGGAT
AGCAAGCTCACACTGCCCAGTGGGGAGCCAGTGCCCTGCTTGCTCTTGGCCAACAAGAGTGATC
TGTCCCCTTGGGCAGTGAGCCGGGACCAGATTGACCGGTTCAGCAAAGAGAACGGTTTTACAGG
CTGGACAGAAACATCAGTCAAGGAGAACAAAAATATCAATGAGGCCATGAGAGTCCTCGTGGAA
AAGATGATGAACAATTCCAGAGAAGATATAATGTCTTCGTCCACCCAAGGGAACTACATCAATC
TCCAGACCAAACCCTCCCCAGGCTGGACATGCTGCTAGCTCGCCTTCCTCTCCAGGTCTCTCAG
CCGTTCCATCTCCTCCTGTTGGCTGCTCACCTGGCCTAAAAATTCTGTTGAAAGTATTTGACCT
GTCTCTTGCCAACTGCCTAGAAAGGAACACCACTGTGACTTGGGAATGGCTGCCTGGAACCCAG
ATGCATTTGTTGTTCCCCGATGTTGTCTGTGACTTGCTGACAGCCCGTGTACTCTAGTCAGTGT
TTCCTGTGTGACAATGATCACCTCATTCTTCCACTGTCAGATGAGTTTCTGGGAAGGAATAAAA
ATTAGCACTTGTGCACTGTGTTTGGTGATGCCGGGGATTAGACTCAGAGCCTTGTTCTCTCTAG
GTAAGCACCCACCCCACGTCACACCATGCATGTGACGTACAAGCATACAAAGTAAATAAGTAAA
TATAAAAAGTAGAAATAAAATTATTATAAAGAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_598274	(Get FASTA)	NCBI Sequence Viewer
	XP_006249806	(Get FASTA)	NCBI Sequence Viewer
	XP_006249807	(Get FASTA)	NCBI Sequence Viewer
	XP_008767644	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81732	(Get FASTA)	NCBI Sequence Viewer
	CAA65444	(Get FASTA)	NCBI Sequence Viewer
	EDM09812	(Get FASTA)	NCBI Sequence Viewer
	EDM09813	(Get FASTA)	NCBI Sequence Viewer
	EDM09814	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067600
	ENSRNOP00000067600.1
GenBank Protein	Q63481	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_598274 ⟸ NM_133590

- UniProtKB:

Q63481 (UniProtKB/Swiss-Prot), A6IC34 (UniProtKB/TrEMBL), Q66HQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDI
AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSD
LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSSTQGNYIN
LQTKPSPGWTCC

hide sequence

RefSeq Acc Id:	XP_006249806 ⟸ XM_006249744
- Peptide Label:	isoform X1
- UniProtKB:	Q63481 (UniProtKB/Swiss-Prot), A6IC34 (UniProtKB/TrEMBL), Q66HQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDI AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSD LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSSTQGNYIN LQTKPSPGWTCC hide sequence

RefSeq Acc Id:	XP_006249807 ⟸ XM_006249745
- Peptide Label:	isoform X1
- UniProtKB:	Q63481 (UniProtKB/Swiss-Prot), A6IC34 (UniProtKB/TrEMBL), Q66HQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDI AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSD LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSSTQGNYIN LQTKPSPGWTCC hide sequence

RefSeq Acc Id:	XP_008767644 ⟸ XM_008769422
- Peptide Label:	isoform X2
- Sequence:	show sequence MTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSPWAVSR DQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSSTQGNYINLQTKPSPG WTCC hide sequence

Ensembl Acc Id:

ENSRNOP00000067600 ⟸ ENSRNOT00000073669

Ensembl Acc Id:

ENSRNOP00000069623 ⟸ ENSRNOT00000084259

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63481-F1-model_v2	AlphaFold	Q63481	1-204	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698806

Promoter ID:

EPDNEW_R9326

Type:

initiation region

Name:

Rab29_1

Description:

RAB29, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9327

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,644,611 - 48,644,671	EPDNEW

RGD ID:

13698802

Promoter ID:

EPDNEW_R9327

Type:

multiple initiation site

Name:

Rab29_2

Description:

RAB29, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9326

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,644,887 - 48,644,947	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620892	AgrOrtholog
BioCyc Gene	G2FUF-18336	BioCyc
Ensembl Genes	ENSRNOG00000049641	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000073669	ENTREZGENE
	ENSRNOT00000073669.2	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109012	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot
	Rab29/Rab38/Rab32	UniProtKB/Swiss-Prot
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot
	Small_GTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:171122	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93212	IMAGE-MGC_LOAD
NCBI Gene	171122	ENTREZGENE
PANTHER	RAB FAMILY	UniProtKB/Swiss-Prot
	RAS-RELATED PROTEIN RAB-7L1-LIKE ISOFORM X1	UniProtKB/Swiss-Prot
Pfam	Ras	UniProtKB/Swiss-Prot
PhenoGen	Rab29	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/Swiss-Prot
PROSITE	RAB	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000049641	RatGTEx
SMART	RAB	UniProtKB/Swiss-Prot
	RAN	UniProtKB/Swiss-Prot
	RAS	UniProtKB/Swiss-Prot
	RHO	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A6IC34	ENTREZGENE, UniProtKB/TrEMBL
	Q63481	ENTREZGENE
	Q66HQ8	ENTREZGENE, UniProtKB/TrEMBL
	RAB7L_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-05-07	Rab29	RAB29, member RAS oncogene family	Rab7l1	RAB7, member RAS oncogene family-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Rab7l1	RAB7, member RAS oncogene family-like 1		Ras-related GTP-binding protein Rab29	Name updated	1299863	APPROVED
2004-09-10	Rab7l1	Ras-related GTP-binding protein Rab29	Rab29		Symbol and Name updated	1299863	APPROVED
2002-08-07	Rab29	Ras-related GTP-binding protein Rab29			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	lacks detectable GTPase activity	633763

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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