Phldb1 (pleckstrin homology-like domain, family B, member 1) - Rat Genome Database

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Gene: Phldb1 (pleckstrin homology-like domain, family B, member 1) Rattus norvegicus
Analyze
Symbol: Phldb1
Name: pleckstrin homology-like domain, family B, member 1
RGD ID: 620878
Description: Predicted to be involved in regulation of embryonic development; regulation of epithelial to mesenchymal transition; and regulation of microtubule cytoskeleton organization. Predicted to be located in several cellular components, including cytosol; intercellular bridge; and plasma membrane. Predicted to be active in basal cortex. Human ortholog(s) of this gene implicated in osteogenesis imperfecta. Orthologous to human PHLDB1 (pleckstrin homology like domain family B member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ll5; pleckstrin homology-like domain family B member 1; protein LL5-alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,900,338 - 53,948,325 (-)NCBIGRCr8
mRatBN7.2845,003,543 - 45,051,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,498,524 - 50,546,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,777,244 - 48,825,173 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,647,857 - 46,695,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,997,189 - 49,045,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,997,184 - 49,045,154 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,615,937 - 47,666,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,645,164 - 47,686,143 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,653,935 - 47,682,657 (-)NCBI
Celera844,588,473 - 44,629,442 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlormequat chloride  (EXP)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
coumarin  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
levetiracetam  (EXP)
methamphetamine  (ISO)
methapyrilene  (ISO)
morphine  (ISO)
Muraglitazar  (EXP)
nickel atom  (ISO)
nicotine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
tamoxifen  (ISO)
Tesaglitazar  (EXP)
thioacetamide  (EXP)
triptonide  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
zebularine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning of LL5, a novel protein encoding cDNA from a rat pituitary library. Levi L, etal., Biochim Biophys Acta 1993 Nov 16;1216(2):342-4.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23940118  


Genomics

Comparative Map Data
Phldb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,900,338 - 53,948,325 (-)NCBIGRCr8
mRatBN7.2845,003,543 - 45,051,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,498,524 - 50,546,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,777,244 - 48,825,173 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,647,857 - 46,695,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,997,189 - 49,045,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,997,184 - 49,045,154 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,615,937 - 47,666,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,645,164 - 47,686,143 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,653,935 - 47,682,657 (-)NCBI
Celera844,588,473 - 44,629,442 (-)NCBICelera
Cytogenetic Map8q22NCBI
PHLDB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,606,436 - 118,658,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,606,440 - 118,658,031 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,477,151 - 118,528,738 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,982,423 - 118,033,951 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,982,422 - 118,033,951NCBI
Celera11115,637,985 - 115,689,504 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,414,710 - 114,466,582 (+)NCBIHuRef
CHM1_111118,363,870 - 118,415,396 (+)NCBICHM1_1
T2T-CHM13v2.011118,625,712 - 118,677,249 (+)NCBIT2T-CHM13v2.0
Phldb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,597,605 - 44,649,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,597,601 - 44,646,495 (-)EnsemblGRCm39 Ensembl
GRCm38944,686,308 - 44,735,248 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,686,304 - 44,735,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,494,391 - 44,543,277 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,437,303 - 44,486,189 (-)NCBIMGSCv36mm8
Celera941,950,682 - 41,999,929 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Phldb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,756,379 - 19,800,984 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,754,997 - 19,800,984 (+)NCBIChiLan1.0ChiLan1.0
PHLDB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,312,878 - 119,363,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,417,865 - 120,468,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,446,275 - 113,496,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,376,205 - 117,426,391 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,376,205 - 117,426,391 (+)Ensemblpanpan1.1panPan2
PHLDB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,090,823 - 15,138,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,090,813 - 15,134,784 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,143,223 - 15,189,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,034,008 - 15,080,652 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,034,001 - 15,080,594 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,172,407 - 15,219,091 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,075,943 - 15,122,594 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,116,373 - 15,159,865 (-)NCBIUU_Cfam_GSD_1.0
Phldb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,718,559 - 100,766,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,639,982 - 3,688,450 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,639,992 - 3,688,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHLDB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,902,155 - 45,949,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,902,099 - 45,949,415 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,924,779 - 50,943,422 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHLDB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,001,516 - 110,053,166 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,002,591 - 110,052,831 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,982,569 - 16,034,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phldb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,016,587 - 14,065,905 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,016,774 - 14,064,069 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phldb1
141 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:127
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000047303
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)84269268450095447Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat

Markers in Region
AU041016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,003,641 - 45,003,805 (+)MAPPERmRatBN7.2
Rnor_6.0848,997,293 - 48,997,456NCBIRnor6.0
Rnor_5.0847,616,041 - 47,616,204UniSTSRnor5.0
RGSC_v3.4847,645,268 - 47,645,431UniSTSRGSC3.4
Celera844,588,577 - 44,588,740UniSTS
Cytogenetic Map8q22UniSTS
BI278154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,003,725 - 45,003,925 (+)MAPPERmRatBN7.2
Rnor_6.0848,997,377 - 48,997,576NCBIRnor6.0
Rnor_5.0847,616,125 - 47,616,324UniSTSRnor5.0
RGSC_v3.4847,645,352 - 47,645,551UniSTSRGSC3.4
Celera844,588,661 - 44,588,860UniSTS
RH 3.4 Map8439.5UniSTS
Cytogenetic Map8q22UniSTS
BE106591  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,023,867 - 45,024,020 (+)MAPPERmRatBN7.2
Rnor_6.0849,017,515 - 49,017,667NCBIRnor6.0
Rnor_5.0847,636,263 - 47,636,415UniSTSRnor5.0
RGSC_v3.4847,665,490 - 47,665,642UniSTSRGSC3.4
Celera844,608,787 - 44,608,939UniSTS
RH 3.4 Map8442.8UniSTS
Cytogenetic Map8q22UniSTS
AU047896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,035,610 - 45,035,780 (+)MAPPERmRatBN7.2
Rnor_6.0849,029,258 - 49,029,427NCBIRnor6.0
Rnor_5.0847,648,006 - 47,648,175UniSTSRnor5.0
RGSC_v3.4847,677,232 - 47,677,401UniSTSRGSC3.4
Celera844,620,530 - 44,620,699UniSTS
Cytogenetic Map8q22UniSTS
AU047883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,035,619 - 45,035,865 (+)MAPPERmRatBN7.2
Rnor_6.0849,029,267 - 49,029,512NCBIRnor6.0
Rnor_5.0847,648,015 - 47,648,260UniSTSRnor5.0
RGSC_v3.4847,677,241 - 47,677,486UniSTSRGSC3.4
Celera844,620,539 - 44,620,784UniSTS
Cytogenetic Map8q22UniSTS
RH140559  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2845,008,573 - 45,008,882 (+)MAPPERmRatBN7.2
Rnor_6.0849,002,225 - 49,002,533NCBIRnor6.0
Rnor_5.0847,620,973 - 47,621,281UniSTSRnor5.0
RGSC_v3.4847,650,200 - 47,650,508UniSTSRGSC3.4
Celera844,593,509 - 44,593,817UniSTS
RH 3.4 Map8441.5UniSTS
Cytogenetic Map8q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 7 4 11 4 6 9 74 35 34 11 6
Low 50 37 8 37 2 2 7 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X74226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000047303   ⟹   ENSRNOP00000046235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)Ensembl
Rnor_6.0 Ensembl848,997,189 - 49,038,169 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078816   ⟹   ENSRNOP00000068824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,544 - 45,032,270 (-)Ensembl
Rnor_6.0 Ensembl848,997,195 - 49,025,917 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088034   ⟹   ENSRNOP00000069330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)Ensembl
Rnor_6.0 Ensembl848,997,184 - 49,045,154 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096683   ⟹   ENSRNOP00000096080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,544 - 45,038,031 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100408   ⟹   ENSRNOP00000091125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103833   ⟹   ENSRNOP00000094780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,544 - 45,051,522 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114831   ⟹   ENSRNOP00000087775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,003,538 - 45,051,522 (-)Ensembl
RefSeq Acc Id: NM_001191578   ⟹   NP_001178507
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,285 (-)NCBI
mRatBN7.2845,003,543 - 45,051,501 (-)NCBI
Rnor_6.0848,997,189 - 49,038,169 (-)NCBI
Rnor_5.0847,615,937 - 47,666,166 (-)NCBI
Celera844,588,473 - 44,629,442 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001400943   ⟹   NP_001387872
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,285 (-)NCBI
mRatBN7.2845,003,543 - 45,051,501 (-)NCBI
RefSeq Acc Id: XM_039080760   ⟹   XP_038936688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,325 (-)NCBI
mRatBN7.2845,003,543 - 45,044,545 (-)NCBI
RefSeq Acc Id: XM_039080762   ⟹   XP_038936690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
mRatBN7.2845,003,543 - 45,044,545 (-)NCBI
RefSeq Acc Id: XM_039080764   ⟹   XP_038936692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
mRatBN7.2845,003,543 - 45,044,545 (-)NCBI
RefSeq Acc Id: XM_039080773   ⟹   XP_038936701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
mRatBN7.2845,003,543 - 45,044,545 (-)NCBI
RefSeq Acc Id: XM_063264839   ⟹   XP_063120909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264840   ⟹   XP_063120910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264841   ⟹   XP_063120911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264842   ⟹   XP_063120912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264843   ⟹   XP_063120913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264844   ⟹   XP_063120914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264845   ⟹   XP_063120915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264846   ⟹   XP_063120916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264847   ⟹   XP_063120917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264848   ⟹   XP_063120918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264849   ⟹   XP_063120919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264850   ⟹   XP_063120920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264851   ⟹   XP_063120921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264852   ⟹   XP_063120922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264853   ⟹   XP_063120923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264854   ⟹   XP_063120924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264855   ⟹   XP_063120925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264856   ⟹   XP_063120926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,934,824 (-)NCBI
RefSeq Acc Id: XM_063264857   ⟹   XP_063120927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,934,824 (-)NCBI
RefSeq Acc Id: XM_063264858   ⟹   XP_063120928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264859   ⟹   XP_063120929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264860   ⟹   XP_063120930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264861   ⟹   XP_063120931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264862   ⟹   XP_063120932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264863   ⟹   XP_063120933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264864   ⟹   XP_063120934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264865   ⟹   XP_063120935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264866   ⟹   XP_063120936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264867   ⟹   XP_063120937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264868   ⟹   XP_063120938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264869   ⟹   XP_063120939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264870   ⟹   XP_063120940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264871   ⟹   XP_063120941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,934,820 (-)NCBI
RefSeq Acc Id: XM_063264872   ⟹   XP_063120942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264873   ⟹   XP_063120943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264874   ⟹   XP_063120944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264875   ⟹   XP_063120945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264876   ⟹   XP_063120946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,941,334 (-)NCBI
RefSeq Acc Id: XM_063264877   ⟹   XP_063120947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,325 (-)NCBI
RefSeq Acc Id: XM_063264878   ⟹   XP_063120948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,325 (-)NCBI
RefSeq Acc Id: XM_063264879   ⟹   XP_063120949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,325 (-)NCBI
RefSeq Acc Id: XM_063264880   ⟹   XP_063120950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,948,168 (-)NCBI
RefSeq Acc Id: XM_063264881   ⟹   XP_063120951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,934,817 (-)NCBI
RefSeq Acc Id: XM_063264882   ⟹   XP_063120952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,900,338 - 53,934,815 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001178507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936688 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936690 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936692 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936701 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120909 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120910 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120911 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120912 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120913 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120914 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120915 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120916 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120917 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120918 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120919 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120920 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120921 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120922 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120923 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120924 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120925 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120926 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120927 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120928 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120929 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120930 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120931 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120932 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120933 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120934 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120935 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120936 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120937 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120938 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120939 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120940 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120941 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120942 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120943 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120944 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120945 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120946 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120947 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120948 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120949 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120950 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120952 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI04705 (Get FASTA)   NCBI Sequence Viewer  
  CAA52297 (Get FASTA)   NCBI Sequence Viewer  
  EDL95331 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000046235
  ENSRNOP00000046235.3
  ENSRNOP00000068824.2
  ENSRNOP00000069330.1
  ENSRNOP00000087775.1
  ENSRNOP00000091125.1
  ENSRNOP00000094780
  ENSRNOP00000094780.1
  ENSRNOP00000096080.1
GenBank Protein Q63312 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001178507   ⟸   NM_001191578
- Peptide Label: isoform 1
- UniProtKB: D3ZNS1 (UniProtKB/TrEMBL),   A0A8I6A9F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000046235   ⟸   ENSRNOT00000047303
RefSeq Acc Id: ENSRNOP00000068824   ⟸   ENSRNOT00000078816
RefSeq Acc Id: ENSRNOP00000069330   ⟸   ENSRNOT00000088034
RefSeq Acc Id: XP_038936701   ⟸   XM_039080773
- Peptide Label: isoform X37
- UniProtKB: A0A0G2JV32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936692   ⟸   XM_039080764
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A9F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936690   ⟸   XM_039080762
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A9F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936688   ⟸   XM_039080760
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A9F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091125   ⟸   ENSRNOT00000100408
RefSeq Acc Id: ENSRNOP00000087775   ⟸   ENSRNOT00000114831
RefSeq Acc Id: ENSRNOP00000094780   ⟸   ENSRNOT00000103833
RefSeq Acc Id: ENSRNOP00000096080   ⟸   ENSRNOT00000096683
RefSeq Acc Id: NP_001387872   ⟸   NM_001400943
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AMV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120949   ⟸   XM_063264879
- Peptide Label: isoform X44
RefSeq Acc Id: XP_063120948   ⟸   XM_063264878
- Peptide Label: isoform X43
RefSeq Acc Id: XP_063120947   ⟸   XM_063264877
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063120950   ⟸   XM_063264880
- Peptide Label: isoform X44
RefSeq Acc Id: XP_063120946   ⟸   XM_063264876
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063120945   ⟸   XM_063264875
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063120942   ⟸   XM_063264872
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063120938   ⟸   XM_063264868
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063120940   ⟸   XM_063264870
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063120933   ⟸   XM_063264863
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063120930   ⟸   XM_063264860
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063120929   ⟸   XM_063264859
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063120924   ⟸   XM_063264854
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063120934   ⟸   XM_063264864
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063120932   ⟸   XM_063264862
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063120931   ⟸   XM_063264861
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063120928   ⟸   XM_063264858
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063120922   ⟸   XM_063264852
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063120920   ⟸   XM_063264850
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063120919   ⟸   XM_063264849
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063120917   ⟸   XM_063264847
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063120915   ⟸   XM_063264845
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063120914   ⟸   XM_063264844
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063120944   ⟸   XM_063264874
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063120943   ⟸   XM_063264873
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063120939   ⟸   XM_063264869
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063120937   ⟸   XM_063264867
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063120936   ⟸   XM_063264866
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063120935   ⟸   XM_063264865
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063120925   ⟸   XM_063264855
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063120921   ⟸   XM_063264851
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063120916   ⟸   XM_063264846
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063120923   ⟸   XM_063264853
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063120918   ⟸   XM_063264848
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063120912   ⟸   XM_063264842
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063120913   ⟸   XM_063264843
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063120911   ⟸   XM_063264841
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063120910   ⟸   XM_063264840
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063120909   ⟸   XM_063264839
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120926   ⟸   XM_063264856
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063120927   ⟸   XM_063264857
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063120941   ⟸   XM_063264871
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063120951   ⟸   XM_063264881
- Peptide Label: isoform X45
RefSeq Acc Id: XP_063120952   ⟸   XM_063264882
- Peptide Label: isoform X46
- UniProtKB: A6J408 (UniProtKB/TrEMBL)
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63312-F1-model_v2 AlphaFold Q63312 1-831 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695911
Promoter ID:EPDNEW_R6424
Type:initiation region
Name:Phldb1_1
Description:pleckstrin homology-like domain, family B, member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0849,045,141 - 49,045,201EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620878 AgrOrtholog
BioCyc Gene G2FUF-30706 BioCyc
Ensembl Genes ENSRNOG00000026985 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047303 ENTREZGENE
  ENSRNOT00000047303.5 UniProtKB/TrEMBL
  ENSRNOT00000078816.2 UniProtKB/TrEMBL
  ENSRNOT00000088034.2 UniProtKB/TrEMBL
  ENSRNOT00000096683.1 UniProtKB/TrEMBL
  ENSRNOT00000100408.1 UniProtKB/TrEMBL
  ENSRNOT00000103833 ENTREZGENE
  ENSRNOT00000103833.1 UniProtKB/TrEMBL
  ENSRNOT00000114831.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHLDB1/2/3_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
KEGG Report rno:171434 UniProtKB/TrEMBL
NCBI Gene 171434 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY-LIKE DOMAIN FAMILY B MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phldb1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026985 RatGTEx
SMART SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA UniProtKB/TrEMBL
UniProt A0A0G2JTS5_RAT UniProtKB/TrEMBL
  A0A0G2JV32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJD6_RAT UniProtKB/TrEMBL
  A0A8I6GLX2_RAT UniProtKB/TrEMBL
  A6J408 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNS1 ENTREZGENE, UniProtKB/TrEMBL
  PHLB1_RAT UniProtKB/Swiss-Prot
  Q3SWT3_RAT UniProtKB/TrEMBL
  Q63312 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Phldb1  pleckstrin homology-like domain, family B, member 1  Ll5  LL5 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Ll5  LL5 protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript 2.3 kb transcript is detected in pituitary 633318