Fxyd3 (FXYD domain-containing ion transport regulator 3) - Rat Genome Database

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Gene: Fxyd3 (FXYD domain-containing ion transport regulator 3) Rattus norvegicus
Analyze
Symbol: Fxyd3
Name: FXYD domain-containing ion transport regulator 3
RGD ID: 620825
Description: Predicted to enable ATPase binding activity and sodium channel regulator activity. Predicted to be involved in positive regulation of sodium ion export across plasma membrane. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human FXYD3 (FXYD domain containing ion transport regulator 3); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MAT8; sodium/potassium-transporting ATPase subunit FXYD3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,432,918 - 95,440,129 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,432,919 - 95,439,702 (-)EnsemblGRCr8
mRatBN7.2186,305,531 - 86,312,455 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx191,725,977 - 91,732,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,192,123 - 100,198,914 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,484,253 - 93,491,042 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd194,048,875 - 94,055,657 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive199,193,185 - 99,199,923 (-)NCBILyon_Normotensive
Lyon_Hypertensive195,726,493 - 95,733,231 (-)NCBILyon_Hypertensive
F344_StmMcwi194,179,290 - 94,186,057 (-)NCBIF344_StmMcwi
Rnor_6.0189,502,561 - 89,510,146 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,502,562 - 89,509,343 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,656,769 - 90,664,514 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4186,113,706 - 86,120,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,674,540 - 80,681,283 (-)NCBICelera
RGSC_v3.1186,191,817 - 86,195,198 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphotericin B  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
camptothecin  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
Cuprizon  (EXP)
dextran sulfate  (ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (EXP,ISO)
diuron  (EXP)
folic acid  (ISO)
furan  (EXP)
gemcitabine  (ISO)
genistein  (ISO)
gentamycin  (EXP)
ICI D1694  (ISO)
indole-3-methanol  (EXP)
irinotecan  (ISO)
L-methionine  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
poly(I:C)  (EXP)
progesterone  (ISO)
rotenone  (EXP)
S-nitrosoglutathione  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, etal., Genome Res 1996 Sep;6(9):791-806.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The FXYD gene family of small ion transport regulators or channels: cDNA sequence, protein signature sequence, and expression. Sweadner KJ and Rael E, Genomics 2000 Aug 15;68(1):41-56.
Additional References at PubMed
PMID:15743908   PMID:19199708  


Genomics

Comparative Map Data
Fxyd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,432,918 - 95,440,129 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,432,919 - 95,439,702 (-)EnsemblGRCr8
mRatBN7.2186,305,531 - 86,312,455 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx191,725,977 - 91,732,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,192,123 - 100,198,914 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,484,253 - 93,491,042 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd194,048,875 - 94,055,657 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive199,193,185 - 99,199,923 (-)NCBILyon_Normotensive
Lyon_Hypertensive195,726,493 - 95,733,231 (-)NCBILyon_Hypertensive
F344_StmMcwi194,179,290 - 94,186,057 (-)NCBIF344_StmMcwi
Rnor_6.0189,502,561 - 89,510,146 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,502,562 - 89,509,343 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,656,769 - 90,664,514 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4186,113,706 - 86,120,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,674,540 - 80,681,283 (-)NCBICelera
RGSC_v3.1186,191,817 - 86,195,198 (-)NCBI
Cytogenetic Map1q21NCBI
FXYD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,115,823 - 35,124,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,115,521 - 35,125,653 (+)Ensemblhg38GRCh38
GRCh371935,606,727 - 35,615,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,298,639 - 40,307,067 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341940,298,638 - 40,307,067NCBI
Celera1932,320,104 - 32,328,664 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,114,660 - 32,123,221 (+)NCBIHuRef
CHM1_11935,608,738 - 35,617,241 (+)NCBICHM1_1
T2T-CHM13v2.01937,660,439 - 37,669,003 (+)NCBIT2T-CHM13v2.0
Fxyd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,769,960 - 30,776,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,767,597 - 30,776,129 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38731,070,535 - 31,076,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl731,068,172 - 31,076,704 (-)Ensemblmm10GRCm38
MGSCv37731,855,554 - 31,861,716 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36730,779,297 - 30,785,432 (-)NCBIMGSCv36mm8
Celera725,637,243 - 25,643,391 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.29NCBI
Fxyd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,436,334 - 4,444,315 (+)Ensembl
ChiLan1.0NW_0049554684,437,280 - 4,444,315 (+)NCBIChiLan1.0ChiLan1.0
FXYD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,103,312 - 41,135,936 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,086,656 - 43,119,266 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,036,936 - 32,070,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,775,323 - 40,808,664 (+)NCBIPanPan1.1PanPan1.1panPan2
FXYD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,452,952 - 117,459,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,453,272 - 117,456,193 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1116,853,609 - 116,860,236 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01118,050,547 - 118,057,103 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,050,867 - 118,053,788 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,613,152 - 117,619,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,238,490 - 117,245,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,294,967 - 118,301,602 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fxyd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,507,840 - 10,513,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,132,150 - 1,138,146 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,132,185 - 1,137,676 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FXYD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,647,466 - 44,654,374 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1644,647,771 - 44,654,377 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,111,472 - 40,118,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FXYD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,047,352 - 30,057,059 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,052,066 - 30,056,026 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660737,822,361 - 7,830,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fxyd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,385,138 - 8,391,670 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fxyd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12164,953,524 - 164,960,991 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fxyd3
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:121
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000028637
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat

Markers in Region
BE120691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,305,694 - 86,305,887 (+)MAPPERmRatBN7.2
Rnor_6.0189,502,725 - 89,502,917NCBIRnor6.0
Rnor_5.0190,657,815 - 90,658,007UniSTSRnor5.0
RGSC_v3.4186,113,870 - 86,114,062UniSTSRGSC3.4
Celera180,674,704 - 80,674,896UniSTS
RH 3.4 Map1843.6UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 8 66 106 90 89 58 56 58 6 298 150 5 90 70 88 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000028637   ⟹   ENSRNOP00000028637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl189,502,562 - 89,509,343 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172857   ⟹   ENSRNOP00000104598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,432,919 - 95,439,702 (-)Ensembl
RefSeq Acc Id: NM_172317   ⟹   NP_758528
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,439,702 (-)NCBI
mRatBN7.2186,305,531 - 86,312,319 (-)NCBI
Dahl_SR_JrHsd194,048,875 - 94,055,657 (-)NCBI
Lyon_Normotensive199,193,185 - 99,199,923 (-)NCBI
Lyon_Hypertensive195,726,493 - 95,733,231 (-)NCBI
F344_StmMcwi194,179,290 - 94,186,057 (-)NCBI
Rnor_6.0189,502,561 - 89,509,343 (-)NCBI
Rnor_5.0190,656,769 - 90,664,514 (-)NCBI
RGSC_v3.4186,113,706 - 86,120,488 (-)RGD
Celera180,674,540 - 80,681,283 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228819   ⟹   XP_006228881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,440,037 (-)NCBI
mRatBN7.2186,305,531 - 86,312,455 (-)NCBI
Rnor_6.0189,502,561 - 89,510,146 (-)NCBI
Rnor_5.0190,656,769 - 90,664,514 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063266111   ⟹   XP_063122181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,440,129 (-)NCBI
RefSeq Acc Id: XM_063266144   ⟹   XP_063122214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,440,078 (-)NCBI
RefSeq Acc Id: XM_063266166   ⟹   XP_063122236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,440,129 (-)NCBI
RefSeq Acc Id: XM_063266203   ⟹   XP_063122273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,432,918 - 95,440,038 (-)NCBI
RefSeq Acc Id: NP_758528   ⟸   NM_172317
- Peptide Label: precursor
- UniProtKB: P59645 (UniProtKB/Swiss-Prot),   A6JA66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228881   ⟸   XM_006228819
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000028637   ⟸   ENSRNOT00000028637
RefSeq Acc Id: XP_063122236   ⟸   XM_063266166
- Peptide Label: isoform X2
- UniProtKB: P59645 (UniProtKB/Swiss-Prot),   A6JA66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122181   ⟸   XM_063266111
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122214   ⟸   XM_063266144
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122273   ⟸   XM_063266203
- Peptide Label: isoform X2
- UniProtKB: P59645 (UniProtKB/Swiss-Prot),   A6JA66 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104598   ⟸   ENSRNOT00000172857

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59645-F1-model_v2 AlphaFold P59645 1-88 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689944
Promoter ID:EPDNEW_R469
Type:multiple initiation site
Name:Fxyd3_1
Description:FXYD domain-containing ion transport regulator 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,509,370 - 89,509,430EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620825 AgrOrtholog
BioCyc Gene G2FUF-60047 BioCyc
Ensembl Genes ENSRNOG00000021095 Ensembl
  ENSRNOG00000080106 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000172857 ENTREZGENE
Gene3D-CATH Single helix bin UniProtKB/Swiss-Prot
InterPro FXYD_motif UniProtKB/Swiss-Prot
  Ion-transport_regulator_FXYD UniProtKB/Swiss-Prot
KEGG Report rno:116831 UniProtKB/Swiss-Prot
NCBI Gene 116831 ENTREZGENE
PANTHER FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 3 UniProtKB/Swiss-Prot
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA UniProtKB/Swiss-Prot
Pfam ATP1G1_PLM_MAT8 UniProtKB/Swiss-Prot
PhenoGen Fxyd3 PhenoGen
PROSITE FXYD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021095 RatGTEx
  ENSRNOG00000080106 RatGTEx
UniProt A6JA66 ENTREZGENE, UniProtKB/TrEMBL
  A6JA68_RAT UniProtKB/TrEMBL
  FXYD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Fxyd3  FXYD domain-containing ion transport regulator 3      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Fxyd3  FXYD domain-containing ion transport regulator 3      Symbol and Name status set to provisional 70820 PROVISIONAL