Pygl (glycogen phosphorylase L) - Rat Genome Database

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Gene: Pygl (glycogen phosphorylase L) Rattus norvegicus
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Symbol: Pygl
Name: glycogen phosphorylase L
RGD ID: 620687
Description: Enables carbohydrate binding activity; glycogen phosphorylase activity; and identical protein binding activity. Involved in 5-phosphoribose 1-diphosphate biosynthetic process and glycogen catabolic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Used to study glycogen storage disease VI and lactic acidosis. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease VI; and lactic acidosis. Orthologous to human PYGL (glycogen phosphorylase L); PARTICIPATES IN glycogen degradation pathway; glycogen metabolic pathway; congenital sucrase-isomaltase deficiency pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glycogen phosphorylase; glycogen phosphorylase, liver form; liver glycogen phosphorylase; phosphorylase, glycogen, liver
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8694,433,558 - 94,476,219 (-)NCBIGRCr8
mRatBN7.2688,697,598 - 88,740,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,697,593 - 88,740,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,096,834 - 89,133,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0689,396,285 - 89,433,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,835,817 - 88,872,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,597,759 - 92,643,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,597,706 - 92,643,847 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,045,144 - 102,091,119 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4692,298,339 - 92,341,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1692,301,796 - 92,344,803 (-)NCBI
Celera687,191,869 - 87,228,313 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
PyglRatChemical and Drug Induced Liver Injury  IEP 21079733protein:increased expression:serum (rat)RGD 
PyglRatglycogen storage disease  ISOPYGL (Homo sapiens)1599374 RGD 
PyglRatglycogen storage disease VI  IAGP 21079734DNA:SNPs more ...RGD 
PyglRatglycogen storage disease VI  IAGP 11071447DNA:mutation:multipleRGD 
PyglRatHepatomegaly  IAGP 11071447associated with glycogen storage disease VI and DNA:mutation:multipleRGD 
PyglRatHepatomegaly  IAGP 21079734DNA:SNPs more ...RGD 
PyglRatlactic acidosis  IAGP 11071447DNA:mutation:multipleRGD 
Object Symbol
Species
Term
Qualifier
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Original Reference(s)
PyglRatgenetic disease  ISOPYGL (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
PyglRatglycogen storage disease VI  ISOPYGL (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12809646 more ...
Object Symbol
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Original Reference(s)
PyglRatChemical and Drug Induced Liver Injury  ISOPYGL (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25231249
PyglRatglycogen storage disease VI  ISOPYGL (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:9529348 and PMID:9536091
PyglRathepatocellular carcinoma  ISOPYGL (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:2885971
Object Symbol
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Original Reference(s)
PyglRatglycogen storage disease VI  ISSPygl (Mus musculus)13592920OMIM:232700MouseDO 
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Original Reference(s)
PyglRatglycogen storage disease VI  ISOPYGL (Homo sapiens)7240710 OMIM 

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Original Reference(s)
PyglRat(1->4)-beta-D-glucan multiple interactionsISOPygl (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of PYGL mRNACTDPMID:36331819
PyglRat1,1-dichloroethene decreases expressionISOPygl (Mus musculus)6480464vinylidene chloride results in decreased expression of PYGL mRNACTDPMID:26682919
PyglRat1,2-dichloroethane decreases expressionISOPygl (Mus musculus)6480464ethylene dichloride results in decreased expression of PYGL mRNA and ethylene dichloride results in decreased expression of PYGL proteinCTDPMID:28189721 and PMID:28960355
PyglRat1,2-dimethylhydrazine decreases expressionISOPygl (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of PYGL mRNACTDPMID:22206623
PyglRat1-chloro-2,4-dinitrobenzene affects bindingISOPYGL (Homo sapiens)6480464Dinitrochlorobenzene binds to PYGL proteinCTDPMID:32991956
PyglRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of PYGL mRNACTDPMID:17522070
PyglRat17alpha-ethynylestradiol multiple interactionsISOPygl (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PYGL mRNACTDPMID:17942748
PyglRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of PYGL mRNACTDPMID:17557909
PyglRat17beta-estradiol decreases expressionISOPygl (Mus musculus)6480464Estradiol results in decreased expression of PYGL mRNACTDPMID:19484750 and PMID:39298647
PyglRat17beta-estradiol multiple interactionsISOPYGL (Homo sapiens)6480464[Estradiol co-treated with Norethindrone Acetate] results in increased expression of PYGL mRNACTDPMID:22217510
PyglRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of PYGL mRNACTDPMID:26496021
PyglRat1H-pyrazole decreases expressionISOPygl (Mus musculus)6480464pyrazole results in decreased expression of PYGL mRNACTDPMID:17945193
PyglRat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOPygl (Mus musculus)64804642 more ...CTDPMID:31388691
PyglRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPygl (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PYGL mRNACTDPMID:17942748
PyglRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPygl (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PYGL mRNACTDPMID:19770486 and PMID:27562557
PyglRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPYGL (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of PYGL mRNACTDPMID:22903824
PyglRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PYGL mRNACTDPMID:20959002 and PMID:21215274
PyglRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPygl (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PYGL mRNACTDPMID:21570461
PyglRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOPygl (Mus musculus)64804642 more ...CTDPMID:38648751
PyglRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of PYGL mRNACTDPMID:21346803

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Biological Process
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Object Symbol
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Original Reference(s)
PyglRat5-phosphoribose 1-diphosphate biosynthetic process  IMP 1599376 RGD 
PyglRatcarbohydrate metabolic process involved_inIEAInterPro:IPR000811 and InterPro:IPR0118331600115GO_REF:0000002InterProGO_REF:0000002
PyglRatglucose homeostasis involved_inISOPYGL (Homo sapiens)1624291 PMID:17705025RGDPMID:17705025
PyglRatglycogen catabolic process  IDA 2304128 RGD 
PyglRatglycogen catabolic process  IDA 1642805 RGD 
PyglRatglycogen catabolic process involved_inISOPygl (Mus musculus)1624291MGI:4362669 PMID:31701076 and PMID:36077341RGDPMID:31701076 and PMID:36077341
PyglRatglycogen catabolic process involved_inIBACGD:CAL0000189831 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PyglRatglycogen catabolic process involved_inIEAARBA:ARBA000341811600115GO_REF:0000117UniProtGO_REF:0000117
PyglRatglycogen catabolic process  IDA 1642743 RGD 
PyglRatglycogen metabolic process  IDA 2304113 RGD 
PyglRatglycogen metabolic process involved_inIEAUniProtKB-KW:KW-03211600115GO_REF:0000043UniProtGO_REF:0000043
PyglRatglycogen metabolic process involved_inISOPYGL (Homo sapiens)1624291 PMID:10980448 and PMID:17705025RGDPMID:10980448 and PMID:17705025
PyglRatglycogen metabolic process  IDA 2304119 RGD 
PyglRatglycogen metabolic process  IDA 1601233 RGD 
PyglRatglycogen metabolic process  IDA 2304136 RGD 
PyglRatglycogen metabolic process  IDA 2304115 RGD 
PyglRatglycogen metabolic process  IDA 2304117 RGD 
PyglRatnecroptotic process acts_upstream_of_or_withinISOPygl (Mus musculus)1624291MGI:2154952 PMID:19498109RGDPMID:19498109
PyglRatresponse to bacterium acts_upstream_of_or_withinISOPygl (Mus musculus)1624291 PMID:23012479RGDPMID:23012479
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Cellular Component

  
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Original Reference(s)
PyglRatcytoplasm is_active_inIBAFB:FBgn0004507 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PyglRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
PyglRatcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function
1 to 20 of 37 rows

  
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Original Reference(s)
PyglRat1,4-alpha-oligoglucan phosphorylase activity enablesIEAEC:2.4.1.11600115GO_REF:0000003UniProtGO_REF:0000003
PyglRat1,4-alpha-oligoglucan phosphorylase activity enablesIEARHEA:417321600115GO_REF:0000116RHEAGO_REF:0000116
PyglRat1,4-alpha-oligoglucan phosphorylase activity enablesIEAInterPro:IPR0118331600115GO_REF:0000002InterProGO_REF:0000002
PyglRatAMP binding enablesISOPYGL (Homo sapiens)1624291 PMID:10949035 and PMID:10980448RGDPMID:10949035 and PMID:10980448
PyglRatATP binding enablesISOPYGL (Homo sapiens)1624291 PMID:10949035RGDPMID:10949035
PyglRatbile acid binding enablesISOPYGL (Homo sapiens)1624291 PMID:12204691RGDPMID:12204691
PyglRatcarbohydrate binding  IDA 1642743 RGD 
PyglRatcarbohydrate binding  IDA 1642805 RGD 
PyglRatcatalytic activity enablesIEAUniProtKB-KW:KW-00211600115GO_REF:0000043UniProtGO_REF:0000043
PyglRatD-glucose binding enablesISOPYGL (Homo sapiens)1624291 PMID:10980448 and PMID:12204691RGDPMID:10980448 and PMID:12204691
PyglRatglycogen phosphorylase activity  IDA 2304128 RGD 
PyglRatglycogen phosphorylase activity  IDA 1642805 RGD 
PyglRatglycogen phosphorylase activity enablesIEAARBA:ARBA000342061600115GO_REF:0000117UniProtGO_REF:0000117
PyglRatglycogen phosphorylase activity enablesIEAInterPro:IPR0008111600115GO_REF:0000002InterProGO_REF:0000002
PyglRatglycogen phosphorylase activity enablesIBACGD:CAL0000189831 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PyglRatglycogen phosphorylase activity enablesISOPygl (Mus musculus)1624291 PMID:34673295RGDPMID:34673295
PyglRatglycogen phosphorylase activity enablesISOPYGL (Homo sapiens)1624291 PMID:10980448 more ...RGDPMID:10980448 more ...
PyglRatglycogen phosphorylase activity  IDA 2304115 RGD 
PyglRatglycogen phosphorylase activity  IDA 2304113 RGD 
PyglRatglycogen phosphorylase activity  IDA 1642743 RGD 
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RGD Manual Annotations


  

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
PyglRatinsulin signaling pathway   IEA 6907045 KEGGrno:04910
PyglRatstarch and sucrose metabolic pathway  IEA 6907045 KEGGrno:00500

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#
Reference Title
Reference Citation
1. High frequency of missense mutations in glycogen storage disease type VI. Beauchamp NJ, etal., J Inherit Metab Dis. 2007 Oct;30(5):722-34. Epub 2007 Aug 21.
2. Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors. Birch AM, etal., Bioorg Med Chem Lett. 2007 Jan 15;17(2):394-9. Epub 2006 Oct 19.
3. Modulation of glycogen phosphorylase activity affects 5-phosphoribosyl-1-pyrophosphate availability in rat hepatocyte cultures. Boer P and Sperling O, Nucleosides Nucleotides Nucleic Acids. 2004 Oct;23(8-9):1235-9.
4. Structural relationships among regulated and unregulated phosphorylases. Buchbinder JL, etal., Annu Rev Biophys Biomol Struct. 2001;30:191-209.
5. Glucose has to be phosphorylated to activate glycogen synthase, but not to inactivate glycogen phosphorylase in hepatocytes. Carabaza A, etal., FEBS Lett. 1992 Jan 20;296(2):211-4.
6. Identification of a mutation in liver glycogen phosphorylase in glycogen storage disease type VI. Chang S, etal., Hum Mol Genet. 1998 May;7(5):865-70.
7. Liver glycogen storage diseases due to phosphorylase system deficiencies: diagnosis thanks to non invasive blood enzymatic and molecular studies. Davit-Spraul A, etal., Mol Genet Metab. 2011 Sep-Oct;104(1-2):137-43. doi: 10.1016/j.ymgme.2011.05.010. Epub 2011 May 17.
8. Regulation of rat hepatocyte function by P2Y receptors: focus on control of glycogen phosphorylase and cyclic AMP by 2-methylthioadenosine 5'-diphosphate. Dixon CJ, etal., J Pharmacol Exp Ther. 2004 Oct;311(1):334-41. Epub 2004 May 19.
9. Evidence against glycogen cycling of gluconeogenic substrates in various liver preparations. Fosgerau K, etal., J Biol Chem 2002 Aug 9;277(32):28648-55.
10. The gene encoding rat liver glycogen phosphorylase contains multiple polyadenylation signal sequences. Froman BE, etal., Gene 1991 Dec 30;109(2):269-74.
11. Defect in glucokinase translocation in Zucker diabetic fatty rats. Fujimoto Y, etal., Am J Physiol Endocrinol Metab. 2004 Sep;287(3):E414-23. Epub 2004 May 11.
12. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
13. Localization of the muscle, liver, and brain glycogen phosphorylase genes on linkage maps of mouse chromosomes 19, 12, and 2, respectively. Glaser T, etal., Genomics 1989 Oct;5(3):510-21.
14. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
15. Rapid activation of glycogen phosphorylase by steroid hormones in cultured rat hepatocytes. Gomez-Munoz A, etal., Biochem J. 1989 Sep 1;262(2):417-23.
16. Glycogen phosphorylase: control by phosphorylation and allosteric effectors. Johnson LN FASEB J. 1992 Mar;6(6):2274-82.
17. Glycogen synthesis by rat hepatocytes. Katz J, etal., Biochem J. 1979 May 15;180(2):389-402.
18. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
19. Response of glucose metabolism enzymes in an acute porphyria model. Role of reactive oxygen species. Lelli SM, etal., Toxicology. 2005 Dec;216(1):49-58. Epub 2005 Aug 24.
20. Glycogen phosphorylase isoenzymes from hepatoma 3924A and from a non-tumorigenic liver cell line. Comparison with the liver and brain enzymes. Mayer D, etal., Biochem J. 1992 Mar 15;282 ( Pt 3):665-73.
1 to 20 of 35 rows
PMID:3209063   PMID:8482535   PMID:9529348   PMID:10949035   PMID:10980448   PMID:11960689   PMID:12204691   PMID:12519761   PMID:12823547   PMID:15489334   PMID:17693424   PMID:18298402  
PMID:19498109   PMID:22225877   PMID:23012479   PMID:23533145   PMID:32357304  



Pygl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8694,433,558 - 94,476,219 (-)NCBIGRCr8
mRatBN7.2688,697,598 - 88,740,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,697,593 - 88,740,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,096,834 - 89,133,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0689,396,285 - 89,433,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,835,817 - 88,872,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,597,759 - 92,643,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,597,706 - 92,643,847 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,045,144 - 102,091,119 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4692,298,339 - 92,341,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1692,301,796 - 92,344,803 (-)NCBI
Celera687,191,869 - 87,228,313 (-)NCBICelera
Cytogenetic Map6q24NCBI
PYGL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,905,217 - 50,944,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1450,857,891 - 50,944,483 (-)EnsemblGRCh38hg38GRCh38
GRCh371451,371,935 - 51,411,201 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361450,441,687 - 50,480,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 341450,441,688 - 50,480,984NCBI
Celera1431,238,983 - 31,278,301 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1431,497,509 - 31,536,798 (-)NCBIHuRef
CHM1_11451,310,446 - 51,349,770 (-)NCBICHM1_1
T2T-CHM13v2.01445,111,656 - 45,150,908 (-)NCBIT2T-CHM13v2.0
Pygl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391270,237,589 - 70,274,457 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1270,237,585 - 70,278,262 (-)EnsemblGRCm39 Ensembl
GRCm381270,190,815 - 70,227,683 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1270,190,811 - 70,231,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv371271,291,802 - 71,328,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,109,416 - 71,146,222 (-)NCBIMGSCv36mm8
Celera1271,292,479 - 71,327,360 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.01NCBI
Pygl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540911,970,112 - 12,007,102 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540911,970,112 - 12,007,102 (+)NCBIChiLan1.0ChiLan1.0
PYGL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21552,042,469 - 52,082,068 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11451,234,331 - 51,299,970 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01431,494,172 - 31,533,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11449,793,210 - 49,832,786 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1449,746,309 - 49,832,786 (-)Ensemblpanpan1.1panPan2
PYGL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1827,264,778 - 27,307,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl827,223,273 - 27,307,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha827,018,142 - 27,061,230 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0827,443,863 - 27,486,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl827,401,678 - 27,486,986 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1827,098,985 - 27,141,894 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0827,171,662 - 27,214,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0827,519,107 - 27,562,008 (-)NCBIUU_Cfam_GSD_1.0
Pygl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864059,463,043 - 59,498,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649514,692,332 - 14,730,231 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649514,692,688 - 14,728,663 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYGL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1180,620,314 - 180,719,979 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11180,645,849 - 180,704,124 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,933,155 - 200,991,988 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PYGL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12427,987,676 - 28,030,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2427,987,649 - 28,030,869 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605316,283,872 - 16,325,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pygl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473117,990,977 - 18,028,186 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473117,990,877 - 18,028,351 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pygl
333 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
6 102053536 102053537 G A snv HTX/Kyo (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000009183
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat

1 to 10 of 29 rows
RH131951  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,223,328 - 2,223,512 (+)MAPPERmRatBN7.2
Rnor_6.0692,629,544 - 92,629,727NCBIRnor6.0
Rnor_6.0143,240,565 - 3,240,748NCBIRnor6.0
Rnor_5.0143,241,157 - 3,241,340UniSTSRnor5.0
Rnor_5.06102,076,929 - 102,077,112UniSTSRnor5.0
RGSC_v3.4142,781,150 - 2,781,333UniSTSRGSC3.4
Celera142,241,986 - 2,242,169UniSTS
RH 3.4 Map1437.2UniSTS
Cytogenetic Map14p22UniSTS
Cytogenetic Map6q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000009183   ⟹   ENSRNOP00000009183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl688,697,593 - 88,740,310 (-)Ensembl
Rnor_6.0 Ensembl692,597,706 - 92,643,847 (-)Ensembl
RefSeq Acc Id: NM_022268   ⟹   NP_071604
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,433,558 - 94,476,219 (-)NCBI
mRatBN7.2688,697,598 - 88,740,260 (-)NCBI
Rnor_6.0692,597,759 - 92,643,734 (-)NCBI
Rnor_5.06102,045,144 - 102,091,119 (-)NCBI
RGSC_v3.4692,298,339 - 92,341,347 (-)RGD
Celera687,191,869 - 87,228,313 (-)RGD
Sequence:
RefSeq Acc Id: NP_071604   ⟸   NM_022268
- UniProtKB: P09811 (UniProtKB/Swiss-Prot),   A6HBY8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009183   ⟸   ENSRNOT00000009183

Name Modeler Protein Id AA Range Protein Structure
AF-P09811-F1-model_v2 AlphaFold P09811 1-850 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694644
Promoter ID:EPDNEW_R5166
Type:initiation region
Name:Pygl_1
Description:glycogen phosphorylase L
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0692,643,810 - 92,643,870EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37214 BioCyc
BioCyc Pathway PWY-5941 [glycogen degradation II] BioCyc
BioCyc Pathway Image PWY-5941 BioCyc
Ensembl Genes ENSRNOG00000006388 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009183 ENTREZGENE
  ENSRNOT00000009183.6 UniProtKB/Swiss-Prot
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7100896 IMAGE-MGC_LOAD
InterPro Glycg_phsphrylas UniProtKB/Swiss-Prot
  Glyco_trans_35 UniProtKB/Swiss-Prot
  Pyridoxal_P_attach_site UniProtKB/Swiss-Prot
KEGG Report rno:64035 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91696 IMAGE-MGC_LOAD
NCBI Gene 64035 ENTREZGENE
PANTHER GLYCOGEN PHOSPHORYLASE, LIVER FORM UniProtKB/Swiss-Prot
  PTHR11468 UniProtKB/Swiss-Prot
Pfam Phosphorylase UniProtKB/Swiss-Prot
PhenoGen Pygl PhenoGen
PIRSF Pprylas_GlgP UniProtKB/Swiss-Prot
PROSITE PHOSPHORYLASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006388 RatGTEx
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/Swiss-Prot
UniProt A6HBY8 ENTREZGENE, UniProtKB/TrEMBL
  A6HBY9_RAT UniProtKB/TrEMBL
  A6HBZ0_RAT UniProtKB/TrEMBL
  P09811 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-18 Pygl  glycogen phosphorylase L  Pygl  phosphorylase, glycogen, liver  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-11 Pygl  phosphorylase, glycogen, liver  Pygl  liver glycogen phosphorylase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Pygl  liver glycogen phosphorylase      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Pygl  liver glycogen phosphorylase      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_disease inhibition of enzyme activity inhibits glyocogenolysis without altering gluconeogenesis and may have application to treatment of type 2 diabetes 729891