Advanced Search (OLGA)

Gene: Fat3 (FAT atypical cadherin 3) Rattus norvegicus

Analyze

Symbol:

Fat3

Name:

FAT atypical cadherin 3

RGD ID:

620657

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion mediated by cadherin. Predicted to act upstream of or within generation of neurons; negative regulation of dendrite development; and retina layer formation. Predicted to be located in dendrite. Predicted to be active in adherens junction and plasma membrane. Orthologous to human FAT3 (FAT atypical cadherin 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FAT tumor suppressor homolog 3; FAT tumor suppressor homolog 3 (Drosophila); Fta3 protein; protocadherin Fat 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAT3 (FAT atypical cadherin 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fat3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fat3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAT3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAT3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fat3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAT3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAT3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fat3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fat3 (FAT atypical cadherin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FAT3 (FAT atypical cadherin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fat3 (FAT atypical cadherin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fat3a (FAT atypical cadherin 3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdh-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kug	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kug	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	snrpf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fat3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	20,972,840 - 21,555,679 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	20,972,840 - 21,555,240 (-)	Ensembl				GRCr8
mRatBN7.2	8	12,691,470 - 13,274,336 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	12,694,019 - 13,273,135 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	16,682,525 - 17,258,197 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	14,980,283 - 15,555,971 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	12,959,478 - 13,530,483 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	14,417,039 - 15,011,596 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	14,417,584 - 14,880,644 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	14,504,017 - 15,096,304 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	12,701,734 - 13,283,589 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	14,159,097 - 14,735,217 (-)	NCBI		Celera
RGSC_v3.1	8	12,701,733 - 13,283,589 (-)	NCBI
Cytogenetic Map	8	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

esophagus squamous cell carcinoma (ISO)

Hirschsprung's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloroethane (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acetylsalicylic acid (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

ammonium chloride (EXP)

amosite asbestos (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

cisplatin (ISO)

clobetasol (ISO)

crocidolite asbestos (ISO)

D-glucose (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

formaldehyde (ISO)

fructose (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (EXP,ISO)

graphite (EXP)

ivermectin (ISO)

ketamine (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (EXP)

N,N-diethyl-m-toluamide (EXP)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paraquat (ISO)

PCB138 (ISO)

permethrin (EXP)

Ptaquiloside (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure formation involved in morphogenesis (IEA)

animal organ morphogenesis (IEA)

cell adhesion (IEA)

cell morphogenesis (ISO)

cell morphogenesis involved in neuron differentiation (IEA)

cell-cell adhesion mediated by cadherin (IBA)

dendrite development (IEA)

homophilic cell-cell adhesion (IEA)

negative regulation of dendrite development (ISO)

neuron migration (IEA,ISO)

regulation of plasma membrane bounded cell projection organization (IEA)

retina layer formation (ISO)

Cellular Component

adherens junction (IBA)

dendrite (IEA,ISO)

membrane (IEA)

neuron projection (IEA)

plasma membrane (IBA,IEA)

Molecular Function

calcium ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Mammalian fat3: a large protein that contains multiple cadherin and EGF-like motifs.	Mitsui K, etal., Biochem Biophys Res Commun 2002 Feb 1;290(4):1260-6.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21903076	PMID:30361391

Genomics

Comparative Map Data

Fat3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	20,972,840 - 21,555,679 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	20,972,840 - 21,555,240 (-)	Ensembl				GRCr8
mRatBN7.2	8	12,691,470 - 13,274,336 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	12,694,019 - 13,273,135 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	16,682,525 - 17,258,197 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	14,980,283 - 15,555,971 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	12,959,478 - 13,530,483 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	14,417,039 - 15,011,596 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	14,417,584 - 14,880,644 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	14,504,017 - 15,096,304 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	12,701,734 - 13,283,589 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	14,159,097 - 14,735,217 (-)	NCBI		Celera
RGSC_v3.1	8	12,701,733 - 13,283,589 (-)	NCBI
Cytogenetic Map	8	q12	NCBI

FAT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	92,224,818 - 92,896,473 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	92,224,818 - 92,896,473 (+)	Ensembl			hg38	GRCh38
GRCh37	11	91,957,984 - 92,629,639 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	91,724,910 - 92,269,284 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	89,389,818 - 89,934,254 (+)	NCBI		Celera
Cytogenetic Map	11	q14.3	NCBI
HuRef	11	88,175,033 - 88,720,594 (+)	NCBI		HuRef
CHM1_1	11	91,968,261 - 92,512,715 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	92,147,480 - 92,825,282 (+)	NCBI		T2T-CHM13v2.0

Fat3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	15,821,485 - 16,413,981 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	15,821,485 - 16,412,581 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	15,910,189 - 16,502,681 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	15,910,189 - 16,501,285 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	15,714,637 - 16,182,675 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	15,660,586 - 16,128,624 (-)	NCBI		MGSCv36	mm8
Celera	9	13,190,165 - 13,658,604 (-)	NCBI		Celera
Cytogenetic Map	9	A2	NCBI
cM Map	9	5.16	NCBI

Fat3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	1,472,067 - 1,962,265 (-)	Ensembl
ChiLan1.0	NW_004955414	1,467,087 - 2,083,914 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	93,086,949 - 93,766,131 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	94,174,805 - 94,856,216 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	87,242,937 - 87,921,955 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	90,737,036 - 91,417,091 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

FAT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	7,711,304 - 8,355,609 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	7,711,995 - 8,213,266 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	7,726,049 - 8,305,922 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	7,887,082 - 8,530,931 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	7,887,107 - 8,388,711 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	7,673,213 - 8,316,021 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	7,741,688 - 8,385,411 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	7,786,294 - 8,429,295 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	77,516,471 - 78,120,541 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936674	1,775,744 - 2,374,883 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936674	1,770,884 - 2,104,909 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	24,772,394 - 25,476,424 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	28,097,757 - 28,730,250 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	83,471,266 - 84,159,858 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	83,609,116 - 84,158,537 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	41,615,074 - 42,308,057 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fat3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	37,094,858 - 37,622,688 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	36,951,642 - 37,627,652 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fat3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	11,640,317 - 12,096,895 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fat3
2709 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	94
Count of miRNA genes:	76
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000015977
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

D8Rat170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	21,241,834 - 21,242,024 (+)	Marker Load Pipeline
mRatBN7.2	8	12,960,479 - 12,960,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	14,683,954 - 14,684,143	NCBI	Rnor6.0
Rnor_5.0	8	14,770,616 - 14,770,805	UniSTS	Rnor5.0
RGSC_v3.4	8	12,964,628 - 12,964,817	UniSTS	RGSC3.4
RGSC_v3.4	8	12,964,627 - 12,964,817	RGD	RGSC3.4
Celera	8	14,423,435 - 14,423,624	UniSTS
RGSC_v3.1	8	12,964,557 - 12,964,834	RGD
FHH x ACI Map	8	4.9	UniSTS
FHH x ACI Map	8	4.9	RGD
Cytogenetic Map	8	q12	UniSTS

D8Got12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	13,162,460 - 13,162,668 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	14,885,520 - 14,885,727	NCBI	Rnor6.0
Rnor_5.0	8	14,971,603 - 14,971,810	UniSTS	Rnor5.0
RGSC_v3.4	8	13,171,130 - 13,171,337	UniSTS	RGSC3.4
RGSC_v3.4	8	13,171,129 - 13,171,337	RGD	RGSC3.4
RGSC_v3.1	8	13,171,130 - 13,171,337	RGD
RH 3.4 Map	8	131.4	UniSTS
RH 3.4 Map	8	131.4	RGD
Cytogenetic Map	8	q12	UniSTS

D8Got13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	13,180,211 - 13,180,494 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	14,903,278 - 14,903,558	NCBI	Rnor6.0
Rnor_5.0	8	14,989,314 - 14,989,594	UniSTS	Rnor5.0
RGSC_v3.4	8	13,188,751 - 13,189,069	RGD	RGSC3.4
RGSC_v3.4	8	13,188,751 - 13,189,031	UniSTS	RGSC3.4
Celera	8	14,642,271 - 14,642,551	UniSTS
RGSC_v3.1	8	13,188,751 - 13,189,031	RGD
RH 3.4 Map	8	139.5	UniSTS
RH 3.4 Map	8	139.5	RGD
Cytogenetic Map	8	q12	UniSTS

D8Uia6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	12,712,294 - 12,712,417 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	14,434,426 - 14,434,548	NCBI	Rnor6.0
Rnor_5.0	8	14,521,088 - 14,521,210	UniSTS	Rnor5.0
RGSC_v3.4	8	12,715,554 - 12,715,676	UniSTS	RGSC3.4
Celera	8	14,175,617 - 14,175,739	UniSTS
Cytogenetic Map	8	q12	UniSTS

AU047810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	20,980,456 - 20,980,639 (+)	Marker Load Pipeline
mRatBN7.2	8	12,699,086 - 12,699,269 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	14,420,382 - 14,420,564	NCBI	Rnor6.0
Rnor_5.0	8	14,507,360 - 14,507,542	UniSTS	Rnor5.0
RGSC_v3.4	8	12,705,074 - 12,705,256	UniSTS	RGSC3.4
Celera	8	14,162,437 - 14,162,619	UniSTS
Cytogenetic Map	8	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	10	67	163	62	61	30	32	30	6	255	130	11	142	79	91	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001413472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB076401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015977 ⟹ ENSRNOP00000015976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	20,977,117 - 21,554,472 (-)	Ensembl
mRatBN7.2 Ensembl	8	12,695,747 - 13,273,135 (-)	Ensembl
Rnor_6.0 Ensembl	8	14,417,584 - 14,880,644 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109404 ⟹ ENSRNOP00000096648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	20,972,840 - 21,555,240 (-)	Ensembl
mRatBN7.2 Ensembl	8	12,694,019 - 13,273,135 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118830 ⟹ ENSRNOP00000089392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	20,976,657 - 21,555,240 (-)	Ensembl
mRatBN7.2 Ensembl	8	12,694,019 - 13,273,135 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173498 ⟹ ENSRNOP00000112789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	20,972,840 - 21,555,240 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173686 ⟹ ENSRNOP00000112730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	20,972,840 - 21,555,240 (-)	Ensembl

RefSeq Acc Id:

NM_001413472 ⟹ NP_001400401

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,555,240 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,273,903 (-)	NCBI

RefSeq Acc Id:

NM_138544 ⟹ NP_612553

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,977,117 - 21,554,472 (-)	NCBI
mRatBN7.2	8	12,695,747 - 13,273,135 (-)	NCBI
Rnor_6.0	8	14,417,043 - 15,011,596 (-)	NCBI
Rnor_5.0	8	14,504,017 - 15,096,304 (-)	NCBI
RGSC_v3.4	8	12,701,734 - 13,283,589 (-)	RGD
Celera	8	14,159,097 - 14,735,217 (-)	RGD

Sequence:

show sequence

GTGAAAGGTTCTAAATGACACCCGACTTTGAACCGGTGCGACAGTTTGGCCGAGATGCCAGGAG
CGGATCCCTGTTGTTTTGACGGGAAGATGAACACGAATGGTTTGGGAGAACGCATGATTTTTGG
CGGGCGTCAGGACTGGCTGTGCTATTTGAAAAGAGAATAGCGCTAGTCTGGTCATCCCAGGGAT
GCTGAACAGCCCTTGCTGCTCCTTGTGGGCACGTTGAAGGCTCAGTGTGGCGCGCCGCGAGTCC
TTTCCCGAAGGACGGACATGTGATAAAATGGGTGTGACCATGAGACACTGTATTGACACAAGGC
CTCCTTCCTGCCTCATTTTCCTGCTCCTGAAGCTGTGTGCCACCGTCTCCCAGGGGCTGCCAGG
AACAGGGCCCTTGGGCTTCCACTTCACGCATGCTCTCTATAACGCTACAGTGTATGAGAACTCA
GCAGCGCGGACCTATGTCAACAGCCAGAGCAGAATGGGCATCACCTTAATAGACCTGTCCTGGG
ACATCAAGTACAGAATAGTGTCCGGTGATGAGGAAGGATTTTTCAAAGCTGAGGAGGTCATTAT
TGCAGATTTCTGCTTTCTCAGGATAAGAACTAAAGGTGGCAATTCTGCCATATTGAACAGGGAA
ATCCAAGACAATTATTTATTAATCATAAAAGGTTCTGTCAGAGGAGAAGACTTGGAAGCATGGA
CCAAAGTAAACATCCAGGTTTTAGACATGAATGACTTGAGGCCTCTGTTTTCACCAACCACCTA
CTCGGTCACCATCGCAGAAAGCACACCACTCAGGACTAGCGTTGCCCAGGTGACGGCCACAGAT
GCAGATATCGGTTCCAATGGGGAATTCTACTACTACTTCAAAAACAAGGTTGATCTTTTTTCAG
TTCACCCCACGAGTGGTGTCATCTCTTTAAGTGGACGGTTGAATTATGACGAGAAGAACAGATA
TGATCTAGAAATCTTAGCAGTGGACCGGGGGATGAAACTCTATGGCAATAATGGAGTGAGCAGT
ACTGCCAAGCTTTATGTTCACATTGAACGCATAAACGAACATGCTCCAATTATCCATGTGGTCA
CTCACACACCTTTCTCATTGGACAAGGAGCCAACATATGCAGTAGTGACAGTTGATGACCTGGA
TGAGGGGGCCAATGGAGAGATCGAATCTGTTTCCATTGTGGATGGAGATCCTTTAGAGCAGTTC
TTCCTGGCTAAGGAAGGAAAGTGGATGAATGAGTATAAAGTCAAGGAGAGAAGGCAGGTGGACT
GGGAAAGCTTCTCCTATGGCTATAACCTCACTATTCAAGCAAAAGACAAAGGGTCACCTCAGAA
GTTCTCAGAACTAAAGACAGTCCACATTGCTAACCCCAGGAGAGACAGCACCCCAATAAAGTTT
GAAAAGGATGTCTATGACATCAGTATAAGTGAGTTTTCCCCTCCTGGTGTCATGGTAGCCATCG
TCAAGGTCAATCCTGAGCCACTGGACGTGGAATACAAACTATTGCCTGGTAAGGATGCAGAGTA
CTTCAAAATTAATCCCAGGTCAGGTCTTATCGTCACAGCCCAGCCCTTGAATACAGTCAAGAAG
GAAGTTTATAAACTGGAAGTGTCAGACAAGGAAGGAGACGCAAAGGCACAAGTCACTATTGGGA
TTGAAGATGCCAATGACCACACCCCAGAATTCCAGGAGACACTGTATGAGACTTTTGTGAATGA
GAGTGTCCCTGTTGGTACAAATGTTCTCACTGTGTCTGCCTCTGATAAGGATAAAGGGGAAAAT
GGTTACATCACCTACAGCATCGCCAGCCTAAACCTTTTACCGTTTGCCATTAACCAGTTCACAG
GTGTGATCAGCACAACTGAAGAGTTAGATTTCGAATCCTCCCCAGAAACATATAGATTCATTGT
GAGAGCCTCTGACTGGGGCTCCCCATACCGCCATGAAAGTGAGGTCAATGTGACCATTCGAGTA
GGAAATGTCAATGACAACAGCCCTCTCTTTGAAAAAGTGGCTTGCCAGGGAGTTATTTCATATG
ACTTTCCTGTTGGGGGTCACATCACGGCCATCTCTGCTATTGATATTGACGAACTTGAACTTGT
AAAGTACAAAATCATTTCTGGAAATGAACTTGGGTTTTTTTATTTAAACCCAGACTCTGGCGTT
TTGCAGCTTAAGAAGTCACTGATGAATTCTGGCATTAAAAATGGCAATTTTGCCCTCAGAATCA
CAGCTACTGATGGAGAAAACTTTGCAGACCCCATGGCCATTAACATCTCAGTTCTCCATGGGAA
AGTGTCTTCAAAGAGCTTCAGTTGCAGAGAAACGCGTGTGGCTCAGAAATTGGCAGAGAAACTA
CTCATTAAAGCAAAAGCTAATGGGAAACTGAATCAAGAAGATGGATTTCTTGACTTTTATTCGA
TTAATAGGCAAGGACCACATTTTGACAAGTCTTTTCCCTCTGATGTGGCTGTAAAGGAGAACAT
GCCAGTAGGAACTAACATCCTGAAGATTAAAGCCTATGATGCCGACTCTGGCTTCAATGGGAAG
GTGCTATTTACAATATCAGATGGAAACACAGACAGCTGCTTCAATATTGATATGGAGACTGGAC
AACTTAAAGTCCTCATGCCCATGGACCGAGAGCATACAGACCTCTATGTCCTCAACATAACTAT
CTATGACCTTGGAAAGCCACAGAAATCGTCATGGCGTTTGCTGACTGTCAACGTGGAGGATGCT
AATGACAATAGCCCAGTGTTTCTTCAGGACAGCTACTCAGTCAGCATTCTTGAAAGTTCAAGTA
TTGGAACAGAGATTATTCAAGTGGAAGCAAGAGACAAAGACCTAGGTTCTAATGGTGAGGTAAC
ATACTCAGTCTTGACAGACACGCACCAGTTTGTCATCAATAGCTCAACTGGGATTGTCTATATA
GCCGATCAATTGGACAGAGAATCCAAAGCCAACTATTCTTTGAAAATAGAAGCCAGGGACAAAG
CAGAAAGTGGCCAGCAGCTGTTTTCTGTTGTCACCCTGAAGATCTTTCTAGATGATGTCAATGA
CTGTTCTCCAGCATTTATCCCTAGTAGCTACAGTGTGAAAGTCCTTGAAGATCTTCCAGTTGGC
ACAGTCATTGCCTGGCTTGAGACTCAGGATCCTGACCTTGGATTGGGGGGGCAAGTACGTTACT
CATTGGTCAATGATTATAATGGGAGATTTGAAATTGACAAGGCAAGTGGTGCCATCCGCTTGAG
CAAAGAGCTTGACTATGAAAAGCAGCAGTTCTACAACCTGACAGTCAGGGCCAAAGACAAAGGG
CGGCCTGTCTCTCTGTCATCAATTTCTTTTGTTGAGGTGGAGGTGGTAGATGTCAATGAAAACC
TTCATACACCATATTTCCCAGACTTTGCTGTTGTTGGATCTGTCAAAGAAAACTCACGGATTGG
AACAAGCGTGCTGCAGGTGACTGCCCATGATGAGGATTCTGGTAGGGATGGAGAGATCCAGTAC
TCCATCAGAGACGGCAGTGGTCTTGGGAGGTTCAATATAGACGATGAGAGTGGAGTCATCACTG
CTGCTGACATTCTTGATCGAGAGACAACAGCGTCCTACTGGCTGACAGTGTATGCCACAGACCG
GGGCGTGGTCCCTCTTTACTCCACCATTGAGGTCTACATAGAAGTAGAAGATGTGAACGACAAT
GCCCCACTGACCTCAGAGCCCATCTATTATCCCGTTGTCATGGAGAATTCTCCGAAGGATGTGT
CTGTCATTCAGATTCAAGCTGAAGATCCCGACTCTGGTTCCAATGAAAAACTGACCTATAGGAT
TACAAGTGGAAACCCACAGAACTTTTTCGCCATCAATATCAAAACAGGTCTGATTACCACGACT
TCAAGGAAATTGGATCGAGAGCAGCAGGCAGAACATTTTCTTGAGGTGACAGTGACGGATGGCG
GTTCTTCTCCGAAACAGTCAACCATTTGGGTGGTAGTTCAGGTTCTAGATGAAAATGACAACAA
GCCCCAGTTCCCTGAGAAGGTCTACCAGATCAAGCTTCCAGAGCGTGACCGAAAGAAGAGGGGT
GAACCCATTTACAGGGCTTTTGCATTTGACAGAGACGAAGGCCCCAATGCAGAAATCTCCTACA
GTATTGTGGATGGGAACGATGATGGAAAGTTCTTTATTGACCCGAAAACTGGCATGGTCTCTTC
CAGAAAGCAATTCACAGCAGGAAGTTATGACATCCTGACGATCAAGGCTGTGGACAATGGCCGC
CCACAGAAATCCTCCACTGCCCGCCTCCACATCGAATGGATTAAGAAGCCCCCACCTTCACCTA
TACCATTGACATTCGATGAACCATTTTACAACTTCACCATCATGGAGAGTGACAAAGTAACAGA
GATTGTAGGGGTGGTGTCTGTGCAGCCAGCTAACACCCCTCTGTGGTTTGACATCATCGGGGGG
AATTTTGACAGCTCTTTTGATGCAGAGAAGGGTGTTGGAACAATTGTCATTGCAAAGCCTTTGG
ATGCAGAGCAAAGGTCAGTCTACAACATGAGCGTGGAGGTCACCGATGGAACAAATGTTGCTGT
CACTCAGGTATTTATTACGGTGCTGGATAATAATGATAATGGCCCAGAATTCTCCCAGCCACAT
TATGATGTGACCATTTCTGAGGACGTGCCTCCTGACACGGAGATACTGCAGATTGAGGCCACAG
ACAGAGATGAGAAGCACAAGCTAAGCTACACCATCCACAGTAGCATCGATGCCATCAGCATGAG
GAAATTCCGGATAGACCCCAGTACAGGCGTGCTCTACACTGCTGAAAGGCTGGACCATGAGGCC
CAGGACAAGCACATCCTCAACATAATGGTCAGAGATCAGGAATTTCCTTACCGAAGAAACTTGG
CCCGAGTCATTGTGAATGTGGAAGATGCTAACGACCATAGTCCTTACTTCACCAATCCACTGTA
TGAAGCATCGGTGTTCGAATCAGCAGCTCTGGGATCAGTTGTTCTGCAAGTGACAGCTCTGGAC
AAAGACAAGGGGGAAAACGCAGAGCTCATATATTCCATTGAAGCAGGGAACACAGGGAACACGT
TTAAGATTGAACCAGTCCTGGGCATCATCACCATTTCCAAAGAGCCAGACATGACAGCCATGGG
TCAGTTTGTCCTGTCAGTTAAAGTCACAGATCAAGGCTCGCCACCAATGTCTGCCACTGCAATT
GTCCGCATCTCCATCAGCATGTCTGATAACTCCCACCCCAAGTTCACTCACAAAGACTACCAAG
CTGAAGTAAATGAAAATGTGGATATTGGAACGTCTGTCATCCTGATCTCAGCCATCAGCCAGTC
AACCCTAATCTATGAAGTCAAAGATGGAAACATCAATGGAGTCTTTACCATAAATCCATATTCT
GGAGTCATCACCACTAGGAGAGCTCTGGATTATGAACATACCTCTTCCTATCAACTCATCATTC
AGGCCACTAACATGGCAGGCATGGCTTCCAATGCCACCGTCAGTGTGCAGGTTGTGGATGAAAA
TGATAACCCCCCTGTGTTTCTCTTTTCTCAATACTCAGGTAGCCTGAGTGAGGCTGCCCCCATC
AACAGCCTTGTCAGGAGCCTAGACAACAGCCCACTGGTAATCCGAGCCACAGACGCTGACAGTA
ACCAAAACGCACTCCTGGTGTATCAGATCGTGGAGTCCACAGCCAAGAAGTTCTTCACAGTGGA
CTCTAGCACAGGAGCCATTAGAACAATCGCCAACCTGGACCATGAAGTCATCGCACACTTCCAC
TTCCATGTGCACGTGAGAGACAGCGGGAACCCACAGCTAACTGCAGAGAGTCCAGTTGAGGTCA
ACATTGAGGTGACAGATGTGAATGATAATCCACCCGTGTTCACTCAGGCTGTGTTTGAAACTGT
CTTGCTTCTCCCCACCTACGTTGGTGTGGAGGTTCTAAAGGTGAGCGCCACAGACCCTGACTCT
GAGGTACCCCCTGAACTGACATACAGTCTCATGGAAGGAAGTGTGGATCATTTTCTAATGGACC
CAAATACTGGAGTGCTTACCATAAAAAATAATAATCTCTCCAAAGATCACTACATGCTAATAGT
CAGAGTATCTGATGGGAAGTTCTACAGTACTGCCATGGTCACCATCATGGTTAAAGAAGCCATG
GACAGTGGCCTCCACTTCACACAAAGCTTTTATTCCACCTCCATTTCAGAGAACAGCACAAACA
TAACCAAAGTTGCTATTGTCAATGCAGTTGGAAACCGCCTTAATGAGCCCTTAAAATACAGCAT
CTTAAACCCAGGAAATAAATTCAAGATAAAATCTACCTCAGGAGTCATTCAAACCACAGGAGTC
CCCTTTGACCGTGAAGAACAGGAGTTATATGAGTTGGTGGTGGAAGCCAGTCGTGAGCTAGACC
ATTTGCGTGTGGCGAGGGTGGTAGTCAGGGTTAACATTGAAGATGTAAATGACAACTCTCCTGT
CTTTGTGGGTCTCCCTTACTATGCTGCTGTGCAAGTTGATGCTGAGCCAGGGACTCTGATATAC
CGGGTAACAGCCATCGACAAAGATAAAGGTGCCAATGGAGAAGTGACCTACGTCTTGCAGGATG
ACTATGGTCACTTTGAAATTAACCCTAATTCAGGGAATGTGATTTTAAAAGAAGCGTTCAACTC
AGATCTCTCCAACATTGACTATGGAGTCACCATTCTTGCCAAGGATGGTGGCACTCCTTCTCTG
TCCACATTTGTGGAACTTCCCATCACCATTGTTAACAAAGCAATGCCTGTGTTTGATAAGCCTT
TTTATACAGCATCAATCAATGAAGATATCTCAATAAACACTCCCATCCTCAGCATCAATGCCAC
CAGCCCAGAAGGCCAGGGCATCATATACCTCATCATCGATGGAGATCCCTTCCAACAGTTTAAC
ATTGACTTTGACACTGGGGTCCTAAAAGTCATTAGTCCTTTGGATTATGAAGTCATGTCAGTTT
ACAAGTTGACAGTGAGAGCTAGTGATGCTCTTACTGGTGCCAGGGCTGAAGTCACTGTGGACCT
GCTAGTGGATGATGTCAATGATAACCCTCCTGTTTTTGATCAGCCCACTTACAACACAACACTA
TCTGAATCGTCTCTTATTGGAACACCTGTTCTGCAACTTGTGTCAACTGACGCAGACTCGGGAA
ACAACAACCTGGTCCATTATCAGATTGTCCAGGATACTTACAATAGCACAGACTACTTTCACAT
AGATAGTTCAAGTGGCTTAATTCTGACAGCGAGGATGCTAGACCATGAATTGGTGCAACACTGC
ACCTTGAAAGTCACAGCAACTGATAATGGTTTTCCATCCCTAAGCAGTGAAGTCCTGGTTCAAA
TCTACATTTCTGATGTCAATGACAACCCTCCAGTTTTTAATCAGCTCATTTATGAATCTTATGT
GAGTGAATTAGCCCCCCGGGGTCATTTTGTAACCTGTGTGCAAGCCTCAGATGCAGACAGCTCT
GACTTTGACCGGTTGGAATACAGCATTTTATCTGGGAATGATCGAACCAGCTTTCTGATGGACA
GCAAGAGTGGAGTTCTCACACTGTCTAGCCACCGGAAGCAGCGTATGGAGCCTCTGTATAGTCT
CAATGTGTCTGTGTCTGATGGACTGTTTACCAGCACTGCCCAGGTTCACATCAGGGTTCTTGGG
GCTAATTTGTACAGCCCTGCCTTTTCACAAAGCACATACGTAGCTGAGGTAAGAGAGAATGCAG
CCTCTGGGACAAAGGTCATTCATGTCCGAGCCACAGATGGGGATCCAGGAACATATGGACAGGT
CAGCTATTCCATCATCAATGACTTTGCCAAGGATCGGTTCCTCATAGACAGCAATGGACAGATC
ATCACGACAGAAAGACTAGACCGTGAAAACCCTCTGGAAGGAGATATTAGTATTTATCTGAGGG
CCCTGGATGGTGGAGGGAGAACTACGTTCTGCACCGTGCGGGTGATTGTGGTGGATGAGAATGA
CAATGCCCCTCAGTTCATGACACTGGAATACAGGGCCAGCGTCAGAGCTGACGTGGGAAGGGGC
CACTTGGTCACACAAGTTCAAGCTTTGGATCCAGATGATGGAGCAAACTCTAGGATTACATATT
CCCTCTATAGTGAGGCCTCAGTGTCAGTGGCTGACCTCTTGGAAATTGATCCTGATAATGGCTG
GATGGTGACCAAAGGCAATTTTAACCAACTAAGAAACACGGTGCTGTCCTTCTTCGTGAAGGCA
GTAGATGGTGGCATTCCAGTCAGACACTCCCTCATCCCCGTCTACATCCATGTCCTGCCCCCTG
AAACGTTTCTGCCTTCATTCACCCAGTCTCAGTACTCCTTTACCATTGCAGAAGATACATCCAT
TGGAAGCACAATAGACACCTTGAGGATTCTACCCAATCAAAGTGTCCGGTTCAGCACGGTTAAT
GGAGAACGGCCAGAGAATAACAAAGAGAATGTCTTCATCATAGAACAAGAGACAGGTGCTATCA
AGCTTGACAAACGCCTTGACCATGAAGTCAGCCCAGCTTTCCACTTTAAAGTAGCAGCTACTAT
ACCCTTGGACAAAGTGGATATTGTTTTCACTGTGGATGTAGATGTCAAGGTGTTAGATCTGAAT
GACAACAAACCAGTCTTTGAAACATCGAGCTATGAAACGATCATAATGGAGGGGATGCCTGTCG
GCACCAAGCTTGCCCAGGTGAGAGCCATAGACACGGACTGGGGAGCCAATGGACAGGTCACTTA
CTCCCTACACTCAGATTCCCATCTTGAAAAGGTAATGGAGGCATTCAATATAGACAGCAACACA
GGATGGATCAGTACACTGAAGGACCTGGACCATGAGACAGATCCCACCTTCTCCTTCTTTGTGG
TGGCTTCCGACCTCGGAGAGGCTTTCTCTCTCTCTTCCATGGCTCTGGTCTCGGTCAAGGTGAC
AGATATAAATGACAATGCACCAGTCTTTGCTCATGAGGTGTACCGAGGAAACGTGAAGGAGAGT
GACCCGCCGGGGGAGGTGGTAGCTGTTCTCAGCACATTGGACAAAGACACCTCCAACATAAATC
GCCAAGTGAGCTACCACATTACAGGAGGGAACCCCCGAGGACGGTTTGCCCTGGGCATGGTGCA
GAGTGAGTGGAAGGTCTATGTGAAGAGGCCTCTGGATCGAGAGGAACAAGACATTTACTTCCTC
AATATCACTGCCTCTGATGGACTCTTTGTCACACAGGCCATGGTAGAAGTGACTGTCAGTGACG
TAAATGACAACAGCCCAGTGTGTGATCAGGTTGCATACTCAGCATCACTTCCTGAAGACATTCC
GTCAAATAAAATCATCCTGAAGGTCAGTGCCAAGGATGCGGACATTGGATCCAATGGAGATATA
CGATACTCACTCTATGGTTCTGGAAACAGTGACTTTTTTCTAGATCCAGAAAGTGGTGAGTTAA
AAACCTTGGCCTTGTTGGACCGGGAGAGGGTCCCAGTGTACAACCTGATTGCCAGGGCCACTGA
TGGAGGTGGCCGCTTCTGCAGCTCCACTGTCCTCCTGCTCCTAGAAGATGTGAATGATAACCCC
CCTGTGTTTTCCTCCAACCACTACACTGCATGTGTCTATGAGAACACGGCCACTAAGGCTCTGC
TGACCAGAGTGCAAGCGGTGGACCCTGATGTTGGCATCAACAGGAAGGTTGTGTATTCCCTGGA
GGACTCAGCCAGTGGAGTCTTCTCCATCGACAGCTCCTCTGGTGTCATCGTTCTGGAACAGCCT
CTAGATCGAGAGCAGCAGTCATCCTATAACATCAGTGTGCGGGCCACAGACCAGAGTCCTGGAC
AGTCCCTCTCCTCTCTCACCTCGGTCACCATCACTGTCCTGGACATTAATGACAACCCCCCTGT
ATTTGAGAGGAGGGATTACCTGGTAACAGTGCCTGAGGACACTTCCCTTGGCACCCAAGTCCTG
TCTGTTTTTGCCACCAGCAAAGATATTGGTACCAATGCTGAGATAACTTACCTCATCCGGTCTG
GGAATGAACAAGGGAAATTTAGGATCAACCCAAAGACAGGGGGTATTTCTGTCTTGGAAGCGCT
GGACTATGAAATGTGCAAAAGATTTTACCTTGTGGTGGAAGCTAAAGACGGAGGCACCCCAGCC
CTCAGCACGGCAGCCACTGTCAGCATCGACCTCACAGATGTGAATGATAACCCTCCTCGGTTCA
GCCAAGATGTCTACAGTGCTGTCATCAGTGAGGATGCCTTAGAGGGGGACTCTGTCATTCTGCT
GATAGCAGAAGATGTGGATAGCAAGCCTAATGGACAGATTCGGTTTTCCATCGTGGGTGGAGAT
AGGGACAATGAATTTGCTGTCGATCCCATCTTGGGACTTGTGAAAGTTAAGAAGAAACTGGACC
GGGAGCGGGTGTCAGGATACTCCCTGCTCATCCAGGCAGTAGATAGTGGCATTCCTGCAATGTC
CTCAACGACAACTGTCAACATTGATATTTCTGATGTGAACGACAACAGTCCAGTGTTTACACCT
GCCAACTACACTGCCGTGATCCAGGAAAATAAGCCAGTGGGTACCAGCATCTTACAGCTTGTGG
TGACAGACAGAGACTCCTTTCACAATGGGCCTCCCTTTTCCTTCTCTATTTTGTCGGGAAATGA
AGATGAGGAGTTCATGCTGGACTCCCATGGGATCCTTCGGTCAGCAGTGGTCTTCCGGCACATG
GAGTCCCCAGAATACCTACTGTGCATCCAGGCAAAAGACTCAGGAAAACCACAGCAAGTTTCCC
ACACCTACATCCGTGTCCGGGTCATTGAGGAAAGCACCCACAAACCCACAGCCATCCCTCTGGA
AATTTTCATCGTCACCATGGAGGATGATTTTCCTGGTGGGGTCATTGGAAAAATCCACGCCACG
GATCAGGACATGTATGATGTGCTGACGTTTGCCCTGAAATCAGAACAGAAGAGTCTGTTCAAAG
TGAACAGTCACGATGGAAAAATCATTGCTCTGGGAGGCCTGGACAGTGGGAAGTATGTCCTGAA
TGTGTCTGTGAGTGATGGCCGCTTCCAAGTGCCCATCGATGTCGTTGTACACGTGGAGCAACTG
GTGCACGAGATGCTGCAAAACACCGTCACAATTCGCTTTGAGAATGTGTCTCCCGAGGACTTTG
TGGGGCTGCACATGCACGGCTTCCGGCGCATTCTGCGGAATGCGGTCCTCACCCAGAAGCAGGA
CAGCCTGCGCATCATCAGCATCCAACCCGTGGTGGGCACTAACCAGCTGGACATGCTGTTTGCT
GTGGAGATGCACAGCAGCGAGTTCTACAAACCAGCCTACCTGATCCAGAAGTTGTCCAACGCCA
GGAGACACCTGGAAAACGTCATGCATATAGCAGCCATCTTGGAAAAGAACTGCTCGGGATTGGA
CTGTCAGGAGCAGCACTGTGAGCAGGGCTTGTCACTGGATTCCCACGCACTCATGACCTACAGC
ACGGCTCGCATCAGCTTCGTGTGTCCACGTTTCTATAGGAACGTGCGCTGCACATGTAATGGAG
GAGTGTGTCCCGGGTCCAACGATCCTTGTGTGGAAAAACCGTGTCCAGAAGACATGCAATGTGT
GGGTTATGAGGCCAGCAGGAGACCATTTCTCTGCCAGTGTCCACCAGGGAAACTCGGAGAGTGC
TCAGGGCACACTTCTCTCAGCTTTGCTGGCAACAGTTACATCAAGTATCGGCTTTCTGAAAACA
GCCGAGAAGAGGACTTCAAGCTAGCGCTGCGTCTGAGAACCTTGCAGAGCAATGGTATCATAAT
GTACACCCGGGCCAACCCCTGCATGATTCTGAAGATTGTGGAAGGCAAGCTGTGGTTCCAGCTG
GACTGTGGCAGCGGCCCTGGGATCCTGGGCATCTCCAGCCGCGCTGTCAATGATGGGAGCTGGC
ACTCAGTCTTCTTGGAGCTCAATCGCAATTTCACCAGCCTGTCCCTGGACGACAGCTACGTGGA
GCGTCGTAGGGCGCCCCTGTACTTCCAGACCTTAAGCACCGACAGTGCCATCTTCTTTGGAGCG
CTGGTGCAGGCAGATAATATTCGCAGCCTGACGGACACACGTGTTACGCAGGTCCTCGGTGGCT
TCCAGGGTTGCCTGGACTCCGTGGTGCTCAATCACAACGAGCTACCCCTCCAAAACAAGCGCAG
CAGCTTCGCGGAGGTCGTGGGTCTCACGGAGCTGAAGTTGGGCTGTGTGCTCTACCCCGACGCG
TGCCAACGCAGCCCATGTCTGCATGGGGGCAGCTGCAGCGGTCTGCCCTCTGGCGGCTATCAGT
GTTCCTGTCTCTCGCAGTTCACGGGGACAAACTGTGAATCAGAGATCACAGCCTGCTTCCCTAA
CCCTTGCCGGAATGGAGGATCCTGTGACCCCATAGGAAACACCTTCATCTGCAGCTGTAAAGCC
GGCCTCACAGGTGTCACGTGCGAGGATGACGTTGACGAGTGTGAGCGAGAAGAGTGTGAGAACG
GGGGTTCCTGTGTCAACCTGTTCGGCTCCTTCTTCTGCAACTGCACGCCAGGCTATGTAGGCCA
GTACTGTGGCTTGCGCCCTGTGGTTGTGCCCAACATCCAAGCTGGCCACTCATACGTGGGAAAG
GAGGAGCTGATAGGCATCGCTGTGGTCCTCTTTGTCATCTTCACCCTGATTGTGCTCTTCATCG
TCTTTCGCAAGAAGGTCTTTCGAAAGAACTACTCTCGCAACAACATCACATTAGTGCAGGACCC
GGCCACAGCTGCGTTGCTGCATAAGAGCAATGGCATCCCCTTCCGCAGCCTGCGTGCAGGAGAT
GGGCGCAACGTGTACCAGGAGGTGGGGCCCCCGCAGGTGCCGGTGCGCCCCATGGCCTACACAC
CCTGCTTCCAGAGCGACTCAAGGAGCAACCTGGACAAAGGCCTGGACGCGCTGGGTGGGGAACC
ACAGGAGCTGAGCACATTTCACCCGGAATCGCCACGCATCCTCACAGCAAGGCGAGGTGTGGTG
GTGTGCAGCGTGGCTCCCAACCTCCCAGCTGTGTCACCCTGCCGCTCAGACTGCGACTCCATCC
GGAAGAATGGCTGGGACACAGGATCTGAAAACAAAGGGGCTGAAGACACAGGAGAAGTGACCTG
CTTCGCAAACAGTAATAAAGGCAGCAACTCAGAAGTTCAGTCCCTCAACTCCTTCCAGTCGGAT
TCTGGCGATGACAACGCCTATCACTGGGACACCTCTGACTGGATGCCTGGGGCACGGCTGTCTG
ATATTGAAGAAATGCCCAACTATGAGAGCCAAGATGGAGGGGCAGTACACCAGGGTAGCACAAG
AGAGCTGGAGAGTGACTACTACCTAGGCGGATATGACATCGATAGTGAATACCCGCCACCTCAT
GAAGAAGAGTTCCTGAGTCAGGATCAGCTACCCCCACCACTGCCAGAGGACTTCCCTGAACAGT
ATGAGGCCCTGCCTCCCTCCCAGCCCACCTCACTCACTGGCACCATGAGCCCAGACTGCAGGAG
AAGGCCCCGGTTTCACCCCAGCCAGTACCTTCCTCCTCACCCACTCCCTGGTGAAACAGATTTG
GGGGGCCCACCCTCCAGCTGTGATTTTAGTACTTTTGCAGTAAGCATGAACCAGGGCACAGAGG
TCATGGCCCCCACAGACAGTGTGTCTCTGTCCTTGCACAATTCCAGAGGCACCTCATCCTCAGA
TATGTCAGCCCGCTGTGGCTTTGATGATTCTGAGGTAGCCATGAGTGACTACGAGAGCGCGGGC
GAGCTCAGCCTCACCAACCTTCACATTCCCTTTGTGGAAACGCAGCACCAGACCCAGGTGTAGA
GGACACCCGTAGGTGCTGTGCCCAGACTATTACAGCATGGAAGAAAAGAAGCTGTACTTGTGTT
GGATGGAGAGAAGTCTGTGGAAATGTGGATTTTCTATGAGGAACGCCTTCGCAAGTCTTACTGT
CACAAGCAAGCTGGACTCTCAGAGTGACACGGAGAGGCTCAGAACTGTTTCAGGGGGACAGGGG
AGCTGACAGACTTTGTTGTGGGTGTTGGTGGCTTGGAATGCAAAGGAGAAGAAATGAGTTTACT
AAGTTAAATGGGAGATCCTGAATGGCATTGTGTATTATTGTGACCCGGAAAGTACGGAACCAGA
GATCCTTACAGTATTTAGCCTGCCACCATCAGAGGGGCATCATTGCATGTTTTTTGGGGCCAAG
GAAGTGAGAATAGTAGATATGTCTGTCAGAAAAGTTAGTGTTGTAGATGAAGGAGAAGTGAGAG
CTAAGCACGAGTGTGGGCGGAAGCCTTAGAAGCCAACACTGTTGTTTGAAAGAGCTGCCTAATT
TTCAGCTATAAAATTAGGTTTGAGTAAC

hide sequence

RefSeq Acc Id:

XM_039080778 ⟹ XP_038936706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,555,679 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,274,336 (-)	NCBI

RefSeq Acc Id:

XM_039080780 ⟹ XP_038936708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,555,678 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,274,336 (-)	NCBI

RefSeq Acc Id:

XM_039080781 ⟹ XP_038936709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,555,678 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,274,335 (-)	NCBI

RefSeq Acc Id:

XM_039080782 ⟹ XP_038936710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,438,953 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,157,608 (-)	NCBI

RefSeq Acc Id:

XM_039080783 ⟹ XP_038936711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,972,840 - 21,314,163 (-)	NCBI
mRatBN7.2	8	12,691,470 - 13,032,786 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001400401	(Get FASTA)	NCBI Sequence Viewer
	NP_612553	(Get FASTA)	NCBI Sequence Viewer
	XP_038936706	(Get FASTA)	NCBI Sequence Viewer
	XP_038936708	(Get FASTA)	NCBI Sequence Viewer
	XP_038936709	(Get FASTA)	NCBI Sequence Viewer
	XP_038936710	(Get FASTA)	NCBI Sequence Viewer
	XP_038936711	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB86869	(Get FASTA)	NCBI Sequence Viewer
	EDL78427	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015976
	ENSRNOP00000089392
	ENSRNOP00000096648
	ENSRNOP00000112730
GenBank Protein	Q8R508	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_612553 ⟸ NM_138544
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q8R508 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGVTMRHCIDTRPPSCLIFLLLKLCATVSQGLPGTGPLGFHFTHALYNATVYENSAARTYVNSQ SRMGITLIDLSWDIKYRIVSGDEEGFFKAEEVIIADFCFLRIRTKGGNSAILNREIQDNYLLII KGSVRGEDLEAWTKVNIQVLDMNDLRPLFSPTTYSVTIAESTPLRTSVAQVTATDADIGSNGEF YYYFKNKVDLFSVHPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAKLYVHIE RINEHAPIIHVVTHTPFSLDKEPTYAVVTVDDLDEGANGEIESVSIVDGDPLEQFFLAKEGKWM NEYKVKERRQVDWESFSYGYNLTIQAKDKGSPQKFSELKTVHIANPRRDSTPIKFEKDVYDISI SEFSPPGVMVAIVKVNPEPLDVEYKLLPGKDAEYFKINPRSGLIVTAQPLNTVKKEVYKLEVSD KEGDAKAQVTIGIEDANDHTPEFQETLYETFVNESVPVGTNVLTVSASDKDKGENGYITYSIAS LNLLPFAINQFTGVISTTEELDFESSPETYRFIVRASDWGSPYRHESEVNVTIRVGNVNDNSPL FEKVACQGVISYDFPVGGHITAISAIDIDELELVKYKIISGNELGFFYLNPDSGVLQLKKSLMN SGIKNGNFALRITATDGENFADPMAINISVLHGKVSSKSFSCRETRVAQKLAEKLLIKAKANGK LNQEDGFLDFYSINRQGPHFDKSFPSDVAVKENMPVGTNILKIKAYDADSGFNGKVLFTISDGN TDSCFNIDMETGQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNSPVFLQ DSYSVSILESSSIGTEIIQVEARDKDLGSNGEVTYSVLTDTHQFVINSSTGIVYIADQLDRESK ANYSLKIEARDKAESGQQLFSVVTLKIFLDDVNDCSPAFIPSSYSVKVLEDLPVGTVIAWLETQ DPDLGLGGQVRYSLVNDYNGRFEIDKASGAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSIS FVEVEVVDVNENLHTPYFPDFAVVGSVKENSRIGTSVLQVTAHDEDSGRDGEIQYSIRDGSGLG RFNIDDESGVITAADILDRETTASYWLTVYATDRGVVPLYSTIEVYIEVEDVNDNAPLTSEPIY YPVVMENSPKDVSVIQIQAEDPDSGSNEKLTYRITSGNPQNFFAINIKTGLITTTSRKLDREQQ AEHFLEVTVTDGGSSPKQSTIWVVVQVLDENDNKPQFPEKVYQIKLPERDRKKRGEPIYRAFAF DRDEGPNAEISYSIVDGNDDGKFFIDPKTGMVSSRKQFTAGSYDILTIKAVDNGRPQKSSTARL HIEWIKKPPPSPIPLTFDEPFYNFTIMESDKVTEIVGVVSVQPANTPLWFDIIGGNFDSSFDAE KGVGTIVIAKPLDAEQRSVYNMSVEVTDGTNVAVTQVFITVLDNNDNGPEFSQPHYDVTISEDV PPDTEILQIEATDRDEKHKLSYTIHSSIDAISMRKFRIDPSTGVLYTAERLDHEAQDKHILNIM VRDQEFPYRRNLARVIVNVEDANDHSPYFTNPLYEASVFESAALGSVVLQVTALDKDKGENAEL IYSIEAGNTGNTFKIEPVLGIITISKEPDMTAMGQFVLSVKVTDQGSPPMSATAIVRISISMSD NSHPKFTHKDYQAEVNENVDIGTSVILISAISQSTLIYEVKDGNINGVFTINPYSGVITTRRAL DYEHTSSYQLIIQATNMAGMASNATVSVQVVDENDNPPVFLFSQYSGSLSEAAPINSLVRSLDN SPLVIRATDADSNQNALLVYQIVESTAKKFFTVDSSTGAIRTIANLDHEVIAHFHFHVHVRDSG NPQLTAESPVEVNIEVTDVNDNPPVFTQAVFETVLLLPTYVGVEVLKVSATDPDSEVPPELTYS LMEGSVDHFLMDPNTGVLTIKNNNLSKDHYMLIVRVSDGKFYSTAMVTIMVKEAMDSGLHFTQS FYSTSISENSTNITKVAIVNAVGNRLNEPLKYSILNPGNKFKIKSTSGVIQTTGVPFDREEQEL YELVVEASRELDHLRVARVVVRVNIEDVNDNSPVFVGLPYYAAVQVDAEPGTLIYRVTAIDKDK GANGEVTYVLQDDYGHFEINPNSGNVILKEAFNSDLSNIDYGVTILAKDGGTPSLSTFVELPIT IVNKAMPVFDKPFYTASINEDISINTPILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLK VISPLDYEVMSVYKLTVRASDALTGARAEVTVDLLVDDVNDNPPVFDQPTYNTTLSESSLIGTP VLQLVSTDADSGNNNLVHYQIVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHCTLKVTATDN GFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYVSELAPRGHFVTCVQASDADSSDFDRLEYSI LSGNDRTSFLMDSKSGVLTLSSHRKQRMEPLYSLNVSVSDGLFTSTAQVHIRVLGANLYSPAFS QSTYVAEVRENAASGTKVIHVRATDGDPGTYGQVSYSIINDFAKDRFLIDSNGQIITTERLDRE NPLEGDISIYLRALDGGGRTTFCTVRVIVVDENDNAPQFMTLEYRASVRADVGRGHLVTQVQAL DPDDGANSRITYSLYSEASVSVADLLEIDPDNGWMVTKGNFNQLRNTVLSFFVKAVDGGIPVRH SLIPVYIHVLPPETFLPSFTQSQYSFTIAEDTSIGSTIDTLRILPNQSVRFSTVNGERPENNKE NVFIIEQETGAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETS SYETIIMEGMPVGTKLAQVRAIDTDWGANGQVTYSLHSDSHLEKVMEAFNIDSNTGWISTLKDL DHETDPTFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGNVKESDPPGEVVAV LSTLDKDTSNINRQVSYHITGGNPRGRFALGMVQSEWKVYVKRPLDREEQDIYFLNITASDGLF VTQAMVEVTVSDVNDNSPVCDQVAYSASLPEDIPSNKIILKVSAKDADIGSNGDIRYSLYGSGN SDFFLDPESGELKTLALLDRERVPVYNLIARATDGGGRFCSSTVLLLLEDVNDNPPVFSSNHYT ACVYENTATKALLTRVQAVDPDVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSY NISVRATDQSPGQSLSSLTSVTITVLDINDNPPVFERRDYLVTVPEDTSLGTQVLSVFATSKDI GTNAEITYLIRSGNEQGKFRINPKTGGISVLEALDYEMCKRFYLVVEAKDGGTPALSTAATVSI DLTDVNDNPPRFSQDVYSAVISEDALEGDSVILLIAEDVDSKPNGQIRFSIVGGDRDNEFAVDP ILGLVKVKKKLDRERVSGYSLLIQAVDSGIPAMSSTTTVNIDISDVNDNSPVFTPANYTAVIQE NKPVGTSILQLVVTDRDSFHNGPPFSFSILSGNEDEEFMLDSHGILRSAVVFRHMESPEYLLCI QAKDSGKPQQVSHTYIRVRVIEESTHKPTAIPLEIFIVTMEDDFPGGVIGKIHATDQDMYDVLT FALKSEQKSLFKVNSHDGKIIALGGLDSGKYVLNVSVSDGRFQVPIDVVVHVEQLVHEMLQNTV TIRFENVSPEDFVGLHMHGFRRILRNAVLTQKQDSLRIISIQPVVGTNQLDMLFAVEMHSSEFY KPAYLIQKLSNARRHLENVMHIAAILEKNCSGLDCQEQHCEQGLSLDSHALMTYSTARISFVCP RFYRNVRCTCNGGVCPGSNDPCVEKPCPEDMQCVGYEASRRPFLCQCPPGKLGECSGHTSLSFA GNSYIKYRLSENSREEDFKLALRLRTLQSNGIIMYTRANPCMILKIVEGKLWFQLDCGSGPGIL GISSRAVNDGSWHSVFLELNRNFTSLSLDDSYVERRRAPLYFQTLSTDSAIFFGALVQADNIRS LTDTRVTQVLGGFQGCLDSVVLNHNELPLQNKRSSFAEVVGLTELKLGCVLYPDACQRSPCLHG GSCSGLPSGGYQCSCLSQFTGTNCESEITACFPNPCRNGGSCDPIGNTFICSCKAGLTGVTCED DVDECEREECENGGSCVNLFGSFFCNCTPGYVGQYCGLRPVVVPNIQAGHSYVGKEELIGIAVV LFVIFTLIVLFIVFRKKVFRKNYSRNNITLVQDPATAALLHKSNGIPFRSLRAGDGRNVYQEVG PPQVPVRPMAYTPCFQSDSRSNLDKGLDALGGEPQELSTFHPESPRILTARRGVVVCSVAPNLP AVSPCRSDCDSIRKNGWDTGSENKGAEDTGEVTCFANSNKGSNSEVQSLNSFQSDSGDDNAYHW DTSDWMPGARLSDIEEMPNYESQDGGAVHQGSTRELESDYYLGGYDIDSEYPPPHEEEFLSQDQ LPPPLPEDFPEQYEALPPSQPTSLTGTMSPDCRRRPRFHPSQYLPPHPLPGETDLGGPPSSCDF STFAVSMNQGTEVMAPTDSVSLSLHNSRGTSSSDMSARCGFDDSEVAMSDYESAGELSLTNLHI PFVETQHQTQV hide sequence

Ensembl Acc Id:

ENSRNOP00000015976 ⟸ ENSRNOT00000015977

RefSeq Acc Id:	XP_038936708 ⟸ XM_039080780
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038936706 ⟸ XM_039080778
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AQQ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936709 ⟸ XM_039080781
- Peptide Label:	isoform X3
- UniProtKB:	F1LMF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936710 ⟸ XM_039080782
- Peptide Label:	isoform X3
- UniProtKB:	F1LMF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936711 ⟸ XM_039080783
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000096648 ⟸ ENSRNOT00000109404

Ensembl Acc Id:

ENSRNOP00000089392 ⟸ ENSRNOT00000118830

RefSeq Acc Id:	NP_001400401 ⟸ NM_001413472
- Peptide Label:	isoform 1 precursor
- UniProtKB:	A0A8I6ABM1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112730 ⟸ ENSRNOT00000173686

Ensembl Acc Id:

ENSRNOP00000112789 ⟸ ENSRNOT00000173498

Protein Domains

Cadherin EGF-like Laminin G Laminin G-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620657	AgrOrtholog
BioCyc Gene	G2FUF-31624	BioCyc
Ensembl Genes	ENSRNOG00000011585	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000015977	ENTREZGENE
	ENSRNOT00000109404	ENTREZGENE
	ENSRNOT00000118830	ENTREZGENE
	ENSRNOT00000173686	ENTREZGENE
Gene3D-CATH	2.60.120.200	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
	Laminin	UniProtKB/Swiss-Prot
InterPro	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	ConA-like_dom_sf	UniProtKB/Swiss-Prot
	EGF-like_Ca-bd_dom	UniProtKB/Swiss-Prot
	EGF-like_CS	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/Swiss-Prot
	EGF_Ca-bd_CS	UniProtKB/Swiss-Prot
	Laminin_G	UniProtKB/Swiss-Prot
NCBI Gene	191571	ENTREZGENE
PANTHER	FAT ATYPICAL CADHERIN-RELATED	UniProtKB/Swiss-Prot
	PROTOCADHERIN-23	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	EGF	UniProtKB/Swiss-Prot
	hEGF	UniProtKB/Swiss-Prot
	Laminin_G_2	UniProtKB/Swiss-Prot
PhenoGen	Fat3	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	ASX_HYDROXYL	UniProtKB/Swiss-Prot
	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
	EGF_1	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	EGF_3	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
	LAM_G_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011585	RatGTEx
SMART	EGF	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
	LamG	UniProtKB/Swiss-Prot
	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot
	SSF49313	UniProtKB/Swiss-Prot
	SSF49899	UniProtKB/Swiss-Prot
UniProt	A0A8I6ABM1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQQ4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LP38_RAT	UniProtKB/TrEMBL
	A0ABK0M117_RAT	UniProtKB/TrEMBL
	A6JND8_RAT	UniProtKB/TrEMBL
	F1LMF4	ENTREZGENE, UniProtKB/TrEMBL
	FAT3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-05	Fat3	FAT atypical cadherin 3	Fat3	FAT tumor suppressor homolog 3 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Fat3	FAT tumor suppressor homolog 3 (Drosophila)		Fta3 protein	Name updated	1299863	APPROVED
2002-08-07	Fat3	Fta3 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains 34 cadherin domains, 4 epidermal growth factor (EGF)-like motifs, a laminin A-G motif and a cytoplasmic domain	625453
gene_expression	expressed in fetal brain and spinal cord with peak expression at day E15	625453
gene_process	may play a role in axon fasciculation	625453
gene_product	4555 amino acids, 500 kDa protein	625453

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD