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Gene: Fat2 (FAT atypical cadherin 2) Rattus norvegicus

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Symbol:

Fat2

Name:

FAT atypical cadherin 2

RGD ID:

620656

Description:

Predicted to enable calcium ion binding activity. Involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi apparatus; anchoring junction; and membrane. Predicted to be active in adherens junction and plasma membrane. Human ortholog(s) of this gene implicated in spinocerebellar ataxia 45. Orthologous to human FAT2 (FAT atypical cadherin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

FAT tumor suppressor homolog 2; FAT tumor suppressor homolog 2 (Drosophila); Fath2; Megf1; multiple EGF-like domains protein 1; multiple epidermal growth factor-like domains 1; multiple epidermal growth factor-like domains protein 1; protocadherin Fat 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAT2 (FAT atypical cadherin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fat2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fat2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAT2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAT2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fat2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAT2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAT2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fat2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fat2 (FAT atypical cadherin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FAT2 (FAT atypical cadherin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fat2 (FAT atypical cadherin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fat2 (FAT atypical cadherin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdh-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdh-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kug	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fat2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,864,765 - 39,957,027 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,864,766 - 39,956,902 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,364,072 - 39,456,324 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,364,073 - 39,456,216 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	44,051,017 - 44,140,369 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,541,102 - 43,630,456 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,044,810 - 39,134,160 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,583,025 - 40,682,598 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,584,403 - 40,657,861 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,421,638 - 40,513,778 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,648,951 - 40,749,409 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,701,431 - 38,790,574 (-)	NCBI		Celera
RGSC_v3.1	10	40,662,573 - 40,763,032 (-)	NCBI
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

esophagus squamous cell carcinoma (ISO)

spastic ataxia (ISO)

spinocerebellar ataxia 45 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

cantharidin (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chrysene (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

DDE (ISO)

diazinon (EXP)

diiodine (ISO)

disodium selenite (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

hydrogen sulfide (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methapyrilene (ISO)

N-ethyl-N-nitrosourea (ISO)

nicotine (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (EXP)

progesterone (ISO)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-nitrosoglutathione (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

tetrachloroethene (ISO)

trametinib (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

cell-cell adhesion (IEA)

cell-cell adhesion mediated by cadherin (IBA)

cell-substrate adhesion (IEA,ISO,ISS)

epithelial cell migration (IEA,ISO,ISS)

homophilic cell-cell adhesion (IDA,IEA)

Cellular Component

adherens junction (IBA,IEA,ISO,ISS)

anchoring junction (IEA)

Golgi apparatus (IEA)

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

calcium ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Identification of high-molecular-weight proteins with multiple EGF-like motifs by motif-trap screening.	Nakayama M, etal., Genomics 1998 Jul 1;51(1):27-34.
4.	MEGF1/fat2 proteins containing extraordinarily large extracellular domains are localized to thin parallel fibers of cerebellar granule cells.	Nakayama M, etal., Mol Cell Neurosci. 2002 Aug;20(4):563-78.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17110338	PMID:17900869	PMID:19199708	PMID:29053796

Genomics

Comparative Map Data

Fat2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,864,765 - 39,957,027 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,864,766 - 39,956,902 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,364,072 - 39,456,324 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,364,073 - 39,456,216 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	44,051,017 - 44,140,369 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,541,102 - 43,630,456 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,044,810 - 39,134,160 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,583,025 - 40,682,598 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,584,403 - 40,657,861 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,421,638 - 40,513,778 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,648,951 - 40,749,409 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,701,431 - 38,790,574 (-)	NCBI		Celera
RGSC_v3.1	10	40,662,573 - 40,763,032 (-)	NCBI
Cytogenetic Map	10	q22	NCBI

FAT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,504,092 - 151,594,819 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,504,092 - 151,591,331 (-)	Ensembl			hg38	GRCh38
GRCh37	5	150,883,653 - 150,970,892 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	150,863,847 - 150,928,698 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	150,863,846 - 150,928,698	NCBI
Celera	5	146,965,062 - 147,029,916 (-)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	146,029,050 - 146,093,922 (-)	NCBI		HuRef
CHM1_1	5	150,316,083 - 150,380,950 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	152,043,070 - 152,133,808 (-)	NCBI		T2T-CHM13v2.0

Fat2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	55,141,435 - 55,228,331 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	55,141,435 - 55,227,390 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	55,250,609 - 55,337,505 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	55,250,609 - 55,336,564 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	55,064,112 - 55,125,759 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	55,094,032 - 55,155,669 (-)	NCBI		MGSCv36	mm8
Celera	11	59,839,223 - 59,900,066 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.5	NCBI

Fat2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	5,941,800 - 6,033,878 (-)	Ensembl
ChiLan1.0	NW_004955408	5,944,236 - 6,033,776 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	146,732,401 - 146,819,774 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	144,871,945 - 144,959,319 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	146,927,558 - 147,014,920 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	152,930,937 - 153,018,231 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	152,932,400 - 152,995,784 (-)	Ensembl			panPan2	panpan1.1

FAT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	57,743,007 - 57,823,740 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	57,742,651 - 57,823,740 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,562,217 - 57,642,911 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	58,186,256 - 58,264,746 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	58,185,984 - 58,263,273 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	58,001,758 - 58,082,455 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	58,099,856 - 58,180,790 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	58,604,015 - 58,684,660 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	112,682,713 - 112,751,257 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	11,132,059 - 11,199,153 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	11,132,059 - 11,200,544 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,469,847 - 71,530,501 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	71,448,491 - 71,531,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	77,676,229 - 77,761,243 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	54,064,687 - 54,152,696 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	54,064,393 - 54,152,416 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	23,577,450 - 23,643,131 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fat2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	37,433,349 - 37,520,756 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	37,427,330 - 37,520,756 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fat2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	37,668,238 - 37,734,001 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fat2
634 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	426
Count of miRNA genes:	238
Interacting mature miRNAs:	286
Transcripts:	ENSRNOT00000058665
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Got61

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,404,991 - 39,405,197 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,623,681 - 40,623,886	NCBI	Rnor6.0
Rnor_5.0	10	40,461,388 - 40,461,593	UniSTS	Rnor5.0
RGSC_v3.4	10	40,689,311 - 40,689,517	RGD	RGSC3.4
RGSC_v3.4	10	40,689,312 - 40,689,517	UniSTS	RGSC3.4
Celera	10	38,741,234 - 38,741,433	UniSTS
RGSC_v3.1	10	40,702,935 - 40,703,140	RGD
RH 3.4 Map	10	409.5	UniSTS
RH 3.4 Map	10	409.5	RGD
RH 2.0 Map	10	442.8	RGD
Cytogenetic Map	10	q22	UniSTS

AI409913

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,364,116 - 39,364,268 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,583,069 - 40,583,220	NCBI	Rnor6.0
Rnor_5.0	10	40,421,682 - 40,421,833	UniSTS	Rnor5.0
RGSC_v3.4	10	40,648,995 - 40,649,146	UniSTS	RGSC3.4
Celera	10	38,701,475 - 38,701,626	UniSTS
RH 3.4 Map	10	411.4	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	7	20	102	45	50	20	46	20	6	204	82	9	81	81	90	30	1	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB011527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000058665 ⟹ ENSRNOP00000055459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,864,766 - 39,956,902 (-)	Ensembl
mRatBN7.2 Ensembl	10	39,364,073 - 39,456,216 (-)	Ensembl
Rnor_6.0 Ensembl	10	40,584,403 - 40,657,861 (-)	Ensembl

RefSeq Acc Id:

NM_022954 ⟹ NP_075243

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,864,766 - 39,956,902 (-)	NCBI
mRatBN7.2	10	39,364,073 - 39,456,216 (-)	NCBI
Rnor_6.0	10	40,583,025 - 40,682,598 (-)	NCBI
Rnor_5.0	10	40,421,638 - 40,513,778 (-)	NCBI
RGSC_v3.4	10	40,648,951 - 40,749,409 (-)	RGD
Celera	10	38,701,431 - 38,790,574 (-)	RGD

Sequence:

show sequence

GTTGGCTCCTGCTCCTCCGTCCTTCCCTCTGGAGCCTTCAGCTAAGCCCTGGGGACAGGAGCCC
CAGCCCAGCATCCACTCCTTCCAGGCACCCTCTCCACCTGAGGAGGACAGGAGTTTTTCATCAT
GACTCTTGTCCTGCTGGGTCTAGCCATCCTGTTGCTCCACCGTGCAGCCTGTGAGAAGTCCCTA
GAAGAAACCATCCCCCCCTTGTCTTGGCGCTTCACGCATTCCTTGTACAACGCCACCATCTATG
AAAACTCTGCTCCCAAGACCTATGTGGAGAGCCCAGTGAAGATGGGCATGTATCTGGCAGAGCC
CCACTGGGTGGTGAAATACCGGATCATCTCTGGCGATGCAGCCGGAGTATTTAAGACGGAGGAG
CATGTGGTAGGCAACTTCTGCTTTCTGAGAATAAGGACCAAGAGCAGCAACACGGCACTTCTCA
ACAGGGAGGTGCGAGACAGCTACACACTCATCGTGCAAGCCTCAGACAAGAGCCTGGAGTTCGA
AGCGCTGACCCAAGTGGTGGTCCACATCCTGGATCAGAATGACCTGAAGCCCCTCTTTTCCCCA
CCTTCCTACAGAGTCACCATCTCGGAGGACAGGCCCCTCAAGAGCCCCATCTGCAAAGTGACTG
CCACAGATGCCGATCTGGGCCAGAACGCTGAGTTCTATTATGCCTTTAATGCCAGGTCAGAGGT
CTTTGCCATCCACCCCACCAGTGGGGTGGTCACTGTGGCTGGAAAGCTGAATGTCACACGGCGA
GGCAAGTATGAGCTCCAGGTGCTGGCTGTGGACCGCATGAGAAAAATCTCGGAGGGCAATGGAT
TTGGCAACTTGGCTTCGTTGGTAATTCGTGTGGAGCCTGTGCACAGGAAGCCCCCAGCTATCAA
CTTAGTGGTCCTGAATCCACCAGAAGGTGATGAAGGTGACATCTATGCCATCGTCACGGTGGAC
ACAAACGGTTCAGGAGCTGAAGTAGATTCCCTGGAAGTGGTTGGTGGTGACCCTGGAAAGTACT
TCAAGGTCCTCAGGTCCTATGCCCAAGGCAATGAGTTCAATTTGGTGGCAGTCAGGGACATTAA
TTGGGCAGAACACCCTCATGGCTTCAACATCAGCCTCCAGACCCACAGTTGGAGCAGATTTCCA
CCCCACTCCATCATCAGGGCCTTCCATCTCCCATCGTGGAAACTGGCCAACCTCAGATTCGAGA
AAGCAGTTTACAGAGTAAAGCTCAGTGAATTCTCTCCTCCTGGAAGCCGTGTGGCATTGGTGAA
GGTCACCACGGCTCTCCCCAATTTGCGTTATTCTCTAAAGCCATCCTCCAGGAACACAGCATTC
AAGTTGAATGCTCGAACAGGCCTGATCACCACCACGAAGCTTGTGGACTTCCATGAACAAAACC
AGTACCAGCTCCATGTCAAAACTTCCCTGGGTCAGGCCACCACCACCGTGATCATTGATATTGT
GGACTGTAACAACCATGCCCCAGTCTTCAACAGATCTTCCTATGAAGGGACCTTGGATGAGAAC
ATCCCCCCTGGCACCAGTGTTTTGACTGTGACAGCCACAGACCAGGACCATGGGGACAATGGAC
ACATCACCTATTCCATCGCTGGCCCCAAAGCTGTGCCGTTCTCTATCGACCCTCTCCTGGGGGT
CATCTCCACCACCAAACCCATGGACTATGAACTCATGAAGAGAATTTATACCTTTCGGGTCCGA
GCGTCAGACTGGGGGTCCCCTTTTCGCCAGGAGAAGGAGGTGTCCGTTTCTCTGAGGCTCAAGA
ATTTGAATGACAATCAGCCTATGTTTGAGGAAGTCAACTGTACTGTGTCCCTCCGTCAAGATGT
GCCGGTTGGGAAGTCGATAATGGCTGTGTCTGCAATAGACATGGACGAACTTCAGAACCTGAAA
TATGAAATTGTGTCTGGCAACGAACAAGACTATTTCCATCTCAACCATTTCTCGGGAGTGATAT
CTCTCAAACGCTCTTTTATGAACCTCACTGCTGTTCGGCCCACCATCTATTCTCTGAAGATTAC
AGCCTCTGATGGGAAGAACTATGCCTCTCCCACAACTCTGAAAGTCACTGTGGTGAAGGACCCT
CACTCCGAGGTCCCTGTACAGTGTGATAAAACAGGAGTGCTGACCCATATCACAAAAACCATCC
TCCAATCTGCTGGGCTTCAGAGCCAAGAGTTGGGTGAAGAGGAATTTACCTCCCTTAGCAACTA
TCAGATCAACCATCACTCTCCCCAGTTTGAGGACCACTTCCCCCAGTCCATTGACATTCTGGAG
CAGGTTCCCATCAACACCCCCTTGGCCCGCCTGGCAGCCACTGATCCAGATACTGGCTTTCATG
GCAAGCTGGTCTACGTGATTTCGGATGGCAATGAGGAAGGTTGTTTTGACATTGAGCTGGAGAC
GGGGCTGCTCATGGTGGCAGCAGCCTTGGACTATGAGACCACCAGCTTCTATGTCCTCAATGTG
ACCGTGTATGACCTGGGCACTCCTCCGAAGTCCTCCTGGAAGTTGTTGACAGTGACAGTGAAAG
ACTGGAATGATAACCCACCCAGGTTTCCTCCAGGTGGGTACCAACTCACCATTTCTGAGGACAC
GGAAGTTGGAACCACAATTGCAGAGCTAAAGACAGAGGACGCTGACTCAGAGGACAACAGGAGG
GTTCGCTACACCCTACTGACCCCCACAGAGAAGTTCTCTCTCCACCCATTTACTGGGGAGTTGG
TTGTCACAGGACACCTTGACAGGGAATCCGAGTCTCAGTACATACTCAAGGCAGAGGCCAGGGA
CCAGCCCACGAAGGGCCACCAGCTCTTCTCTGTCACCGACTTGATAGTCACGTTGGAGGATATC
AATGACAACCCTCCCCAATGTATCACAGAGCACAGGAGACTGAAGGTGCCCGAGGACATGCCCC
TCGGGACGGTCTTAACATTCCTAGATGCCTCTGACCCTGACCTGGGCCCTGCAGGTGAAGTGAA
ATATATCCTGGTGGAGGATGCCCACGGAACTTTCCAGGTGCACCCGATGACTGGAGCTCTGAGT
CTGGAAAAAGAGTTGGACTTTGAGAGACGGGCTGGATACAATCTGAGCTTTTGGGCCAGTGACA
GTGGGAAGCCTCTATCCCGCAGGACCCTCTGCCACGTAGAAGTGTTAGTCATGGATGTAAATGA
GAATCTCCACTCTCCCCACTTTTCCTCCTTTGTGTACCAGGGCCAGGTACAGGAGAACAGCCCT
GCAGGGACCCCGGTAATGGTAGTCACAGCTCAGGATGATGACAGTGGCTTGGATGGAGAGCTCC
AGTACTTCCTACGGGCTGGCACTGGCCTGGAAACCTTCAGCATCAACCAAGACACAGGAATGCT
CGAGACTCTGGCACCTCTGGACCGAGAATTCACACCCTACTACTGGTTGACAGTGTTGGCTGTG
GACAGAGGCTCCGTTCCCCTCTCTGCTGTCACTGAAGTCTACATTGAAGTTACAGATATCAATG
ACAACATTCCCTCGATGTCTAGACCTGTGTTCTACCCCTCTGTCCTGGAAGATGCCCCCTTGGG
TACCTCTGTGCTTCAGCTGGAGGCCTGGGACCCAGACTCCAGCTCCCAAGGGAAGCTGACCTTC
AACCTCACCAGTGGGAACCACTTGGGACATTTCATCGTTCACCCATTTACAGGTCTCCTGACCA
CTGCCAAGCAACTGGACCGAGAGAACAAGGATGAGTATGTCCTAGAGGTGACTGTGCAGGACAA
CGGGGACCCCTCACTAAGGTCCACCTCCAGGGTGGTGGTGTGCATCCTGGATGTCAATGACAAC
CCACCCATGTTCTCCCACAAGCTCTTTAACGTCCGCCTTTCAGAAAGACTAAGCCCCCTCTCCC
CGGAGCCTGTGTACAGGCTGGTAGCTTCAGATCCAGATGAAGGTCTCAACGGCAGCGTCACCTA
CAGCATTGAGGAGAGTGATGAGGAGAGCTTCAGGATCGACCCTGTCACAGGAGTTGTGTCTTCT
AGCAGCACCTTTGCAGCGGGAGAGTACAATATCCTAACGATCAAGGCAACAGACAGTGGGCAGC
CAGCACTCTCCACCAGTGTCCGGCTACACATCGAATGGATTCCCCAGCCTCGGCCATCCTCCAT
CCCACTGTCCTTTGATGAGTCATACTACAGCTTTACAGTCATGGAGACAGACCCCGTGAACCAC
ATGGTGGGAGTCATCAGTGTAGAGGGACGGCCTGGCCTCTTCTGGTTCCACATCTCAGATGGGG
ATAAGGACATGGACTTCGACATTGAGAAGACCACAGGGAGCATCGTGATAGCCAGACCTCTTGA
TACAAGGAGAAAGTCGAGCTATAACTTGACTGTGGAGGTGACAGATGGGTTCCACACCATTGCC
ACCCAGGTCCACATCTTTATGATTGCCAACATCAACCACCACCGGCCTCAGTTCCTGCAGGATC
ACTATGAAATCAGGGTCCCCCAAGACACGCTGCCTGGGGTTGAACTCCTCCGGGTCCAGGCCAC
AGATCAAGACCATGGCAAGGGCCTCATCTATACCATACTCAGCAGCCAGGACCCTGGAAGTGCC
AACCTCTTCCAGCTGGATCCAAGCAGTGGAGTGTTGGTGACAGTGGGGACATTGGAACTGCACT
CCGGGCCTTCTCAGCACATTCTGACAGTTATGGTGCGAGACCAAGAGATGCCCATCAAGAGGAA
CTTCGTGTGGGTGACCATTCATGTGGAGGATGGAAATCTCCACTCACCTCACTTCACTCAGCTT
CGTTATGAGGCAAATGTTCCTGACACCACCGCCCCTGGCACAGAGCTACTGCAGGTCCGAGCTG
TGGACGCTGACCGGGGAGCCAACGCTGAAATCCACTATTCCTTCCTAAAAGGGAACAGTGACGG
TTTCTTCAACATTGACTCCCTCCTGGGCATCATCACAGTCGCTCAGAGACTTTATCATGTCCAT
CTCACTAGGCATGCATTGACCGTGAAGGCAGAAGACCAAGGCTCCCCACGGCGGCATGACCTGG
CTCTGGTGGTCATTCATGTCCACCCCTCTGACAGCAGTGCTCCTGTGTTTTCAAAGGATGAGTA
TTTCATAGAGATCCCGGAATCGGTCCCCATCGGCTCGCCGATCCTCCTCCTCTCTGCTGGCAGC
TCCTCTGAAGTCACCTATGAGCTAAGAGAGGGGAACAAGGACAGTGTATTCTCCATGAACTCCT
ACTCTGGCCTCATCTCCACTCAGAAACGCTTAGACCATGAGAAAGTCCCGTCGTACCGACTGAG
AATCCGGGGTAGCAACATGGCCGGCGTGTTCACGGAGGTGGTGGCGCTGGTCTACATCATCGAT
GAGAATGACAATCCTCCTGCATTCGGGAAGCCAACTTTTCTGGGGCACATCAGTGAGGCGGCTC
CTCTGCACAGCCTGATCCTGGGGGAAGACAACAGCCCCTTAGTCGTCCGGGCCTCAGACAGTGA
CCGGGAAGCTAATTCCTTGTTGGTCTACAAAATCTTGGAACCGGAGGCCTTAAAGTTTTTCAAA
ATTGACCCCAGCATGGGAACCCTAACTACTACATCAGAGCTGGATTTTGAGGACACACCCTTGT
TCCAATTCAACATCTATGTCCATGACCAAGGGACACCCATCTTATTTGCACCCAGATCTGCCAA
GGTCATCATCCATGTCCGAGATGTGAATGACTCTCCTCCCAGGTTCTCAGAGCAGATATACGAA
GTGGCGGTGGTGGAACCCATCCACCCTGGCATGGGCCTCCTCACAGTGCAGGCTGAGGATAATG
ACTCGAGAGTCACCTATAGCATCAAAACCAGCAACGCTGATGAAGCTGTTACCATTCACCCCAC
CACAGGCCAAATATCTGTGGTTAATCCTGCTACTCTGAGGCTTTTTCAGAAGTTCAGTATTAGG
GCTTCTGATGGTCTGTATCATGATACCGCAGTGGTAAAAATATCTTTGACCCAAGTCCTCGATA
AAAGCTTACAGTTTGACCAGGATGTCTACAGGGCAAGAGTGACAGAGAATACACCACACAGAAA
GGCACTGGTAATTCTTGGTGTCCATGGAAACCATTTGAATGACACCCTTTCCTACTTCCTCTTG
AATGGCACAGACTTATTTCACATGATCGAGTCAGCAGGTGTGCTGCAAACCAGAGGAGGGACAT
TTGATCGGGAGCAGCAGGACACTCATGAAGTGGCAGTGGAAGTGAGGGATAACCGGGTCCCTCA
GCGGGTGGCTCAGGCTCTTGTCAGGGTCTCTGTGGAAGATGTCAATGACAACATCCCTGAGTTT
CAGCATCTGCCCTATTATACAGTCATCCAAGATGGCACTGAACCCGGGGACGTCCTCTTTCAGG
TATCTGCCACTGATAAGGATTTGGGAGCCAACGGGAGTGTCACATATGGGTTTGCAGAAGATTA
TGCCTATTTCCGGATTGACCCCTATGTTGGGGACATATCACTCAAGAAACCCTTTGATTATCAA
GCTTTGAATAAGTATCACCTCAGAGTCATTGCTCGAGATTCAGGTATTCCACCCCTCCAAACTG
AAGTGGAGGTACACGTTACTGTCAGAAATAAATCCAACCCATTGTTTCAGAGTCCATACTACAA
AGTGAAAGTCCCTGAAAATATCACACTCTATACCCCGATTCTTCACACACAGGCCCGGAGTCCA
GAGGGCCTGAGGCTCATCTACAACATTGTAGAGGAAGAGCCTTTGATGTTGTTTACCACTGACT
TTAAAACTGGTGTCCTTACAGTGACAGGACCCCTGGACTATGAGTCAAAGAACAAACATGTGTT
CACAGTGAGAGCCACAGACACGGCTCTGGGGTCCTTTTCTGAAGCCACAGTGGAAGTCTTAGTT
GAGGACATCAATGATAACCCTCCCACTTTTTCCCAGTTGGTATATACCACTTCGGTTTCCGAGG
GCTCACCTGCTCAGACTCCTGTAATTCAACTGTTGGCTTCTGACCAAGACTCAGGACAGAACCA
AGATGTCTCCTATCAGATTGTAGAGGATGGTTCAGATGTTTCTAAGTTCTTCCGGATCAATGGG
AGCACAGGGGAGATATTCACCATCCAAGAGCTGGACTATGAGACTCACCAACACTTTCGTGTGA
AGGTCAGGGCCATGGATAAAGGAGATCCCCCTCTCACTGGTGAAACACTTGTGGTTGTCAATGT
GTCAGACATCAATGATAATCCCCCAAAGTTCAGAGAACCTCAGTACGAAGCCAACGTCAGTGAG
CTAGCAACCTGTGGCCACCTAGTTCTAAAAGTTCAAGCTCTTGACCCCGATATCGGGGACACCT
CTCGCCTGGAGTACCTGATTCTTTCTGGCAACCAGGACCGACATTTCTCCATCAATAGCACATC
GGGAATCATTTCTATGTTCAACCTTTGCAAAAAGCAGCTGGACTCATCTTACAACTTGAGAGTT
GGTGCTTCTGATGGGGTCTTCCGAGCAACGGTGCCAGTATATATCAACACTACCAATGCCAACA
AGTATAGTCCGGAGTTCCAGCAAAACGTCTATGAAGCTGAATTAGCTGAGAATGCAAAGGTGGG
GACAAAGGTGATTGAGCTGCTAGCCATAGACAAAGACAGTGGTCCCTATGGTACAGTGGACTAC
ACCATCATCAATAAACTAGCTGGGGAAAGGTTCTTCATAAATCCCCGTGGTCAGATCACCACCC
TTCAGAAACTGGACCGGGAAAATTCAACGGAAAGGGTGATTGCTATTAAGGTCATGGCAAGGGA
TGGAGGAGGGAAAGTGGCCTTCTGCACCGTGAAGATCATTCTCACTGATGAAAATGACAATGCC
CCACAATTCAAAGCATCCGGGTACACTGTGTCCATCCCATCCAATGTCAGCAGAGACTCCCCCA
TTATCCAGGTGCTGGCTTACGATGCAGACGAAGGTCGGAATGCAGACGTTACCTACTCAGTAGA
CTCAACCGAGGACCTTGCGGAAGAGATCATTGAAGTCAACCCCACCACCGGTGTGGTCAAGGTG
AAGGAGAGCCTGGTGGGACTGGAAAACAGGGCTGTTGATTTCAACATCAAAGCCCAGGATGGTG
GTCCTCCTCACTGGGACTCTCTGGTACCAGTACGGCTGCAAGTGGTTCCTAATGAAATCCCTTT
GCCCAAGTTTTCTGAACCTCTGTATACTTTCTCTGCACCTGAAGACCTTCCAGAAGGCTCTGAA
ATTGGGTCTGTGAAGGCAGTAGCTGCTCAAGATCCGATCATCTACAGTCTGGTTCAGGGTACCA
CTCCAGAGAGCAACAGTGATGATGTCTTCTCCTTGGACCAAGACACGGGAGTCCTAAAGGTGAG
GAAAGCCATGGATCATGAGTCCACTAAATGGTACCAGATTGACCTGATGGCACATTGCCCTCAT
GAGGATACTGACCTGGTGTCATTGGTCTCTGTCAGCATTCAAGTGGAAGATGTCAATGACAATA
GGCCTGTGTTTGAGGCTGATCCATATAAGGCTTTCCTCACGGAGAATATGCCAGGAGGGACCAC
AGTCATTCAGGTGACTGCCAATGACCAGGACACTGGAAGTGATGGACAGGTGAGCTACAGGCTG
TCAGTGGAGCCTGGTAGCAACATCCACGAACTCTTTGCTGTTGACAGTGAGAGCGGCTGGATCA
CCACACTCCAAGAACTCGACTGTGAGACTCAGCAGACTTACCGTTTCTACGTGGTGGCCTTTGA
TCATGGACAGACCATCCAGCTGTCTTCTCAGGCCCTGGTTGAGGTCTCCATCACAGACGAGAAT
GACAACCCCCCTCGGTTTGCTTCCGAAGACTATAGAGGCTCTGTGGTGGAGAACAATGAGCCTG
GTGAACTTGTGGCTACACTGAAGACTTTGGATGCTGACGTCTCTGACCAGAATAGGCAGGTCAC
CTGCTATATCACAGAGGGAGACCCCCTGGGTCAATTTAGCATCAGTCAAGTTGGGGATGAATGG
AGAATCTCCTCAAGGAAGACTCTGGACCGAGAACACATAGCCAAGTATCTACTCAGAGTCACAG
CATCAGATGGCAAGTTCCAGGCTTCGGTCCCCGTGGAGGTCTTTGTCGTGGACATCAACGATAA
CAGCCCGCAGTGCTCACAGCTTCTCTACACTGGCAAGGTCCGTGAGGATGTCACCCCCGGACAT
TTCATCTTGAAAGTTTCTGCCATAGATGTGGACATGGACACCAATGCTCAGATCACATACTCTC
TGCATGGACCCGGGGCCCAGGAATTCAAGCTGGACCCTCACACAGGGGAGCTGACCACACTCAC
AGTCCTGGACCGGGAAAGGAAGGATGTATACAACCTTGTTGCTAAGGCAACAGATGGAGGGGGC
CAATCATGCCAGGCAGAGGTGACTCTCCACATTGAGGATGTGAATGATAACGCCCCGAGGTTCT
TCCCCAGTCACTGTGATGTGGCTGTCTTTGACAACACCACAGTTAAGACCCCTGTGGCTGTGGT
CTTTGCCCGGGACCCTGACCAGGGTGCCAACGCTCAGGTGGTGTACTCACTGACGGACTCTGCT
GATGGCCAGTTCTCCATTGATGCCACCTCAGGAGTGATTCGCCTGGAGAAGCCTCTGCAGGTCA
GAGCAAGCTCAGCTGTGGAGCTCACGGTCCGTGCCTCAGACCTAGGCACCCCAATACCACTGTC
CACATTGGGCACTGTTACAGTCTCCGTAGTGGGCCTGGAGGACTACCTTCCCATCTTCCTGAAC
GCGGAGCACAGCACACAGGTGCCTGAGGATGCTCCAATAGACATGGAGGTGCTACACCTGGCTA
CCCTCACACGTCCCGGCTCAGAGAAGACTGGTTACCACATCACCGGAGGGAATGAGCAGGGGAA
GTTCCGGCTGGATGCTCACACAGGAATCCTGTATGTCAATGGGAGCCTGGACTTTGAGACAAAC
CCCAAGTACTTCCTGTCCATTGAATGCAGCCGGAAGAGCTCTTCCTCCCTCAGCGATGTGACCA
CCATCGTGATTAATGTCACCGATGTCAATGAACACCACCCCCGATTCACCCATGACCTGTACAC
TGTGAGGGTCTTAGAGAACGCCGTTGTGGGCGATGTCATCTTGACGGTGTCAGCATCTGATGAC
GATGGACCTGTTAATAGTGCCATTACCTATAGCCTGGTAGGAGGAAACCAGCTTGGACACTTCA
CCATCAACCCCAAGAAAGGGAAACTCCAGGTGGCCAAGGCACTGGACTGGGAACAGACCCCCAG
CTACTCCCTGAGGCTCCGAGCCACAGACAGTGGGCAGCCACCATTGCATGAGGACACAGAAGTG
GCTGTTGAAGTGGTTGATGTTAATGACAACCCGCCCAGGTTCTTCCAGCTCAACTACAGCACTT
CTGTCCAGGAGAACTCCCCCATTGGCATCAAAGTCCTGCAGCTGATCCTGGATGATCCTGACTC
CCCACAGAATGGGCCTCCCTACTTCTTCCGGATCACTGAGGGGAACACTGGGTCTGTGTTCCGG
GTGACTCCAGATGGCTGGCTGGTGACAGCTGCAAGCCTGAGCAAGAAGGCCCGGGAGTGGTATC
AGCTTCACATCGAGGTGTCAGACAGTGGCCTCCCGCCCTTATCATCTTCCACATTGGTCAGAGT
ACAAGTCACGGAGCAGAGCCGCTACCCGCCCTCTACACTCCCACTGGAAATCTCCATCACAAAG
GGGGAGGAGGAATTTCAGGGTGGCATGATAGGTAAAATCCATGCCACAGACCGAGACCCACAGG
ACACGCTGACCTACAGCCTGGAGCAGGAGGGAGGCCTGGACAGGTACTTCACAGTGGGTGCATC
CGATGGCAAAATTATTGCCTCTCAAGGACTGCCTCATGGCCGATACTCGTTCAATGTCACAGTC
AGTGATGGGACCTTCACCACCACCACTGGGGTCCATGTCCACGTGTGGCACATGGAGCCGGAGG
TTCCGCAGCAAGCTGTGTGGCTGGGCTTCCACCAGCTCACTCCCGAGGAGCTCGTGAGTGACCA
CTGGCGCAACCTGCAGAGATTCCTCAGCAACCTCCTGGACGTCAAACGAGCCAACATCCACTTG
GCCAGCCTGCAGCCTGCGGAGGTCACAGCTGGGGTGGATGTACTCCTGGTCTTCGAGAGGCATT
CTGGGACCTCCTATGATCTCCAGGAGCTGGCGTCTGCCATAGCCCACTCAGTCAGAGAGATAGA
ACACTCAGTAGGAATTCGGATGAGGTCAGCTCTGCCCGTGGTTCCGTGCCAAGGGCAAAGCTGC
CAGGATCAAACCTGCCAAGAGACAGTGTCTCTGGAGCCCAGGGTTGGACCCTCTTACAGCACAG
CCAGGCTCAGTATCCTGACACCACGACATCACCTGGGGAGAAACTGCTCCTGCAATGGTACCAC
CTTGAGGTTCAGTGGTCAGAGCTACGTGCAGTATAGGCCCCTAGAGGCTCAGAACTGGCAGATC
CATTTCTACCTGAAAACTCTCCAGCCATGGGCCCTTCTAATGTTCACCAATGAAACAGCCTCTA
TTTCCTTGAAGCTGGCCAATGGCTTCTCTCACCTGGAATACCATTGTCCTGGTGGTTTCTATGG
AAACCTTTCCTCCCGTTATCCTGTGAATGATGGACAGTGGCACTCCATGCTGTTGGAGGAGAGG
GACACGTCTGTTCATCTGTTGGTCGACATCACAGACAATGCTTCCCTTGTCATCCCAGAGGAAT
GTCAGGGTCTGAGGACTGAGCGACAACTACTGCTGGGTGGCCTTGTCCCCTCAAATCCTTCCTC
AAATGTCTCCCTGGGCTTTGAAGGCTGCCTGGATGCTGTTGTGGTCAACGGTGAGAGGTTAGAG
TTGCTTGGCCGTGAAAAGAAGATGGAGGGCCGGCTAGAGACATGGGCCCTCAGCCAGTGCTGCT
GGCCCGGCACTGCCTGCAGCCAGAGCCCATGTCTCAATGGTGGGAGCTGTTCGCCTGCCCTTGG
ATCAGGCTACCTGTGCAGATGCCCTCCTCCATTCTCTGGCAGGAACTGCGAACTTGGAAGGGAG
AATTGTACTTCTGCGCCCTGCCAAGAAGGTGGCACATGTGTCTCCTCCCCTGAAGGCACTTCCT
GCAACTGCCCTCACCCTTACACAGGTGACAGATGTGAGATGGAAGCAAGAGGTTGCTCCGGAGG
ACACTGTCTCATCACTCCTGAGATTAAGAGAGGGGACTGGGGACAGCAGGAGTTTCTGGTAATC
ACAGTAGCCTTACCTCTCGTCATCATTGCCACTGTGGGACTCCTCCTCTACTGCCGTCGTCGCA
AATCTCACAAACCGGTGACCATGGAGGACCCGGACCTCCTAGCAAGGAGCATTGGTGTTGACAC
CCAAGCTTCGCCTGCCATCGAGCTCGACCCCCTTAACACCAGCTCCTGCAACAACTTAAACCAA
CCGGAGCCCAGCAAGACCTCGGTTCCAAATGAACTCGTCACCTTCGGACCTAGCTCTAAACAGC
GGCCGATGGTGTGCAGCGTGCCTCCAAGGCTCCCACCAGCTGCAGTCTCCTCCCACCCTGGCCA
CGAGCCCATCATCAAGAGAACCTGGTCAGGCGAGGAGCTGGTGTACCCAAGTGGAGCTGCAGTC
TGGCCTCCCACTTACTCCCGGAAGAAGCATTGGGAATACCCACATCCTGAAACAATGCAGGGAA
CTCTGCCACCCTCTCCTCGGCGCCATGTTGGTCCTGCCGTGATGCCAGATCCCACTGGGCTCTA
TGGGGGCTTCCCTTTCCCCTTGGAACTGGAAAACAAACGGGCACCCCTCCCACCCCGTTACAGC
AATCAGAACCTGGAAGACCTGATGCCTCCACGGCCTCCCAGCCCCCGGGAACATTTGCTTGCCC
CCTGTCTCAACGAGTACACAGCTATCAGCTACTACCATTCACAGTTCCGCCAGGGAGGGGGTGG
GCCCTGCCTGGCAGAGGGGGGCTATAAGGGGGTGAGCATGCGTCTCAGCAGAGCTGGACCTTCC
TATGCTGACTGTGAGGTGAATGGTGGGCCTGCCACAGGGCGGAGCCAACCTCGAGCGCCCCCCA
ACTACGAGGGCTCAGATATGGTAGAGAGTGACTATGGAAGTTGCGAGGAAGTCATGTTCTAGCT
TCCTGCTTTCAGAGGAAAGCATGGGGAAGCCCAGGCCCCACACTGTCTTCCAGTGTCACGGGAA
GTAAGTTGGGTGTGGCTGGAAGAAACGGGAAGCTACCACATCCCCAGTCCACATGTCCATCTCT
TAAAATGTGCTCTTCGGGTCCCCAGCTTGTCCTTGAGGGTGAAGGGAAGCTGAGGGGAGAGCTG
TAAAATTCGCAGTAGGGCCCCAGGAAAGAGGAGGTACCCAGCCCGGTGCACGCGGGGGTGAGAA
CTAGGAGTGTAATCGCTCAGATCTGCCAGTGCCCAGCCCCAGCAAGAAAGAGCTCCAAGCACCA
GCTCAGCGTGTTTGGGCCACATTCTTACAGCTTCTCACAGGCCCATCATGGGGCACGCGGGTTT
GTGCCCAATAGGCAACTATGCATGCATCTACTGTGGAGGAGAGACCAGGGTCGTTTGAGATCCA
TGCAGTGGCCTCCTAGGGGCCGATAAGCAGTCTGCAAGCAGGTATTCACCCGAGTATCTGCTTT
GTGTGTGTGTGTACCTTTGGGACATCTATGCAAAGTGTCTCATGTCAGCCTCATTCTGGGCACA
GGCAGCAAGAACACTCTTGGAAGTTGAGCCACTTGGACTGCCATCTTCTGGAAGTCTTGTCCTT
GAAGCTTCAGGACTTATTCCACCTCTGCCGGTGGGATCTTGCCTGGAAACTTTTGTGCTGAAGA
CGTGCGATCTCATGGAATGCTCAGTTAATCGTTCCAAACTTCCCAGGCACTTTTGGCCAAGAGC
AAGAAGGATGTAGTTCATTTGAAAATTTCTTAGGCACTTTTTAACCTTGCTCTCTGGCTGTGTT
TTCCCAAGAGGGTTTCTTCTTGTTTAGACACAAGGAATTCAACTGCCATCCAGACCCAGGTAGA
GGTGGAGAGCCAGTCAGCGGATCCAGGCCAGACACCCTGCCTTCTCCCTCCCCCTTCATCACAG
ATGCCTGCCAATCAAGTGTTACCCACACTGACCCTGCCCTGTGCATGGAGGGTCAGTGTGGGCA
CATGTCTACACATGTGGGTACCCATGGACCATGTGTATGCACATATGTGTAGAAAGTTATGTAG
CTGGGAGTGGCAGAGACTGGAAGCCAGGGAGGCCTATAGTGGCCTCAGCCCCCTGTCCTCTGCC
AGTCCCTCTCTGGTCCACTGCGCTTTCACGTGTGTGGGTTTGGAGTTAGAAGTCAAGAGGAAGA
GCCACAGAGACTCCCACCTACAGAGCTGTTCAGAGAGACTGCTGTGTAGGAGGAGGCATTCGTC
GGCCATGTGTGACTGTGGGTGTGACTGATGGATTGAACAAGTGGCTTTGGTGGCCATTTGATTT
TTTTTTTAACAATAAATATCTTTTTTACTGTT

hide sequence

RefSeq Acc Id:

XM_039086801 ⟹ XP_038942729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,864,765 - 39,957,027 (-)	NCBI
mRatBN7.2	10	39,364,072 - 39,456,324 (-)	NCBI

RefSeq Acc Id:

XM_039086802 ⟹ XP_038942730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,864,765 - 39,957,027 (-)	NCBI
mRatBN7.2	10	39,364,072 - 39,456,324 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_075243	(Get FASTA)	NCBI Sequence Viewer
	XP_038942729	(Get FASTA)	NCBI Sequence Viewer
	XP_038942730	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA32458	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055459
GenBank Protein	O88277	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_075243 ⟸ NM_022954
- Peptide Label:	precursor
- UniProtKB:	O88277 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTLVLLGLAILLLHRAACEKSLEETIPPLSWRFTHSLYNATIYENSAPKTYVESPVKMGMYLAE PHWVVKYRIISGDAAGVFKTEEHVVGNFCFLRIRTKSSNTALLNREVRDSYTLIVQASDKSLEF EALTQVVVHILDQNDLKPLFSPPSYRVTISEDRPLKSPICKVTATDADLGQNAEFYYAFNARSE VFAIHPTSGVVTVAGKLNVTRRGKYELQVLAVDRMRKISEGNGFGNLASLVIRVEPVHRKPPAI NLVVLNPPEGDEGDIYAIVTVDTNGSGAEVDSLEVVGGDPGKYFKVLRSYAQGNEFNLVAVRDI NWAEHPHGFNISLQTHSWSRFPPHSIIRAFHLPSWKLANLRFEKAVYRVKLSEFSPPGSRVALV KVTTALPNLRYSLKPSSRNTAFKLNARTGLITTTKLVDFHEQNQYQLHVKTSLGQATTTVIIDI VDCNNHAPVFNRSSYEGTLDENIPPGTSVLTVTATDQDHGDNGHITYSIAGPKAVPFSIDPLLG VISTTKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFEEVNCTVSLRQD VPVGKSIMAVSAIDMDELQNLKYEIVSGNEQDYFHLNHFSGVISLKRSFMNLTAVRPTIYSLKI TASDGKNYASPTTLKVTVVKDPHSEVPVQCDKTGVLTHITKTILQSAGLQSQELGEEEFTSLSN YQINHHSPQFEDHFPQSIDILEQVPINTPLARLAATDPDTGFHGKLVYVISDGNEEGCFDIELE TGLLMVAAALDYETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDNPPRFPPGGYQLTISED TEVGTTIAELKTEDADSEDNRRVRYTLLTPTEKFSLHPFTGELVVTGHLDRESESQYILKAEAR DQPTKGHQLFSVTDLIVTLEDINDNPPQCITEHRRLKVPEDMPLGTVLTFLDASDPDLGPAGEV KYILVEDAHGTFQVHPMTGALSLEKELDFERRAGYNLSFWASDSGKPLSRRTLCHVEVLVMDVN ENLHSPHFSSFVYQGQVQENSPAGTPVMVVTAQDDDSGLDGELQYFLRAGTGLETFSINQDTGM LETLAPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPSMSRPVFYPSVLEDAPL GTSVLQLEAWDPDSSSQGKLTFNLTSGNHLGHFIVHPFTGLLTTAKQLDRENKDEYVLEVTVQD NGDPSLRSTSRVVVCILDVNDNPPMFSHKLFNVRLSERLSPLSPEPVYRLVASDPDEGLNGSVT YSIEESDEESFRIDPVTGVVSSSSTFAAGEYNILTIKATDSGQPALSTSVRLHIEWIPQPRPSS IPLSFDESYYSFTVMETDPVNHMVGVISVEGRPGLFWFHISDGDKDMDFDIEKTTGSIVIARPL DTRRKSSYNLTVEVTDGFHTIATQVHIFMIANINHHRPQFLQDHYEIRVPQDTLPGVELLRVQA TDQDHGKGLIYTILSSQDPGSANLFQLDPSSGVLVTVGTLELHSGPSQHILTVMVRDQEMPIKR NFVWVTIHVEDGNLHSPHFTQLRYEANVPDTTAPGTELLQVRAVDADRGANAEIHYSFLKGNSD GFFNIDSLLGIITVAQRLYHVHLTRHALTVKAEDQGSPRRHDLALVVIHVHPSDSSAPVFSKDE YFIEIPESVPIGSPILLLSAGSSSEVTYELREGNKDSVFSMNSYSGLISTQKRLDHEKVPSYRL RIRGSNMAGVFTEVVALVYIIDENDNPPAFGKPTFLGHISEAAPLHSLILGEDNSPLVVRASDS DREANSLLVYKILEPEALKFFKIDPSMGTLTTTSELDFEDTPLFQFNIYVHDQGTPILFAPRSA KVIIHVRDVNDSPPRFSEQIYEVAVVEPIHPGMGLLTVQAEDNDSRVTYSIKTSNADEAVTIHP TTGQISVVNPATLRLFQKFSIRASDGLYHDTAVVKISLTQVLDKSLQFDQDVYRARVTENTPHR KALVILGVHGNHLNDTLSYFLLNGTDLFHMIESAGVLQTRGGTFDREQQDTHEVAVEVRDNRVP QRVAQALVRVSVEDVNDNIPEFQHLPYYTVIQDGTEPGDVLFQVSATDKDLGANGSVTYGFAED YAYFRIDPYVGDISLKKPFDYQALNKYHLRVIARDSGIPPLQTEVEVHVTVRNKSNPLFQSPYY KVKVPENITLYTPILHTQARSPEGLRLIYNIVEEEPLMLFTTDFKTGVLTVTGPLDYESKNKHV FTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVSEGSPAQTPVIQLLASDQDSGQN QDVSYQIVEDGSDVSKFFRINGSTGEIFTIQELDYETHQHFRVKVRAMDKGDPPLTGETLVVVN VSDINDNPPKFREPQYEANVSELATCGHLVLKVQALDPDIGDTSRLEYLILSGNQDRHFSINST SGIISMFNLCKKQLDSSYNLRVGASDGVFRATVPVYINTTNANKYSPEFQQNVYEAELAENAKV GTKVIELLAIDKDSGPYGTVDYTIINKLAGERFFINPRGQITTLQKLDRENSTERVIAIKVMAR DGGGKVAFCTVKIILTDENDNAPQFKASGYTVSIPSNVSRDSPIIQVLAYDADEGRNADVTYSV DSTEDLAEEIIEVNPTTGVVKVKESLVGLENRAVDFNIKAQDGGPPHWDSLVPVRLQVVPNEIP LPKFSEPLYTFSAPEDLPEGSEIGSVKAVAAQDPIIYSLVQGTTPESNSDDVFSLDQDTGVLKV RKAMDHESTKWYQIDLMAHCPHEDTDLVSLVSVSIQVEDVNDNRPVFEADPYKAFLTENMPGGT TVIQVTANDQDTGSDGQVSYRLSVEPGSNIHELFAVDSESGWITTLQELDCETQQTYRFYVVAF DHGQTIQLSSQALVEVSITDENDNPPRFASEDYRGSVVENNEPGELVATLKTLDADVSDQNRQV TCYITEGDPLGQFSISQVGDEWRISSRKTLDREHIAKYLLRVTASDGKFQASVPVEVFVVDIND NSPQCSQLLYTGKVREDVTPGHFILKVSAIDVDMDTNAQITYSLHGPGAQEFKLDPHTGELTTL TVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRFFPSHCDVAVFDNTTVKTPVAV VFARDPDQGANAQVVYSLTDSADGQFSIDATSGVIRLEKPLQVRASSAVELTVRASDLGTPIPL STLGTVTVSVVGLEDYLPIFLNAEHSTQVPEDAPIDMEVLHLATLTRPGSEKTGYHITGGNEQG KFRLDAHTGILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLY TVRVLENAVVGDVILTVSASDDDGPVNSAITYSLVGGNQLGHFTINPKKGKLQVAKALDWEQTP SYSLRLRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLNYSTSVQENSPIGIKVLQLILDDPD SPQNGPPYFFRITEGNTGSVFRVTPDGWLVTAASLSKKAREWYQLHIEVSDSGLPPLSSSTLVR VQVTEQSRYPPSTLPLEISITKGEEEFQGGMIGKIHATDRDPQDTLTYSLEQEGGLDRYFTVGA SDGKIIASQGLPHGRYSFNVTVSDGTFTTTTGVHVHVWHMEPEVPQQAVWLGFHQLTPEELVSD HWRNLQRFLSNLLDVKRANIHLASLQPAEVTAGVDVLLVFERHSGTSYDLQELASAIAHSVREI EHSVGIRMRSALPVVPCQGQSCQDQTCQETVSLEPRVGPSYSTARLSILTPRHHLGRNCSCNGT TLRFSGQSYVQYRPLEAQNWQIHFYLKTLQPWALLMFTNETASISLKLANGFSHLEYHCPGGFY GNLSSRYPVNDGQWHSMLLEERDTSVHLLVDITDNASLVIPEECQGLRTERQLLLGGLVPSNPS SNVSLGFEGCLDAVVVNGERLELLGREKKMEGRLETWALSQCCWPGTACSQSPCLNGGSCSPAL GSGYLCRCPPPFSGRNCELGRENCTSAPCQEGGTCVSSPEGTSCNCPHPYTGDRCEMEARGCSG GHCLITPEIKRGDWGQQEFLVITVALPLVIIATVGLLLYCRRRKSHKPVTMEDPDLLARSIGVD TQASPAIELDPLNTSSCNNLNQPEPSKTSVPNELVTFGPSSKQRPMVCSVPPRLPPAAVSSHPG HEPIIKRTWSGEELVYPSGAAVWPPTYSRKKHWEYPHPETMQGTLPPSPRRHVGPAVMPDPTGL YGGFPFPLELENKRAPLPPRYSNQNLEDLMPPRPPSPREHLLAPCLNEYTAISYYHSQFRQGGG GPCLAEGGYKGVSMRLSRAGPSYADCEVNGGPATGRSQPRAPPNYEGSDMVESDYGSCEEVMF hide sequence

Ensembl Acc Id:

ENSRNOP00000055459 ⟸ ENSRNOT00000058665

RefSeq Acc Id:	XP_038942729 ⟸ XM_039086801
- Peptide Label:	isoform X1
- UniProtKB:	F1LPM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942730 ⟸ XM_039086802
- Peptide Label:	isoform X1
- UniProtKB:	F1LPM1 (UniProtKB/TrEMBL)

Protein Domains

Cadherin EGF-like Laminin G Laminin G-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620656	AgrOrtholog
BioCyc Gene	G2FUF-25084	BioCyc
Ensembl Genes	ENSRNOG00000012575	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000058665	ENTREZGENE
Gene3D-CATH	2.60.120.200	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
	Laminin	UniProtKB/Swiss-Prot
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	ConA-like_dom_sf	UniProtKB/Swiss-Prot
	EGF-like_Ca-bd_dom	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	Laminin_G	UniProtKB/Swiss-Prot
KEGG Report	rno:65048	UniProtKB/Swiss-Prot
NCBI Gene	65048	ENTREZGENE
PANTHER	CADHERIN-23	UniProtKB/Swiss-Prot
	PROTOCADHERIN-16	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	EGF	UniProtKB/Swiss-Prot
	Laminin_G_2	UniProtKB/Swiss-Prot
PhenoGen	Fat2	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
	EGF_1	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	EGF_3	UniProtKB/Swiss-Prot
	LAM_G_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012575	RatGTEx
SMART	EGF	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
	LamG	UniProtKB/Swiss-Prot
	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot
	SSF49313	UniProtKB/Swiss-Prot
	SSF49899	UniProtKB/Swiss-Prot
UniProt	F1LPM1	ENTREZGENE, UniProtKB/TrEMBL
	FAT2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-05	Fat2	FAT atypical cadherin 2	Fat2	FAT tumor suppressor homolog 2 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-22	Fat2	FAT tumor suppressor homolog 2 (Drosophila)	Fath2	fat tumor suppressor homolog 2 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Fath2	fat tumor suppressor homolog 2 (Drosophila)	Fat2	MEGF1	Symbol and Name updated	1299863	APPROVED
2002-08-07	Fat2	MEGF1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains multiple cadherin and EGF-like motifs	68762
gene_expression	expressed in the cerebellum of the rat brain	68762
gene_process	Drosophila homolog controls the cell proliferation and morphogenesis in the larval imaginal discs	68762
gene_process	involved in the development of the cerebellum	68762

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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