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Gene: Extl3 (exostosin-like glycosyltransferase 3) Rattus norvegicus

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Symbol:

Extl3

Name:

exostosin-like glycosyltransferase 3

RGD ID:

62065

Description:

Predicted to enable glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity; magnesium ion binding activity; and protein-hormone receptor activity. Involved in positive regulation of cell growth. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and plasma membrane. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

exostoses (multiple)-like 3; exostoses-like 3; exostosin-like 3; exostosin-like 3-like; LOC102549615; Reg receptor; Regr

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EXTL3 (exostosin like glycosyltransferase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Extl3 (exostosin-like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Extl3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EXTL3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EXTL3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Extl3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EXTL3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EXTL3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Extl3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Extl3 (exostosin like glycosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CHIC2 (cysteine rich hydrophobic domain 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Extl3 (exostosin-like glycosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EXTL3 (exostosin like glycosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	extl3 (exostosin-like glycosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	botv	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rib-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	extl3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	extl3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	43,469,293 - 43,559,760 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	43,471,366 - 43,495,356 (-)	Ensembl				GRCr8
mRatBN7.2	15	39,294,033 - 39,384,086 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	39,293,605 - 39,338,898 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	41,159,992 - 41,183,433 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	42,310,683 - 42,334,125 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	40,756,090 - 40,779,885 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	48,420,419 - 48,465,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	48,422,492 - 48,445,592 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	52,167,241 - 52,307,996 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	44,400,139 - 44,424,584 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	38,971,658 - 38,994,995 (-)	NCBI		Celera
RGSC_v3.1	15	44,415,838 - 44,440,284 (-)	NCBI
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Desbuquois dysplasia (ISO)

genetic disease (ISO)

Immunoskeletal Dysplasia with Neurodevelopmental Abnormalities (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

corosolic acid (ISO)

decabromodiphenyl ether (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

flavonoids (EXP)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

leflunomide (ISO)

methidathion (ISO)

methimazole (EXP)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propiconazole (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycoprotein biosynthetic process (IEA)

heparan sulfate proteoglycan biosynthetic process (IEA,ISO)

negative regulation of cytokine production involved in inflammatory response (ISO)

negative regulation of inflammatory response (ISO)

negative regulation of inflammatory response to wounding (IEA,ISO)

negative regulation of keratinocyte differentiation (IEA,ISO)

positive regulation of cell growth (IDA)

positive regulation of detection of glucose (ISO)

positive regulation of keratinocyte proliferation (IEA,ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA,ISO)

endoplasmic reticulum membrane (IEA)

Golgi apparatus (IEA,ISO)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity (IEA,ISO)

glycosyltransferase activity (IEA,ISO)

magnesium ion binding (IEA,ISO)

protein binding (ISO)

protein-hormone receptor activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

heparan sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Localization of Reg receptor in rat fundic mucosa.	Kazumori H, etal., J Lab Clin Med 2002 Feb;139(2):101-8.
3.	Identification of a receptor for reg (regenerating gene) protein, a pancreatic beta-cell regeneration factor.	Kobayashi S, etal., J Biol Chem 2000 Apr 14;275(15):10723-6.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:10639137	PMID:16874863	PMID:22158612	PMID:28132690	PMID:28148688

Genomics

Comparative Map Data

Extl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	43,469,293 - 43,559,760 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	43,471,366 - 43,495,356 (-)	Ensembl				GRCr8
mRatBN7.2	15	39,294,033 - 39,384,086 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	39,293,605 - 39,338,898 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	41,159,992 - 41,183,433 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	42,310,683 - 42,334,125 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	40,756,090 - 40,779,885 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	48,420,419 - 48,465,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	48,422,492 - 48,445,592 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	52,167,241 - 52,307,996 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	44,400,139 - 44,424,584 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	38,971,658 - 38,994,995 (-)	NCBI		Celera
RGSC_v3.1	15	44,415,838 - 44,440,284 (-)	NCBI
Cytogenetic Map	15	p12	NCBI

EXTL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	28,607,736 - 28,756,562 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	28,600,469 - 28,756,561 (+)	Ensembl			hg38	GRCh38
GRCh37	8	28,559,018 - 28,613,116 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	28,615,072 - 28,667,121 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	28,615,071 - 28,667,121	NCBI
Celera	8	27,519,006 - 27,571,052 (+)	NCBI		Celera
Cytogenetic Map	8	p21.1	NCBI
HuRef	8	27,104,516 - 27,156,747 (+)	NCBI		HuRef
CHM1_1	8	28,761,018 - 28,813,245 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	28,885,904 - 29,034,785 (+)	NCBI		T2T-CHM13v2.0

Extl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	65,289,508 - 65,387,322 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	65,289,509 - 65,387,304 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	65,052,059 - 65,149,899 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	65,052,060 - 65,149,855 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	65,670,896 - 65,716,943 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	64,006,173 - 64,034,585 (-)	NCBI		MGSCv36	mm8
Celera	14	62,814,500 - 62,860,622 (-)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.86	NCBI

Extl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	51,076,319 - 51,102,435 (+)	Ensembl
ChiLan1.0	NW_004955403	51,076,323 - 51,102,435 (+)	NCBI	ChiLan1.0	ChiLan1.0

EXTL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	47,141,178 - 47,300,524 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	22,877,190 - 23,013,515 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	27,983,700 - 28,035,879 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	25,079,531 - 25,233,599 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	25,174,414 - 25,233,599 (+)	Ensembl			panPan2	panpan1.1

EXTL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	28,788,803 - 28,833,964 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	28,790,506 - 28,937,647 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	29,437,368 - 29,587,684 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	28,944,632 - 29,095,861 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	28,944,637 - 29,029,690 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	28,905,043 - 29,055,721 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	28,790,655 - 28,940,548 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	28,953,232 - 29,105,065 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Extl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	7,108,930 - 7,137,757 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936675	1,448,366 - 1,477,216 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936675	1,448,381 - 1,479,735 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EXTL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	12,437,515 - 12,563,544 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	12,437,551 - 12,563,548 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	13,660,607 - 13,712,760 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EXTL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	26,729,772 - 26,861,953 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	26,821,141 - 26,864,926 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	15,268,419 - 15,404,953 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Extl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	23,324,512 - 23,368,584 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	23,257,623 - 23,370,782 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Extl3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	59,320,785 - 59,366,873 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Extl3
2124 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	182
Count of miRNA genes:	130
Interacting mature miRNAs:	154
Transcripts:	ENSRNOT00000018583
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Markers in Region

BF392677

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	39,304,655 - 39,304,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	48,430,778 - 48,430,883	NCBI	Rnor6.0
Rnor_5.0	15	52,177,600 - 52,177,705	UniSTS	Rnor5.0
RGSC_v3.4	15	44,409,770 - 44,409,875	UniSTS	RGSC3.4
Celera	15	38,980,202 - 38,980,307	UniSTS
RH 3.4 Map	15	335.52	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_020097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB033367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018583 ⟹ ENSRNOP00000018583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	39,293,605 - 39,338,898 (-)	Ensembl
Rnor_6.0 Ensembl	15	48,422,492 - 48,445,592 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077197 ⟹ ENSRNOP00000073791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	43,471,366 - 43,495,356 (-)	Ensembl
mRatBN7.2 Ensembl	15	39,301,240 - 39,338,844 (-)	Ensembl
Rnor_6.0 Ensembl	15	48,422,918 - 48,445,588 (-)	Ensembl

RefSeq Acc Id:

NM_020097 ⟹ NP_064482

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,471,366 - 43,495,161 (-)	NCBI
mRatBN7.2	15	39,295,673 - 39,319,472 (-)	NCBI
Rnor_6.0	15	48,422,492 - 48,445,592 (-)	NCBI
Rnor_5.0	15	52,167,241 - 52,307,996 (-)	NCBI
RGSC_v3.4	15	44,400,139 - 44,424,584 (-)	RGD
Celera	15	38,971,658 - 38,994,995 (-)	RGD

Sequence:

show sequence

ACTCATGACAGGCTATACCATGTTGCGGAATGGGGGAGTGGGGAACGGTGGTCAGACCTGTATG
CTGCGCTGGTCCAACCGCATCCGGCTGACCTGGCTGAGTTTCACGCTGTTCATCATCCTGGTCT
TCTTCCCCCTCATTGCCCACTATTACCTCACCACTCTGGATGAGGCAGATGAGGCCGGCAAGCG
CATCTTTGGCCCCCGGGCTGGCAACGAGCTCTGTGAGGTAAAGCACGTCCTAGATCTTTGTCGG
ATCCGCGAGTCTGTGAGCGAAGAGCTTCTACAGCTAGAAGCCAAGCGGCAGGAGCTGAACAGCG
AGATTGCCAAGCTAAACCTCAAGATTGAAGCCTGTAAGAAGAGTATAGAGAACGCCAAGCAGGA
CCTGCTGCAGCTCAAGAATGTCATTAGCCAGACAGAGCACTCCTACAAGGAGCTGATGGCCCAG
AACCAGCCCAAACTGTCACTGCCCATCCGGCTGCTCCCTGAGAAGGATGACGCTGGCCTTCCAC
CCCCCAAGGTCACTCGGGGTTGCCGGCTACACAACTGCTTCGATTACTCTCGTTGCCCTCTGAC
GTCTGGCTTTCCTGTCTTCGTCTATGACAGTGACCAGTTTGCCTTTGGGAGCTACCTGGACCCT
TTGGTCAAGCAGGCTTTTCAGGCTACAGTGAGAGCCAACGTTTATGTTACAGAAAATGCAGCCA
TCGCCTGCCTGTATGTGGTGTTAGTGGGAGAGATACAAGAGCCCGCTGTGCTGCAGCCTGCCGA
CCTTGAGAAGCAGCTGCATTCTCTGCCACACTGGAGGACAGACGGACACAACCATGTCATCATC
AATCTGTCCCGGAAGTCAGACACACAAAATTTACTGTACAATGTCAGTACAGGTCGGGCCATGG
TGGCCCAGTCTACCTTCTATGCTGCCCAGTACAGAGCTGGCTTTGACTTGGTTGTGTCACCACT
TGTCCATGCCATGTCTGAACCCAACTTCATGGAAATCCCACCGCAGGTGCCAGTTAAGCGGAAA
TATCTCTTCACTTTCCAGGGTGAGAAGATTGAGTCTCTAAGATCTAGCCTTCAGGAGGCCCGTT
CCTTTGAGGAAGAAATGGAGGGTGACCCTCCGGCCGACTATGATGATCGAATCATTGCCACCCT
CAAGGCCGTACAGGACAGCAAGCTAGATCAGGTGCTGGTAGAATTTACTTGCAAAAACCAGCCA
AAGCCCAGTCTGCCTACTGAGTGGGCACTGTGTGGGGAGCGGGAGGACCGGCTAGAGTTACTGA
AGCTCTCCACCTTCGCCCTCATCATCACTCCCGGGGACCCGAGCCTGCTTATCTCATCTGGCTG
TGCAACACGGCTCTTTGAAGCCTTGGAGGTGGGAGCTGTGCCTGTTGTCCTTGGGGAGCAGGTG
CAGCTTCCGTACCACGACATGCTACAATGGAATGAGGCCGCCCTAGTGGTGCCCAAGCCTCGTG
TTACAGAGGTTCACTTCCTGTTACGAAGTCTGTCAGACAGTGATCTGTTGGCTATGAGGCGGCA
AGGCCGCTTTCTCTGGGAGACCTACTTCTCCACCGCTGACAGTATTTTTAATACCGTGCTGGCC
ATGATTAGGACTCGAATTCAGATCCCAGCTGCTCCCATCCGGGAAGAGGTAGCAGCTGAGATCC
CCCATCGTTCAGGCAAGGCAGCTGGTACTGACCCCAACATGGCTGACAATGGGGACCTGGACCT
GGGGCCGGTAGAGACAGAGCCGCCCTATGCCTCACCTAAATACCTCCGTAATTTCACTCTGACT
GTCACTGACTGTTACCGCAGCTGGAACTCCGCACCCGGACCTTTCCATCTTTTTCCACACACAC
CCTTTGACCCTGTGCTGCCCTCTGAGGCCAAATTCCTGGGCTCAGGGACTGGATTTCGGCCCAT
CGGTGGTGGGGCTGGGGGCTCTGGCAAGGAGTTCCAGGCAGCGCTTGGAGGCAATGTCCAGCGG
GAGCAGTTCACAGTTGTGATGCTGACCTACGAGCGGGAGGAAGTGCTCATGAACTCCCTGGAGA
GGCTCAATGGCCTCCCCTACCTGAACAAGGTAGTGGTGGTGTGGAACTCTCCCAAGCTGCCCTC
GGAGGACCTTTTGTGGCCAGACATTGGTGTCCCCATCATGGTTGTCCGTACTGAGAAGAACAGT
TTGAACAATCGGTTCTTGCCCTGGAATGAGATAGAGACAGAGGCAATATTGTCCATCGATGACG
ATGCCCACCTCCGCCATGATGAAATCATGTTCGGGTTTCGGGTGTGGAGAGAGGCGCGTGATCG
CATTGTGGGGTTCCCTGGCCGGTACCATGCGTGGGACATCCCTCACCAGTCCTGGCTCTACAAC
TCCAACTACTCCTGTGAGCTGTCCATGGTGCTGACGGGTGCTGCCTTCTTTCACAAGTATTACG
CCTACCTGTATTCTTATGTGATGCCCCAGGCCATCCGAGACATGGTGGATGAGTATATCAACTG
TGAGGATATCGCCATGAACTTCCTTGTCTCCCACATCACACGGAAGCCCCCCATCAAGGTGACA
TCGAGGTGGACTTTTCGATGCCCGGGGTGCCCTCAGGCCCTGTCCCACGATGACTCTCACTTTC
ATGAGCGGCACAAGTGTATCAACTTTTTTGTCAAGGTGTACGGCTATATGCCTCTCCTGTACAC
ACAGTTTAGGGTGGACTCTGTGCTCTTCAAGACCCGCCTGCCCCATGACAAGACCAAGTGCTTC
AAGTTCATCTAGGGCCTTGCCAGTTCTGAGGAGAAGACAGTGAGCAGAGTGAGGGGAGTCACCC
CCAAGGTTCCCAAGGTGTTGAAGGTCCTTGGGGACATCGTGGGCAGGGCCCAGGCCCTTTGCTT
GGAGAAGAGCAGGGAGAGTAGAAAGGGATGGCTGTCTTTATTTTGAAGTCAGCCGCACTGGGCC
TGGAATCCTGGTCAGCAGACTCAGGGCACCGACTAATGGCGAACACTGAGGACTGTTCATGAGC
CCGGGACAGCTGGTTCCCGGTTTTTAAATTCAGAACAGCATTTACTATTTAAAGAGAGAGTTTC
ACATCTGCCATCCAAGGCTTATTTATATGTGCGTATATGTACACACATATGTGTATATACATGT
ATATGCACGCACACACACACACACACACACACACACACACACACACACACACAGCGGCCGCG

hide sequence

RefSeq Acc Id:

XM_006252206 ⟹ XP_006252268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,885 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,339,196 (-)	NCBI
Rnor_6.0	15	48,420,419 - 48,465,169 (-)	NCBI
Rnor_5.0	15	52,167,241 - 52,307,996 (-)	NCBI

Sequence:

show sequence

TAAGCATTCATTCAGACCCGCCCTTTATTTGCAGCTAAATATTTAAAAGTGTTCAGAACTGTGG
ATCATTGCCGATACAGGGCTTCAGAACTGTGGGTCATTGCTAGCACAGGGTACCTCATCTGGGC
ATGGGCTTATTTTTAGGTTGAGGGTTACCCAGATTAGTGGGGCCCCTCCTCAAAGCCGAGCTCC
TGACCCTTCTCACAGTCACCGGCACCCAGCCTGCTCCTGGGATTCCGAAGGGCAGAGCCCACTG
CCCGCTCCGCCTGTGCCTCCGGACGCGTCCGGAAAGTTACGAACAGATCGGTGCTTTCCTCTCG
GTAGTAAACGCAGGTTCGGCGGTTTCCGGCCCAGCTTCGGCAAGTTCCGCCGGCGCCGGTCGGA
AATGGCCGCCGGCCGGCAGGGGGAGCGGAGGATCCGGCGCGGCCTGGGAGGCTTGCAGCCGGCG
GCCAGAGCGGCTTGTGGGAAGCGGACTTTCACTCAGGCAACAGCGGTGGCTCGTCCCTGACTGG
AAGCCGTAAAGAAACCTGTAAATCTGAAGAGAGTGGTGGCTTTAATCGTGCATTAGGACAGCCA
TGGAGGATGTGCTTAGGGGACATGGGACCTTCTGCCTTAGGAGAACAAGCACTGATGACCATTA
GTTCAGGCAATCCTGTGCTGAGGCATATGCGACTACATAAGCCAGAGAGAGGAAGAGTGCTGCC
AGGCCTGATTGCTGGTAGTGACCTGGAGGACGGGGCTGGCATTTCAAACGGCCAGTTGTTTTTC
CCAGTCACTGCATAACTTATAGAAGCTATGCATACCGGCTAGCCAACAAAGCCAAGGAACAAAA
GCTATGGCAGTTGAAGCGGTCCCTGGGAGTCTAGGGCTTTTCCCCTGGATTTTAACACCACGGA
TCTCTTTCTTTTCATCCCATCAGCAATGTGGTACCTCCTCCTATTTGATGACAACAGCCGATAC
TTAGGATTTAGAGACCAAGTTAGAGACCTGAGCCACAGCGAGGAAAATGAAATTCCCATTTTAT
TTGGTGCCTTGTGCAGGGAGCACACTGATCCCTCTAGAACCTTGTGTGTGAAAAAGAGGTCGAG
TTTTGTCAAACAGACTCATGGTTATGGCAAGTGATCCGACGTGACCAGAGTGGGCAAGAGCCAC
AGTGAACTCATGACAGGCTATACCATGTTGCGGAATGGGGGAGTGGGGAACGGTGGTCAGACCT
GTATGCTGCGCTGGTCCAACCGCATCCGGCTGACCTGGCTGAGTTTCACGCTGTTCATCATCCT
GGTCTTCTTCCCCCTCATTGCCCACTATTACCTCACCACTCTGGATGAGGCAGATGAGGCCGGC
AAGCGCATCTTTGGCCCCCGGGCTGGCAACGAGCTCTGTGAGGTAAAGCACGTCCTAGATCTTT
GTCGGATCCGCGAGTCTGTGAGCGAAGAGCTTCTACAGCTAGAAGCCAAGCGGCAGGAGCTGAA
CAGCGAGATTGCCAAGCTAAACCTCAAGATTGAAGCCTGTAAGAAGAGTATAGAGAACGCCAAG
CAGGACCTGCTGCAGCTCAAGAATGTCATTAGCCAGACAGAGCACTCCTACAAGGAGCTGATGG
CCCAGAACCAGCCCAAACTGTCACTGCCCATCCGGCTGCTCCCTGAGAAGGATGACGCTGGCCT
TCCACCCCCCAAGGTCACTCGGGGTTGCCGGCTACACAACTGCTTCGATTACTCTCGTTGCCCT
CTGACGTCTGGCTTTCCTGTCTTCGTCTATGACAGTGACCAGTTTGCCTTTGGGAGCTACCTGG
ACCCTTTGGTCAAGCAGGCTTTTCAGGCTACAGTGAGAGCCAACGTTTATGTTACAGAAAATGC
AGCCATCGCCTGCCTGTATGTGGTGTTAGTGGGAGAGATACAAGAGCCCGCTGTGCTGCAGCCT
GCCGACCTTGAGAAGCAGCTGCATTCTCTGCCACACTGGAGGACAGACGGACACAACCATGTCA
TCATCAATCTGTCCCGGAAGTCAGACACACAAAATTTACTGTACAATGTCAGTACAGGTCGGGC
CATGGTGGCCCAGTCTACCTTCTATGCTGCCCAGTACAGAGCTGGCTTTGACTTGGTTGTGTCA
CCACTTGTCCATGCCATGTCTGAACCCAACTTCATGGAAATCCCACCGCAGGTGCCAGTTAAGC
GGAAATATCTCTTCACTTTCCAGGGTGAGAAGATTGAGTCTCTAAGATCTAGCCTTCAGGAGGC
CCGTTCCTTTGAGGAAGAAATGGAGGGTGACCCTCCGGCCGACTATGATGATCGAATCATTGCC
ACCCTCAAGGCCGTACAGGACAGCAAGCTAGATCAGGTGCTGGTAGAATTTACTTGCAAAAACC
AGCCAAAGCCCAGTCTGCCTACTGAGTGGGCACTGTGTGGGGAGCGGGAAGACCGGCTAGAGTT
ACTGAAGCTCTCCACCTTCGCCCTCATCATCACTCCCGGGGACCCGAGCCTGCTTATCTCATCT
GGCTGTGCAACACGGCTCTTTGAAGCCTTGGAGGTGGGAGCTGTGCCTGTTGTCCTTGGGGAGC
AGGTGCAGCTTCCGTACCACGACATGCTACAATGGAATGAGGCCGCCCTAGTGGTGCCCAAGCC
TCGTGTTACAGAGGTTCACTTCCTGTTACGAAGTCTGTCAGACAGTGATCTGTTGGCTATGAGG
CGGCAAGGCCGCTTTCTCTGGGAGACCTACTTCTCCACCGCTGACAGTATTTTTAATACCGTGC
TGGCCATGATTAGGACTCGAATTCAGATCCCAGCTGCTCCCATCCGGGAAGAGGTAGCAGCTGA
GATCCCCCATCGTTCAGGCAAGGCAGCTGGTACTGACCCCAACATGGCTGACAATGGGGACCTG
GACCTGGGGCCGGTAGAGACAGAGCCGCCCTATGCCTCACCTAAATACCTCCGTAATTTCACTC
TGACTGTCACTGACTGTTACCGCAGCTGGAACTCCGCACCCGGACCTTTCCATCTTTTTCCACA
CACACCCTTTGACCCTGTGCTGCCCTCTGAGGCCAAATTCCTGGGCTCAGGGACTGGATTTCGG
CCCATCGGTGGTGGGGCTGGGGGCTCTGGCAAGGAGTTCCAGGCAGCGCTTGGAGGCAATGTCC
AGCGGGAGCAGTTCACAGTTGTGATGCTGACCTACGAGCGGGAGGAAGTGCTCATGAACTCCCT
GGAGAGGCTCAATGGCCTCCCCTACCTGAACAAGGTAGTGGTGGTGTGGAACTCTCCCAAGCTG
CCCTCGGAGGACCTTTTGTGGCCAGACATTGGTGTCCCCATCATGGTTGTCCGTACTGAGAAGA
ACAGTTTGAACAATCGGTTCTTGCCCTGGAATGAGATAGAGACAGAGGCAATATTGTCCATCGA
TGACGATGCCCACCTCCGCCATGATGAAATCATGTTCGGGTTTCGGGTGTGGAGAGAGGCGCGT
GATCGCATTGTGGGGTTCCCTGGCCGGTACCATGCGTGGGACATCCCTCACCAGTCCTGGCTCT
ACAACTCCAACTACTCCTGTGAGCTGTCCATGGTGCTGACGGGTGCTGCCTTCTTTCACAAGTA
TTACGCCTACCTGTATTCTTATGTGATGCCCCAGGCCATCCGAGACATGGTGGATGAGTATATC
AACTGTGAGGATATCGCCATGAACTTCCTTGTCTCCCACATCACACGGAAGCCCCCCATCAAGG
TGACATCGAGGTGGACTTTTCGATGCCCGGGGTGCCCTCAGGCCCTGTCCCACGATGACTCTCA
CTTTCATGAGCGGCACAAGTGTATCAACTTTTTTGTCAAGGTGTACGGCTATATGCCTCTCCTG
TACACACAGTTTAGGGTGGACTCTGTGCTCTTCAAGACCCGCCTGCCCCATGACAAGACCAAGT
GCTTCAAGTTCATCTAGGGCCTTGCCAGTTCTGAGGAGAAGACAGTGAGCAGAGTGAGGGGAGT
CACCCCCAAGGTTCCCAAGGTGTTGAAGGTCCTTGGGGACATCGTGGGGCAGGGCCCAGGCCCT
TTGCTTGGAGAAGAGCAGGGAGAGTAGAAAGGGATGGCTGTCTTTATTTTGAAGTCAGCCGCAC
TGGGCCTGGAATCCTGGTCAGCAGACTCAGGGCACCGACTAATGGCGAACACTGAGGACTGTTC
ATGAGCCCGGGACAGCTGGTTCCCGGTTTTTAAATTCAGAACAGCATTTACTATTTAAAGAGAG
AGTTTCACATCTGCCATCCAAGGCTTATTTATATGTGCGTATATGTACACACATATGTGTATAT
ACATGTATATGCACGCACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACATTTTGGTGGGTCAGGGTGCACCTGAAGTTTCTGCCAATCTCTCCAAGGGAGGG
ACCTACCCAGCCATGTATTAGAGAGGGTCCTGGCCCTGCATTACCTGGACAGTCATTTGCGGCC
CCACCCTCCTGGGGACACTGGCTGCAGAAGAAATAAGCGGGATGGCCCTGGCCTAGGCTGGATC
TCCTGACCCATTCCAGCCTCTTCCCAATGCCTCCATGCTGCTCTCACAGCTTCTCCTGCTGGGG
GCTGCACAGTGGGGACCGGCGCGCTCCAGACGCTCTGAAGGGTTGGAATCAGTCAGCACTCACG
TGTCACCCGGCTTCCATTCTTTCTTGTGTTTGAGAAAGAATGAGGAGGCAAACAGTAAGGCAGA
AATGAGACCTGTACTTAGCCCACCCTCTGGGTGACCCTGGTGCAAGGTGCAGGGTGCTGGTGGT
TGGTTCCCATAGTACTTGTCTCTCTCAGAGGAGACAGCAGGAATTTAGCAGGCTGGCTGGGAGC
TCATCTGGTGTAGAACCAGCCTGTGTCCTTTGAGGCTTCCAGAGTCTTACTGCAAGGCATGCGC
CTTGGAAAGAACACCTAGGTGAAATTCACCTTCCCTCTTGTGTCTAGACTTCCATCCTGTACCT
GTGGGGTTTAGACCCCAATGCCATGTTGGCTATAGGAAGCCCCGCCTTCAAGGTCTGGGGTGTG
CTAGAACCTGGAGGCTGATTTGCTGGGTGAGTCCTAGTCTGCGGTGGACGTTAACAGGCATTCA
CCCCAAGTTACCACTTTCCATGGCTGTTGATGGGCTGAAAGTGAAGTAAGCTACCTTGGGGCAC
AGTGGCCGTGGGAAACTGTTGTGTCAGGGATTCGGCCTGCGACTTGTCCCCCAGCCCCAGCGAC
TGAATCAGAGCTCAGTCTGTCCTGGTCATGCACCTGCCTTAAGCCAGTCCCGTCTTCTTAGGCC
CTGACTGTGTGCTGCTGCTTGGGGTCCTCTCTGCCTGCTGTCCTGACTTCTCTCTAGATCCCTC
CTGCAGTGGGGCTGGCACGGCCCCTGGGAGCCCCTCAGCCCAGCAGGGCCAGGCCGCTGCAGAA
TTTCCACTGAGTCTTCTGGAACCTCATACCAGGGCTGCCGGGGACATTTGGTTCTTGGCAACTC
AGTGATGGAGTGTCCTTCCCCGACCGTCTGTCCTCTCACCAGTCCTTGTAGCAGTAGCCCTCTT
CCCTCAGGGGAGCCAAAGAGTGTGGTGTTTTTTGCGCTGAATATGTGGCTGCTGTTTTATCTTT
TTCTTTCCTTTCCCAGTATTGGGATGGAAGCCAGAGCTGTGGGTGGACTTCCTGACAATCGCTC
TGCCACGAGCCCCGTCCCTGTCGTCTTGTTTCTTTCCATTGAGAGGTTGTAAATGGTGCTGTGG
CACCCAATAAGAAAGTCCGTCTCTGTGGTAGGACCCCCTTTGTGGGGCACTAAAAGCTATGGCT
CCCCCATGGGTATCACTGAAATGCGTTTGCGGGAGAGCAATGTCAGAGTGTCCAATGGGATAGC
ACCTCTGAGCCTGGTGGGAACGCTGACTGAAGGACCCAGCAGCAAGCATGGACAGCGATGACTG
CACCTGAGGGACTCTGCCGAGGCAAGAAGCAGAGAAAGTTGGACCCTGCTTGTGATTTGGGTTG
GGTTAGGGGACACGCTTGGAAATGACTGTGCCAGTACACGTGTGGGGAACCTGCTTGGTGTTTG
ATGCTGCTCATCATGGTCACCTCCTAGTGCGTATTCCTAACAGGTCACACTCGGCTAGTCTTAG
CTCCGGTGCCAGGACAGCTTTGTTTTCCAGTTGCTCTTTATCTTGAGGTCCAGGGCCACCCACA
GAGTGACCGTCTCCTAGGGTGCCTCCAGCCGGTGGACCACCTCTAATGCTCCTGTCTGGGGTGG
CCTTGTTAGCGAACATGGAGCTGGGGGTGGGGCTGCCCGGGGTGGCTCTGATAACTTGTCCATC
TGTCTGCCCCTTCCAAACCATGAGCACAAAGGTCTTACATTGGATTTTTGTAAAAAAACAAAAT
AAATGGAGACTTTAACTCAA

hide sequence

RefSeq Acc Id:

XM_039093618 ⟹ XP_038949546

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,887 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,339,196 (-)	NCBI

RefSeq Acc Id:

XM_039093619 ⟹ XP_038949547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,559,760 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,384,064 (-)	NCBI

RefSeq Acc Id:

XM_039093620 ⟹ XP_038949548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,887 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,339,196 (-)	NCBI

RefSeq Acc Id:

XM_039093622 ⟹ XP_038949550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,559,751 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,384,086 (-)	NCBI

RefSeq Acc Id:

XM_039093623 ⟹ XP_038949551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,887 (-)	NCBI
mRatBN7.2	15	39,294,033 - 39,339,198 (-)	NCBI

RefSeq Acc Id:

XM_063274596 ⟹ XP_063130666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,887 (-)	NCBI

RefSeq Acc Id:

XM_063274597 ⟹ XP_063130667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	43,469,293 - 43,514,887 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418278	(Get FASTA)	NCBI Sequence Viewer
	NP_001418279	(Get FASTA)	NCBI Sequence Viewer
	NP_001418280	(Get FASTA)	NCBI Sequence Viewer
	NP_001418281	(Get FASTA)	NCBI Sequence Viewer
	NP_001418282	(Get FASTA)	NCBI Sequence Viewer
	NP_001418283	(Get FASTA)	NCBI Sequence Viewer
	NP_001418284	(Get FASTA)	NCBI Sequence Viewer
	NP_064482	(Get FASTA)	NCBI Sequence Viewer
	XP_006252268	(Get FASTA)	NCBI Sequence Viewer
	XP_038949546	(Get FASTA)	NCBI Sequence Viewer
	XP_038949547	(Get FASTA)	NCBI Sequence Viewer
	XP_038949548	(Get FASTA)	NCBI Sequence Viewer
	XP_038949550	(Get FASTA)	NCBI Sequence Viewer
	XP_038949551	(Get FASTA)	NCBI Sequence Viewer
	XP_063130666	(Get FASTA)	NCBI Sequence Viewer
	XP_063130667	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA92895	(Get FASTA)	NCBI Sequence Viewer
	EDL85349	(Get FASTA)	NCBI Sequence Viewer
	EDL85350	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073791
	ENSRNOP00000073791.3

RefSeq Acc Id:

NP_064482 ⟸ NM_020097

- UniProtKB:

A0A0G2K6F4 (UniProtKB/TrEMBL), F7F308 (UniProtKB/TrEMBL), Q9JMA8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGYTMLRNGGVGNGGQTCMLRWSNRIRLTWLSFTLFIILVFFPLIAHYYLTTLDEADEAGKRI
FGPRAGNELCEVKHVLDLCRIRESVSEELLQLEAKRQELNSEIAKLNLKIEACKKSIENAKQDL
LQLKNVISQTEHSYKELMAQNQPKLSLPIRLLPEKDDAGLPPPKVTRGCRLHNCFDYSRCPLTS
GFPVFVYDSDQFAFGSYLDPLVKQAFQATVRANVYVTENAAIACLYVVLVGEIQEPAVLQPADL
EKQLHSLPHWRTDGHNHVIINLSRKSDTQNLLYNVSTGRAMVAQSTFYAAQYRAGFDLVVSPLV
HAMSEPNFMEIPPQVPVKRKYLFTFQGEKIESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK
AVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPSLLISSGCA
TRLFEALEVGAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQG
RFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEVAAEIPHRSGKAAGTDPNMADNGDLDLG
PVETEPPYASPKYLRNFTLTVTDCYRSWNSAPGPFHLFPHTPFDPVLPSEAKFLGSGTGFRPIG
GGAGGSGKEFQAALGGNVQREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKLPSE
DLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRI
VGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCE
DIAMNFLVSHITRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQ
FRVDSVLFKTRLPHDKTKCFKFI

hide sequence

RefSeq Acc Id:	XP_006252268 ⟸ XM_006252206
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6F4 (UniProtKB/TrEMBL), F7F308 (UniProtKB/TrEMBL), Q9JMA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGYTMLRNGGVGNGGQTCMLRWSNRIRLTWLSFTLFIILVFFPLIAHYYLTTLDEADEAGKRI FGPRAGNELCEVKHVLDLCRIRESVSEELLQLEAKRQELNSEIAKLNLKIEACKKSIENAKQDL LQLKNVISQTEHSYKELMAQNQPKLSLPIRLLPEKDDAGLPPPKVTRGCRLHNCFDYSRCPLTS GFPVFVYDSDQFAFGSYLDPLVKQAFQATVRANVYVTENAAIACLYVVLVGEIQEPAVLQPADL EKQLHSLPHWRTDGHNHVIINLSRKSDTQNLLYNVSTGRAMVAQSTFYAAQYRAGFDLVVSPLV HAMSEPNFMEIPPQVPVKRKYLFTFQGEKIESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK AVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPSLLISSGCA TRLFEALEVGAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQG RFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEVAAEIPHRSGKAAGTDPNMADNGDLDLG PVETEPPYASPKYLRNFTLTVTDCYRSWNSAPGPFHLFPHTPFDPVLPSEAKFLGSGTGFRPIG GGAGGSGKEFQAALGGNVQREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKLPSE DLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRI VGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCE DIAMNFLVSHITRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQ FRVDSVLFKTRLPHDKTKCFKFI hide sequence

Ensembl Acc Id:

ENSRNOP00000073791 ⟸ ENSRNOT00000077197

Ensembl Acc Id:

ENSRNOP00000018583 ⟸ ENSRNOT00000018583

RefSeq Acc Id:	XP_038949550 ⟸ XM_039093622
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949547 ⟸ XM_039093619
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949551 ⟸ XM_039093623
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949546 ⟸ XM_039093618
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949548 ⟸ XM_039093620
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063130667 ⟸ XM_063274597
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063130666 ⟸ XM_063274596
- Peptide Label:	isoform X1

Protein Domains

Exostosin GT47 Glycosyl transferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JMA8-F1-model_v2	AlphaFold	Q9JMA8	1-919	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62065	AgrOrtholog
BioCyc Gene	G2FUF-13365	BioCyc
BioCyc Pathway	PWY-6558 [heparan sulfate biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-6558	BioCyc
Ensembl Genes	ENSRNOG00000013581	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077197	ENTREZGENE
	ENSRNOT00000077197.3	UniProtKB/TrEMBL
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	Exostosin	UniProtKB/TrEMBL
	Exostosin_GT47	UniProtKB/TrEMBL
	HexNAc_Trfase_a	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
KEGG Report	rno:56819	UniProtKB/TrEMBL
NCBI Gene	Extl3	ENTREZGENE
PANTHER	ACETYLGLUCOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	EXOSTOSIN LIKE GLYCOSYLTRANSFERASE 3	UniProtKB/TrEMBL
Pfam	Exostosin	UniProtKB/TrEMBL
	Glyco_transf_64	UniProtKB/TrEMBL
PhenoGen	Extl3	PhenoGen
RatGTEx	ENSRNOG00000013581	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/TrEMBL
TIGR	TC226254
UniProt	A0A0G2K6F4	ENTREZGENE, UniProtKB/TrEMBL
	F7F308	ENTREZGENE, UniProtKB/TrEMBL
	Q9JMA8	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Extl3	exostosin-like glycosyltransferase 3	LOC102549615	exostosin-like 3-like	Data merged from RGD:7558291	737654	PROVISIONAL
2013-12-17	LOC102549615	exostosin-like 3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-03-06	Extl3	exostosin-like glycosyltransferase 3	Extl3	exostoses (multiple)-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Extl3	exostoses (multiple)-like 3			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	919 amino acids	61576

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways