Symbol:
Il17b
Name:
interleukin 17B
RGD ID:
620614
Description:
Predicted to enable cytokine activity. Predicted to be involved in inflammatory response and signal transduction. Predicted to act upstream of or within positive regulation of cytokine production involved in inflammatory response. Predicted to be located in extracellular space. Orthologous to human IL17B (interleukin 17B); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4,6-trinitrotoluene.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
interleukin-17B
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
IL17B (interleukin 17B)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):
Il17b (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Il17b (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
IL17B (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
IL17B (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Il17b (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
IL17B (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
IL17B (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Il17b (interleukin 17B)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
CDH24 (cadherin 24)
HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
IL17B (interleukin 17B)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Il17b (interleukin 17B)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
il17b
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 18 57,411,532 - 57,415,903 (+) NCBI GRCr8 mRatBN7.2 18 55,141,194 - 55,145,565 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 18 55,141,194 - 55,145,565 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 18 57,234,781 - 57,239,079 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 18 57,949,431 - 57,953,743 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 18 55,765,055 - 55,769,426 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 18 57,011,575 - 57,016,009 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 18 57,011,575 - 57,016,009 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 18 56,240,488 - 56,244,922 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 18 57,665,293 - 57,669,668 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 18 57,739,647 - 57,741,775 (+) NCBI Celera 18 53,290,941 - 53,295,289 (+) NCBI Celera Cytogenetic Map 18 q12.1 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Il17b Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of IL17B mRNA CTD PMID:33387578 Il17b Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2 more ... CTD PMID:32109520 Il17b Rat 2,4,6-trinitrotoluene affects expression EXP 6480464 Trinitrotoluene affects the expression of IL17B mRNA CTD PMID:21346803 Il17b Rat 2,4-dinitrotoluene affects expression EXP 6480464 2 and 4-dinitrotoluene affects the expression of IL17B mRNA CTD PMID:21346803 Il17b Rat 2,6-dinitrotoluene affects expression EXP 6480464 2 and 6-dinitrotoluene affects the expression of IL17B mRNA CTD PMID:21346803 Il17b Rat 4,4'-sulfonyldiphenol affects methylation ISO Il17b (Mus musculus) 6480464 bisphenol S affects the methylation of IL17B gene CTD PMID:31683443 Il17b Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of IL17B mRNA CTD PMID:24780913 Il17b Rat acetamide increases expression EXP 6480464 acetamide results in increased expression of IL17B mRNA CTD PMID:31881176 Il17b Rat Aflatoxin B2 alpha decreases methylation ISO IL17B (Homo sapiens) 6480464 aflatoxin B2 results in decreased methylation of IL17B intron CTD PMID:30157460 Il17b Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of IL17B mRNA CTD PMID:16483693 Il17b Rat benzo[a]pyrene increases methylation ISO IL17B (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of IL17B promoter CTD PMID:27901495 Il17b Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of IL17B mRNA CTD PMID:25181051 more ... Il17b Rat cyclosporin A increases expression ISO IL17B (Homo sapiens) 6480464 Cyclosporine results in increased expression of IL17B mRNA CTD PMID:25562108 Il17b Rat decabromodiphenyl ether increases expression EXP 6480464 decabromobiphenyl ether results in increased expression of IL17B mRNA CTD PMID:23914054 Il17b Rat ferulic acid multiple interactions ISO Il17b (Mus musculus) 6480464 ferulic acid inhibits the reaction [Imiquimod results in decreased expression of IL17B mRNA] CTD PMID:31054998 Il17b Rat fipronil decreases expression EXP 6480464 fipronil results in decreased expression of IL17B mRNA CTD PMID:34044035 Il17b Rat fulvestrant decreases methylation ISO IL17B (Homo sapiens) 6480464 Fulvestrant results in decreased methylation of IL17B gene CTD PMID:31601247 Il17b Rat genistein decreases expression EXP 6480464 Genistein results in decreased expression of IL17B mRNA CTD PMID:17341692 Il17b Rat genistein decreases expression ISO Il17b (Mus musculus) 6480464 Genistein results in decreased expression of IL17B mRNA CTD PMID:32186404 Il17b Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of IL17B mRNA CTD PMID:33387578 Il17b Rat GW 4064 multiple interactions ISO Il17b (Mus musculus) 6480464 GW 4064 promotes the reaction [NR1H4 protein binds to IL17B gene] CTD PMID:20091679 Il17b Rat imiquimod decreases expression ISO Il17b (Mus musculus) 6480464 Imiquimod results in decreased expression of IL17B mRNA CTD PMID:31054998 Il17b Rat imiquimod multiple interactions ISO Il17b (Mus musculus) 6480464 ferulic acid inhibits the reaction [Imiquimod results in decreased expression of IL17B mRNA] CTD PMID:31054998 Il17b Rat N-methyl-N-nitrosourea increases expression EXP 6480464 Methylnitrosourea results in increased expression of IL17B mRNA CTD PMID:17341692 Il17b Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of IL17B mRNA CTD PMID:33387578 Il17b Rat paraquat increases expression ISO Il17b (Mus musculus) 6480464 Paraquat results in increased expression of IL17B mRNA CTD PMID:22938100 Il17b Rat perfluorohexanesulfonic acid multiple interactions ISO IL17B (Homo sapiens) 6480464 [perfluorooctanoic acid co-treated with perfluorooctane sulfonic acid co-treated with perfluorohexanesulfonic acid] results in increased expression of IL17B mRNA CTD PMID:38603627 Il17b Rat perfluorooctane-1-sulfonic acid multiple interactions ISO IL17B (Homo sapiens) 6480464 [perfluorooctanoic acid co-treated with perfluorooctane sulfonic acid co-treated with perfluorohexanesulfonic acid] results in increased expression of IL17B mRNA CTD PMID:38603627 Il17b Rat perfluorooctanoic acid multiple interactions ISO IL17B (Homo sapiens) 6480464 [perfluorooctanoic acid co-treated with perfluorooctane sulfonic acid co-treated with perfluorohexanesulfonic acid] results in increased expression of IL17B mRNA CTD PMID:38603627 Il17b Rat rotenone increases expression ISO IL17B (Homo sapiens) 6480464 Rotenone results in increased expression of IL17B mRNA CTD PMID:29955902 Il17b Rat silicon dioxide decreases expression ISO IL17B (Homo sapiens) 6480464 Silicon Dioxide analog results in decreased expression of IL17B mRNA CTD PMID:25895662 Il17b Rat sodium arsenite decreases expression ISO Il17b (Mus musculus) 6480464 sodium arsenite results in decreased expression of IL17B mRNA CTD PMID:37682722 Il17b Rat sterigmatocystin increases expression ISO Il17b (Mus musculus) 6480464 Sterigmatocystin results in increased expression of IL17B mRNA CTD PMID:19818335 Il17b Rat sunitinib increases expression ISO IL17B (Homo sapiens) 6480464 Sunitinib results in increased expression of IL17B mRNA CTD PMID:31533062 Il17b Rat thioacetamide decreases expression EXP 6480464 Thioacetamide results in decreased expression of IL17B mRNA CTD PMID:34492290 Il17b Rat titanium dioxide decreases methylation ISO Il17b (Mus musculus) 6480464 titanium dioxide results in decreased methylation of IL17B gene CTD PMID:35295148 Il17b Rat TMC-120A decreases expression ISO Il17b (Mus musculus) 6480464 TMC 120A results in decreased expression of IL17B mRNA CTD PMID:19818335 Il17b Rat trichloroethene increases expression EXP 6480464 Trichloroethylene results in increased expression of IL17B mRNA CTD PMID:33387578 Il17b Rat urethane decreases expression ISO IL17B (Homo sapiens) 6480464 Urethane results in decreased expression of IL17B mRNA CTD PMID:28818685 Il17b Rat valproic acid affects expression ISO Il17b (Mus musculus) 6480464 Valproic Acid affects the expression of IL17B mRNA CTD PMID:17963808 Il17b Rat vinclozolin decreases expression EXP 6480464 vinclozolin results in decreased expression of IL17B mRNA CTD PMID:18629315
Imported Annotations - KEGG (archival)
2,3,7,8-tetrachlorodibenzodioxine (EXP) 2,3,7,8-Tetrachlorodibenzofuran (EXP) 2,4,6-trinitrotoluene (EXP) 2,4-dinitrotoluene (EXP) 2,6-dinitrotoluene (EXP) 4,4'-sulfonyldiphenol (ISO) 6-propyl-2-thiouracil (EXP) acetamide (EXP) Aflatoxin B2 alpha (ISO) ammonium chloride (EXP) benzo[a]pyrene (ISO) bisphenol A (EXP) cyclosporin A (ISO) decabromodiphenyl ether (EXP) ferulic acid (ISO) fipronil (EXP) fulvestrant (ISO) genistein (EXP,ISO) gentamycin (EXP) GW 4064 (ISO) imiquimod (ISO) N-methyl-N-nitrosourea (EXP) paracetamol (EXP) paraquat (ISO) perfluorohexanesulfonic acid (ISO) perfluorooctane-1-sulfonic acid (ISO) perfluorooctanoic acid (ISO) rotenone (ISO) silicon dioxide (ISO) sodium arsenite (ISO) sterigmatocystin (ISO) sunitinib (ISO) thioacetamide (EXP) titanium dioxide (ISO) TMC-120A (ISO) trichloroethene (EXP) urethane (ISO) valproic acid (ISO) vinclozolin (EXP)
Il17b (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 18 57,411,532 - 57,415,903 (+) NCBI GRCr8 mRatBN7.2 18 55,141,194 - 55,145,565 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 18 55,141,194 - 55,145,565 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 18 57,234,781 - 57,239,079 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 18 57,949,431 - 57,953,743 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 18 55,765,055 - 55,769,426 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 18 57,011,575 - 57,016,009 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 18 57,011,575 - 57,016,009 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 18 56,240,488 - 56,244,922 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 18 57,665,293 - 57,669,668 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 18 57,739,647 - 57,741,775 (+) NCBI Celera 18 53,290,941 - 53,295,289 (+) NCBI Celera Cytogenetic Map 18 q12.1 NCBI
IL17B (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 5 149,374,267 - 149,404,202 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 5 149,371,324 - 149,404,202 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 5 148,753,830 - 148,783,765 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 5 148,734,023 - 148,739,031 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 5 148,734,024 - 148,739,031 NCBI Celera 5 144,835,805 - 144,840,813 (-) NCBI Celera Cytogenetic Map 5 q32 NCBI HuRef 5 143,900,155 - 143,905,163 (-) NCBI HuRef CHM1_1 5 148,186,259 - 148,191,267 (-) NCBI CHM1_1 T2T-CHM13v2.0 5 149,909,114 - 149,939,047 (-) NCBI T2T-CHM13v2.0
Il17b (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 18 61,821,006 - 61,825,609 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 18 61,817,958 - 61,825,609 (+) Ensembl GRCm39 Ensembl GRCm38 18 61,687,935 - 61,692,538 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 18 61,684,887 - 61,692,538 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 18 61,847,589 - 61,852,191 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 18 61,813,304 - 61,817,906 (+) NCBI MGSCv36 mm8 Celera 18 62,970,900 - 62,975,972 (+) NCBI Celera Cytogenetic Map 18 E1 NCBI cM Map 18 34.67 NCBI
Il17b (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955415 5,041,375 - 5,047,449 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955415 5,037,270 - 5,047,405 (+) NCBI ChiLan1.0 ChiLan1.0
IL17B (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 4 144,604,299 - 144,607,629 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 5 142,743,848 - 142,763,536 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 5 144,800,664 - 144,842,788 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 5 150,811,055 - 150,840,085 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 5 150,811,055 - 150,815,930 (-) Ensembl panpan1.1 panPan2
IL17B (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 59,578,568 - 59,584,069 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 4 59,543,080 - 59,583,968 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 4 59,341,309 - 59,352,992 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 4 60,058,822 - 60,070,520 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 60,060,397 - 60,066,539 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 59,845,455 - 59,857,144 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 59,960,072 - 59,971,763 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 60,490,476 - 60,502,167 (+) NCBI UU_Cfam_GSD_1.0
Il17b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 143,908,738 - 143,915,822 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936504 5,482,972 - 5,489,899 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936504 5,485,009 - 5,489,788 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
IL17B (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 2 150,541,180 - 150,545,367 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 2 150,513,611 - 150,583,640 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 2 157,279,046 - 157,349,566 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
IL17B (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 23 51,992,877 - 52,001,280 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 23 51,993,258 - 51,998,043 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666034 25,748,904 - 25,753,870 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Il17b (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 34 Count of miRNA genes: 32 Interacting mature miRNAs: 34 Transcripts: ENSRNOT00000026679 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1331733 Bp233 Blood pressure QTL 233 3.97196 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 24796977 79788953 Rat 1358358 Sradr6 Stress Responsive Adrenal Weight QTL 6 2.49 adrenal gland mass (VT:0010420) both adrenal glands wet weight (CMO:0000164) 18 11944299 59330563 Rat 1331730 Scl27 Serum cholesterol level QTL 27 3.826 blood HDL cholesterol amount (VT:0000184) serum high density lipoprotein cholesterol level (CMO:0000361) 18 52292875 59796643 Rat 1331741 Bp232 Blood pressure QTL 232 3.59112 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 18 21372893 83213037 Rat 1331742 Bp228 Blood pressure QTL 228 3.88752 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 31359408 59796643 Rat 1298072 Cia26 Collagen induced arthritis QTL 26 3.6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 18 54709769 83828827 Rat 1331736 Bp227 Blood pressure QTL 227 2.791 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 18 46718763 59796643 Rat 1300125 Rf26 Renal function QTL 26 3.2 urine potassium amount (VT:0010539) urine potassium excretion rate (CMO:0000761) 18 52539863 65844950 Rat 6893683 Bw110 Body weight QTL 110 2.7 0.002 body mass (VT:0001259) body weight (CMO:0000012) 18 43345022 83828827 Rat 1331727 Bp237 Blood pressure QTL 237 3.053 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 31359408 61698465 Rat 9589041 Epfw12 Epididymal fat weight QTL 12 17.08 0.001 epididymal fat pad mass (VT:0010421) epididymal fat pad weight to body weight ratio (CMO:0000658) 18 46640675 83828827 Rat 8694432 Bw165 Body weight QTL 165 3.81 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 18 46640675 83828827 Rat 9589816 Gluco68 Glucose level QTL 68 7.25 0.001 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 18 29792965 74792965 Rat 1331774 Bp226 Blood pressure QTL 226 4.41065 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 31359408 59796643 Rat 61360 Eaey Experimental allergic encephalomyelitis QTL y 3 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis duration (CMO:0001424) 18 46988939 60377753 Rat 2300177 Bmd65 Bone mineral density QTL 65 19.7 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 18 28964853 73964853 Rat 1578667 Bss21 Bone structure and strength QTL 21 3.5 femur morphology trait (VT:0000559) femoral neck cortical cross-sectional area (CMO:0001702) 18 11791518 83218561 Rat 2303120 Mamtr8 Mammary tumor resistance QTL 8 0.001 mammary gland integrity trait (VT:0010552) mammary tumor growth rate (CMO:0000344) 18 31359408 83218561 Rat 12880368 Bw187 Body weight QTL 187 0.045 body mass (VT:0001259) body weight (CMO:0000012) 18 52539763 76104388 Rat 61367 Iddm4 Insulin dependent diabetes mellitus QTL 4 2.33 0.0074 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 18 38192455 83192455 Rat 2293658 Bmd23 Bone mineral density QTL 23 7.3 0.0001 femur mineral mass (VT:0010011) total volumetric bone mineral density (CMO:0001728) 18 51464733 63636873 Rat 1359020 Ppulsi2 Prepulse inhibition QTL 2 2.71 prepulse inhibition trait (VT:0003088) acoustic startle response measurement (CMO:0001519) 18 52292875 73997283 Rat 2299160 Iddm35 Insulin dependent diabetes mellitus QTL 35 2.79 blood glucose amount (VT:0000188) age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) 18 4207941 60377792 Rat 9590318 Scort22 Serum corticosterone level QTL 22 7.64 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 18 29792965 74792965 Rat 1331752 Bw27 Body weight QTL 27 2.963 body mass (VT:0001259) body weight (CMO:0000012) 18 52292875 65845095 Rat 1578661 Bss20 Bone structure and strength QTL 20 3.7 femur morphology trait (VT:0000559) femoral neck cross-sectional area (CMO:0001697) 18 11791518 83218561 Rat 1331754 Bp230 Blood pressure QTL 230 4.61609 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 29792965 74792965 Rat 12904069 Cm123 Cardiac mass QTL 123 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 18 52539763 76104388 Rat 1331798 Bp224 Blood pressure QTL 224 3.53873 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 31359408 59796643 Rat 12904070 Cm124 Cardiac mass QTL 124 0.01 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 18 52539763 76104388 Rat 2303584 Gluco55 Glucose level QTL 55 2 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 18 48520044 83828827 Rat 12904071 Am18 Aortic mass QTL 18 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 18 52539763 76104388 Rat 61383 Bp47 Blood pressure QTL 47 17.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 18 31271681 60377755 Rat 12904067 Cm122 Cardiac mass QTL 122 0.001 heart mass (VT:0007028) heart wet weight to body weight ratio (CMO:0002408) 18 52539763 76104388 Rat 1331806 Bp229 Blood pressure QTL 229 4.36484 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 46718763 57867167 Rat 2301417 Bp319 Blood pressure QTL 319 0.002 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 52539763 76104388 Rat 12904073 Kidm71 Kidney mass QTL 71 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 18 52539763 76104388 Rat 1331780 Bp238 Blood pressure QTL 238 3.269 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 46718763 59796643 Rat 738008 Hcar14 Hepatocarcinoma resistance QTL 14 4.3 liver integrity trait (VT:0010547) liver nonremodeling tumorous lesion number (CMO:0001462) 18 51464733 83218561 Rat 1331776 Bp225 Blood pressure QTL 225 2.829 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 18 31359408 59796643 Rat 6903359 Bp355 Blood pressure QTL 355 3.6 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 18 11944544 59796478 Rat 631518 Bw11 Body weight QTL 11 2.8 body mass (VT:0001259) body weight (CMO:0000012) 18 35870723 80870723 Rat 6903345 Bp349 Blood pressure QTL 349 3.9 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 46718935 59796478 Rat 2313082 Bss85 Bone structure and strength QTL 85 0.8 0.0001 long bone metaphysis morphology trait (VT:0000133) tibia midshaft total cross-sectional area (CMO:0001715) 18 14951337 59951337 Rat 6903347 Bp350 Blood pressure QTL 350 4.4 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 31359530 59796478 Rat 8694366 Abfw8 Abdominal fat weight QTL 8 6.38 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 18 46640675 83828827 Rat 6903349 Bp351 Blood pressure QTL 351 3.5 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 46718935 59796478 Rat 631509 Sald2 Serum aldosterone level QTL 2 2.9 blood aldosterone amount (VT:0005346) serum aldosterone level (CMO:0000487) 18 52539763 69140759 Rat 2300157 Bmd66 Bone mineral density QTL 66 13.1 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 18 28964853 73964853 Rat 738005 Anxrr11 Anxiety related response QTL 11 3.4 exploratory behavior trait (VT:0010471) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 18 30039813 75039813 Rat 6903351 Bp352 Blood pressure QTL 352 3.3 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 46718935 59796478 Rat 631274 Sprol1 Serum protein level QTL 1 5.3 blood total protein amount (VT:0005567) serum total protein level (CMO:0000661) 18 31393320 77209694 Rat 1358193 Emca2 Estrogen-induced mammary cancer QTL 2 1.6 mammary gland integrity trait (VT:0010552) post-insult time to mammary tumor formation (CMO:0000345) 18 18007599 63571040 Rat 2293704 Bss35 Bone structure and strength QTL 35 4.59 0.0002 femur strength trait (VT:0010010) femur midshaft polar moment of inertia (CMO:0001669) 18 28964853 73964853 Rat 2325839 Bp348 Blood pressure QTL 348 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 18 25570985 70570985 Rat 1600373 Mamtr6 Mammary tumor resistance QTL 6 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 18 19278901 83218561 Rat 2293708 Bss46 Bone structure and strength QTL 46 8.8 0.0001 lumbar vertebra morphology trait (VT:0010494) lumbar vertebra cortical cross-sectional area (CMO:0001690) 18 11791518 63636873 Rat 8694378 Bw157 Body weight QTL 157 3.59 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 18 29792965 74792965 Rat 1600375 Mcs22 Mammary carcinoma susceptibility QTL 22 3.3 mammary gland integrity trait (VT:0010552) mammary tumor growth rate (CMO:0000344) 18 52539763 63933058 Rat 2303571 Bw92 Body weight QTL 92 3 body mass (VT:0001259) body weight (CMO:0000012) 18 48520044 83828827 Rat 1598826 Anxrr20 Anxiety related response QTL 20 3.04 body movement coordination trait (VT:0005424) number of rearing movements in an experimental apparatus (CMO:0001752) 18 41432971 83828827 Rat 61429 Cia17 Collagen induced arthritis QTL 17 4.6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 18 31359408 70263868 Rat 7411719 Strs5 Sensitivity to stroke QTL 5 9.4 cerebrum integrity trait (VT:0010549) percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932) 18 49999958 65845095 Rat
BI274883
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 18 55,145,280 - 55,145,489 (+) MAPPER mRatBN7.2 Rnor_6.0 18 57,015,725 - 57,015,933 NCBI Rnor6.0 Rnor_5.0 18 56,244,638 - 56,244,846 UniSTS Rnor5.0 RGSC_v3.4 18 57,669,384 - 57,669,592 UniSTS RGSC3.4 Celera 18 53,295,005 - 53,295,213 UniSTS RH 3.4 Map 18 541.8 UniSTS Cytogenetic Map 18 q12.1 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
5
40
36
56
71
40
19
40
6
147
65
29
30
51
31
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Ensembl Acc Id:
ENSRNOT00000026679 ⟹ ENSRNOP00000026679
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 18 55,141,194 - 55,145,565 (+) Ensembl Rnor_6.0 Ensembl 18 57,011,575 - 57,016,009 (+) Ensembl
RefSeq Acc Id:
NM_053789 ⟹ NP_446241
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 18 57,411,532 - 57,415,903 (+) NCBI mRatBN7.2 18 55,141,194 - 55,145,565 (+) NCBI Rnor_6.0 18 57,011,575 - 57,016,009 (+) NCBI Rnor_5.0 18 56,240,488 - 56,244,922 (+) NCBI RGSC_v3.4 18 57,665,293 - 57,669,668 (+) RGD Celera 18 53,290,941 - 53,295,289 (+) RGD
Sequence:
GGGGTTCCTGGCCGGTGGCAGCTGCAGGCTGACTTAATGGGATGGACTGGCCACACAGCCTGCTCTTCCTTCTTGCCATCTCCATCTTCCTGGTGCCAAGCCAGCCCCGGAACACCAAAGGCAAAAGG AAGGGGCAAGGGAGGCCTGGCCCCTTGGCCCCTGGGCCTCACCAGGTGCCGCTGGACCTGGTGTCTCGAGTAAAGCCCTACGCCCGAATGGAAGAGTACGAGAGGAACCTTGGCGAGATGGTGGCCCA GCTGAGGAACAGCTCTGAGCCAGCCAAGAAGAAGTGTGAAGTCAACTTGCAGCTGTGGTTATCCAACAAGAGAAGCCTGTCTCCCTGGGGCTACAGCATCAATCACGACCCCAGCCGCATCCCGGAGG ACTTGCCTGAGGCGCGGTGCCTATGTTTGGGTTGCGTGAACCCCTTCACCATGCAGGAGGACCGTAGCATGGTGAGCGTGCCAGTGTTCAGCCAGGTGCCAGTGCGCCGCCGCCTCTGTCCGCAACCT CCTCGGCCCGGGCCCTGCCGCCAGCGTGTTGTCATGGAGACCATCGCTGTGGGTTGCACCTGCATCTTCTGAGCCACCAACCCTCAACCAGGTGGCTACTGCAACGATCCTCCCTCCCTGCACCCACT GTGACCCTCAAGGCTGATAAACAGTAAACGTTGTTCTTTGTAAAGGAA
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RefSeq Acc Id:
XM_039096542 ⟹ XP_038952470
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 18 57,412,083 - 57,415,903 (+) NCBI mRatBN7.2 18 55,141,743 - 55,145,565 (+) NCBI
RefSeq Acc Id:
XM_039096543 ⟹ XP_038952471
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 18 57,411,667 - 57,415,903 (+) NCBI mRatBN7.2 18 55,141,329 - 55,145,565 (+) NCBI
RefSeq Acc Id:
NP_446241 ⟸ NM_053789
- Peptide Label:
precursor
- UniProtKB:
G3V8K9 (UniProtKB/TrEMBL), A6IXI4 (UniProtKB/TrEMBL)
- Sequence:
MDWPHSLLFLLAISIFLVPSQPRNTKGKRKGQGRPGPLAPGPHQVPLDLVSRVKPYARMEEYERNLGEMVAQLRNSSEPAKKKCEVNLQLWLSNKRSLSPWGYSINHDPSRIPEDLPEARCLCLGCVN PFTMQEDRSMVSVPVFSQVPVRRRLCPQPPRPGPCRQRVVMETIAVGCTCIF
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Ensembl Acc Id:
ENSRNOP00000026679 ⟸ ENSRNOT00000026679
RefSeq Acc Id:
XP_038952471 ⟸ XM_039096543
- Peptide Label:
isoform X1
- UniProtKB:
A6IXI5 (UniProtKB/TrEMBL), Q9EQI7 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038952470 ⟸ XM_039096542
- Peptide Label:
isoform X1
- UniProtKB:
A6IXI5 (UniProtKB/TrEMBL), Q9EQI7 (UniProtKB/TrEMBL)
RGD ID: 13700818
Promoter ID: EPDNEW_R11342
Type: single initiation site
Name: Il17b_1
Description: interleukin 17B
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 18 57,011,555 - 57,011,615 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2004-09-10
Il17b
interleukin 17B
Symbol and Name status set to approved
1299863
APPROVED
2002-08-07
Il17b
interleukin 17B
Symbol and Name status set to provisional
70820
PROVISIONAL