Safb (scaffold attachment factor B) - Rat Genome Database

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Gene: Safb (scaffold attachment factor B) Rattus norvegicus
Analyze
Symbol: Safb
Name: scaffold attachment factor B
RGD ID: 620613
Description: Enables sequence-specific DNA binding activity. Involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SAFB (scaffold attachment factor B); INTERACTS WITH (R)-noradrenaline; 17beta-estradiol; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SAF-B; SAF-B1; scaffold attachment factor B1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,504,657 - 1,525,545 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl91,504,456 - 1,525,781 (+)EnsemblGRCr8
mRatBN7.291,417,449 - 1,438,408 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,417,525 - 1,438,644 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,850,960 - 1,871,831 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,201,129 - 7,222,017 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,156,164 - 6,177,036 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,450,216 - 10,471,174 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,450,205 - 10,471,176 (-)Ensemblrn6Rnor6.0
Rnor_5.099,447,161 - 9,468,030 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera97,075,428 - 7,096,066 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (EXP)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP)
bortezomib  (ISO)
Bufotalin  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
deoxynivalenol  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (EXP)
phenylmercury acetate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
midbody  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn). Hartmann AM, etal., Mol Biol Cell 1999 Nov;10(11):3909-26.
4. Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA. Heinrich B, etal., J Biol Chem. 2009 May 22;284(21):14303-15. Epub 2009 Mar 12.
5. SAF-B protein couples transcription and pre-mRNA splicing to SAR/MAR elements. Nayler O, etal., Nucleic Acids Res 1998 Aug 1;26(15):3542-9.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Cloning and characterization of an alternatively spliced form of SR protein kinase 1 that interacts specifically with scaffold attachment factor-B. Nikolakaki E, etal., J Biol Chem. 2001 Oct 26;276(43):40175-82. Epub 2001 Aug 16.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. The tight junction protein ZO-2 localizes to the nucleus and interacts with the heterogeneous nuclear ribonucleoprotein scaffold attachment factor-B. Traweger A, etal., J Biol Chem 2003 Jan 24;278(4):2692-700.
Additional References at PubMed
PMID:11118435   PMID:15798188   PMID:16396499   PMID:19403048   PMID:22082260   PMID:22658674   PMID:22681889   PMID:24625528   PMID:29476059   PMID:31505169   PMID:32086573  


Genomics

Comparative Map Data
Safb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,504,657 - 1,525,545 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl91,504,456 - 1,525,781 (+)EnsemblGRCr8
mRatBN7.291,417,449 - 1,438,408 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,417,525 - 1,438,644 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,850,960 - 1,871,831 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,201,129 - 7,222,017 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,156,164 - 6,177,036 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,450,216 - 10,471,174 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,450,205 - 10,471,176 (-)Ensemblrn6Rnor6.0
Rnor_5.099,447,161 - 9,468,030 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera97,075,428 - 7,096,066 (-)NCBICelera
Cytogenetic Map9q11NCBI
SAFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,623,083 - 5,668,478 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,623,035 - 5,668,478 (+)Ensemblhg38GRCh38
GRCh37195,623,094 - 5,668,489 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,574,164 - 5,619,489 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34195,574,163 - 5,619,488NCBI
Celera195,560,521 - 5,605,843 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,384,164 - 5,429,603 (+)NCBIHuRef
CHM1_1195,622,638 - 5,668,071 (+)NCBICHM1_1
T2T-CHM13v2.0195,609,766 - 5,655,162 (+)NCBIT2T-CHM13v2.0
Safb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,891,982 - 56,913,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,891,825 - 56,913,294 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381756,584,982 - 56,606,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,584,825 - 56,606,294 (+)Ensemblmm10GRCm38
MGSCv371756,724,405 - 56,745,717 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361756,269,818 - 56,291,413 (+)NCBIMGSCv36mm8
Celera1760,929,194 - 60,950,493 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.4NCBI
Safb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,743,858 - 3,774,913 (-)Ensembl
ChiLan1.0NW_0049554953,743,673 - 3,775,073 (-)NCBIChiLan1.0ChiLan1.0
SAFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,019,474 - 10,064,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,245,664 - 9,291,164 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,640,267 - 4,685,643 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,575,592 - 5,620,513 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,575,592 - 5,620,513 (+)EnsemblpanPan2panpan1.1
SAFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,346,273 - 54,381,078 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,346,353 - 54,381,363 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2054,072,813 - 54,107,740 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02055,001,804 - 55,036,977 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,001,804 - 55,037,252 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,064,174 - 54,099,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,544,742 - 54,579,637 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,741,968 - 54,777,221 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Safb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,581,094 - 214,610,314 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,225,752 - 3,253,678 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,225,315 - 3,253,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,300,632 - 73,334,494 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1273,300,624 - 73,334,494 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,822,604 - 73,905,016 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAFB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,281,171 - 5,326,049 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,281,232 - 5,328,511 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660812,779,415 - 2,824,606 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Safb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,525,536 - 4,557,715 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248284,526,708 - 4,557,458 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Safb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1487,960,448 - 87,981,018 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Safb
65 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000072868
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)916094576Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat

Markers in Region
MARC_16413-16414:1018631384:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,431,196 - 1,431,698 (-)MAPPERmRatBN7.2
mRatBN7.291,408,692 - 1,409,275 (-)MAPPERmRatBN7.2
Rnor_6.0910,456,926 - 10,457,427NCBIRnor6.0
Rnor_6.0910,479,353 - 10,479,935NCBIRnor6.0
Rnor_5.099,476,280 - 9,476,862UniSTSRnor5.0
Rnor_5.099,453,853 - 9,454,354UniSTSRnor5.0
Celera97,104,315 - 7,104,897UniSTS
Celera97,082,138 - 7,082,639UniSTS
Cytogenetic Map9q11UniSTS
Safb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,430,283 - 1,431,587 (-)MAPPERmRatBN7.2
Rnor_6.0910,457,037 - 10,458,340NCBIRnor6.0
Rnor_5.099,453,964 - 9,455,267UniSTSRnor5.0
Celera97,082,249 - 7,083,552UniSTS
Cytogenetic Map9q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000072868   ⟹   ENSRNOP00000066884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,504,576 - 1,525,537 (+)Ensembl
mRatBN7.2 Ensembl91,417,525 - 1,438,408 (+)Ensembl
Rnor_6.0 Ensembl910,450,426 - 10,471,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081770   ⟹   ENSRNOP00000069796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,505,172 - 1,525,545 (+)Ensembl
mRatBN7.2 Ensembl91,417,871 - 1,438,408 (+)Ensembl
Rnor_6.0 Ensembl910,450,235 - 10,462,491 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089164   ⟹   ENSRNOP00000071054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,504,657 - 1,525,545 (+)Ensembl
mRatBN7.2 Ensembl91,417,525 - 1,438,408 (+)Ensembl
Rnor_6.0 Ensembl910,450,205 - 10,471,176 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115105   ⟹   ENSRNOP00000077699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,504,576 - 1,525,781 (+)Ensembl
mRatBN7.2 Ensembl91,422,809 - 1,438,644 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115324   ⟹   ENSRNOP00000088136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,518,321 - 1,523,626 (+)Ensembl
mRatBN7.2 Ensembl91,429,001 - 1,436,365 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151400   ⟹   ENSRNOP00000106846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,504,456 - 1,525,542 (+)Ensembl
RefSeq Acc Id: NM_022394   ⟹   NP_071789
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,504,657 - 1,525,545 (+)NCBI
mRatBN7.291,417,525 - 1,438,408 (+)NCBI
Rnor_6.0910,450,216 - 10,471,103 (-)NCBI
Rnor_5.099,447,161 - 9,468,030 (-)NCBI
Celera97,075,428 - 7,096,066 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596622   ⟹   XP_017452111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,504,730 - 1,525,545 (+)NCBI
mRatBN7.291,417,449 - 1,438,408 (+)NCBI
Rnor_6.0910,450,216 - 10,471,174 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_071789 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452111 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC29479 (Get FASTA)   NCBI Sequence Viewer  
  EDL83628 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000106846
GenBank Protein O88453 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071789   ⟸   NM_022394
- UniProtKB: O88453 (UniProtKB/Swiss-Prot),   A6KQX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452111   ⟸   XM_017596622
- Peptide Label: isoform X1
- UniProtKB: O88453 (UniProtKB/Swiss-Prot),   A0A0G2JZI0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071054   ⟸   ENSRNOT00000089164
Ensembl Acc Id: ENSRNOP00000066884   ⟸   ENSRNOT00000072868
Ensembl Acc Id: ENSRNOP00000069796   ⟸   ENSRNOT00000081770
Ensembl Acc Id: ENSRNOP00000077699   ⟸   ENSRNOT00000115105
Ensembl Acc Id: ENSRNOP00000088136   ⟸   ENSRNOT00000115324
Ensembl Acc Id: ENSRNOP00000106846   ⟸   ENSRNOT00000151400
Protein Domains
RRM   SAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88453-F1-model_v2 AlphaFold O88453 1-931 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696461
Promoter ID:EPDNEW_R6982
Type:initiation region
Name:Safb_1
Description:scaffold attachment factor B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0910,471,184 - 10,471,244EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620613 AgrOrtholog
BioCyc Gene G2FUF-28524 BioCyc
Ensembl Genes ENSRNOG00000050543 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000151400 ENTREZGENE
Gene3D-CATH 1.10.720.30 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  SAF_Modulators UniProtKB/Swiss-Prot
  SAFB1 UniProtKB/Swiss-Prot
  SAP_dom UniProtKB/Swiss-Prot
  SAP_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 64196 ENTREZGENE
PANTHER PTHR15683:SF6 UniProtKB/Swiss-Prot
  SCAFFOLD ATTACHMENT FACTOR B-RELATED UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
  SAP UniProtKB/Swiss-Prot
PhenoGen Safb PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
  SAP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000050543 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
  SAP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
  SSF68906 UniProtKB/Swiss-Prot
UniProt A0A0G2JW97_RAT UniProtKB/TrEMBL
  A0A0G2JZI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XWF1_RAT UniProtKB/TrEMBL
  A0A8I6A5W2_RAT UniProtKB/TrEMBL
  A0ABK0LM37_RAT UniProtKB/TrEMBL
  A6KQX0 ENTREZGENE, UniProtKB/TrEMBL
  M0RBF0_RAT UniProtKB/TrEMBL
  O88453 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Safb  scaffold attachment factor B      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Safb  scaffold attachment factor B      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to the nucleus 634000