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Gene: Cdk16 (cyclin-dependent kinase 16) Rattus norvegicus

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Symbol:

Cdk16

Name:

cyclin-dependent kinase 16

RGD ID:

620584

Description:

Enables protein serine/threonine kinase activity. Predicted to be involved in several processes, including positive regulation of autophagy; regulation of insulin secretion involved in cellular response to glucose stimulus; and secretion by cell. Located in synaptic vesicle. Is active in synaptic vesicle membrane. Orthologous to human CDK16 (cyclin dependent kinase 16); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cell division protein kinase 16; PCTAIRE protein kinase 1; PCTAIRE-1 protein kinase, alternatively spliced; PCTAIRE-motif protein kinase 1; Pctk1; serine/threonine-protein kinase PCTAIRE-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDK16 (cyclin dependent kinase 16)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Cdk16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdk16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDK16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDK16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdk16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDK16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDK16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdk16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdk16 (cyclin dependent kinase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDK16 (cyclin dependent kinase 16)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdk16 (cyclin dependent kinase 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdk16 (cyclin-dependent kinase 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdk16 (cyclin-dependent kinase 16)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pct-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pct-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdk16	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Allele / Splice:

Cdk16_v2 ; Cdk16_v1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	4,046,330 - 4,057,825 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	4,026,866 - 4,057,380 (-)	Ensembl				GRCr8
mRatBN7.2	X	1,492,814 - 1,504,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,492,814 - 1,504,148 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	1,526,769 - 1,538,316 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	5,002,471 - 5,014,018 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	1,317,829 - 1,329,324 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,707,285 - 1,718,821 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,707,289 - 1,718,637 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	2,500,716 - 2,512,252 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	12,910,972 - 12,916,939 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	2,056,946 - 2,068,298 (-)	NCBI		Celera
RGSC_v3.1	X	12,915,537 - 12,927,071 (-)	NCBI
Cytogenetic Map	X	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Asthenozoospermia (ISO)

oligospermia (ISO)

Teratozoospermia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-nitrofluorene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

corosolic acid (ISO)

coumarin (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (EXP)

dimethylarsinous acid (ISO)

dorsomorphin (ISO)

Erionite (ISO)

ethanol (ISO)

FR900359 (ISO)

genistein (EXP)

GSK-J4 (ISO)

hydrogen cyanide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

LY294002 (ISO)

methapyrilene (EXP)

methidathion (ISO)

methoxychlor (EXP)

methylseleninic acid (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodimethylamine (EXP)

ozone (ISO)

paclitaxel (EXP)

pentachlorophenol (ISO)

piperonyl butoxide (EXP)

pirinixic acid (EXP,ISO)

potassium cyanide (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (EXP,ISO)

vanadium atom (ISO)

vanadium(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

exocytosis (IBA,ISO,ISS)

growth hormone secretion (ISO,ISS)

neuron projection development (IBA,ISO,ISS)

positive regulation of autophagy (ISO)

protein deubiquitination (IEA)

proteolysis (IEA)

regulation of cell cycle (IEA)

regulation of cell cycle phase transition (IBA)

regulation of insulin secretion involved in cellular response to glucose stimulus (ISO,ISS)

spermatogenesis (IEA,ISO,ISS)

Cellular Component

cyclin-dependent protein kinase holoenzyme complex (IBA)

cytoplasm (IBA,IEA,ISO)

cytoplasmic side of plasma membrane (ISO,ISS)

cytoplasmic vesicle (IEA)

cytosol (ISO)

neuron projection (IEA)

nucleus (IBA)

plasma membrane (IEA,ISO)

synapse (IEA)

synaptic vesicle (IDA,ISO)

synaptic vesicle membrane (IDA,IEP)

transport vesicle (IEA)

Molecular Function

ATP binding (IEA)

cyclin-dependent protein serine/threonine kinase activity (IBA,IEA)

cysteine-type deubiquitinase activity (IEA)

cysteine-type peptidase activity (IEA)

hydrolase activity (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

peptidase activity (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IDA,IEA,ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression of alternatively spliced PCTAIRE-1 mRNA in PC12 cells and neonatal rat brain.	Gao CY, etal., Gene 1996 Oct 17;176(1-2):243-7.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Pctaire1 phosphorylates N-ethylmaleimide-sensitive fusion protein: implications in the regulation of its hexamerization and exocytosis.	Liu Y, etal., J Biol Chem. 2006 Apr 14;281(15):9852-8. Epub 2006 Feb 6.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:10727952	PMID:20534669	PMID:21335063	PMID:21982980	PMID:22184064	PMID:22796189	PMID:22798068

Genomics

Comparative Map Data

Cdk16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	4,046,330 - 4,057,825 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	4,026,866 - 4,057,380 (-)	Ensembl				GRCr8
mRatBN7.2	X	1,492,814 - 1,504,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,492,814 - 1,504,148 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	1,526,769 - 1,538,316 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	5,002,471 - 5,014,018 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	1,317,829 - 1,329,324 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,707,285 - 1,718,821 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,707,289 - 1,718,637 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	2,500,716 - 2,512,252 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	12,910,972 - 12,916,939 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	2,056,946 - 2,068,298 (-)	NCBI		Celera
RGSC_v3.1	X	12,915,537 - 12,927,071 (-)	NCBI
Cytogenetic Map	X	q11	NCBI

CDK16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,218,303 - 47,229,997 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,217,860 - 47,230,000 (+)	Ensembl			hg38	GRCh38
GRCh37	X	47,077,702 - 47,089,396 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	46,962,576 - 46,974,340 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	46,834,368 - 46,845,646	NCBI
Celera	X	51,272,820 - 51,284,689 (+)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	44,787,880 - 44,799,166 (+)	NCBI		HuRef
CHM1_1	X	47,109,023 - 47,120,894 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	46,627,994 - 46,639,688 (+)	NCBI		T2T-CHM13v2.0

Cdk16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	20,554,210 - 20,566,119 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	20,554,193 - 20,566,119 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	20,687,917 - 20,699,880 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	20,687,954 - 20,699,880 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	20,265,619 - 20,277,003 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	19,845,452 - 19,856,836 (+)	NCBI		MGSCv36	mm8
Celera	X	18,818,515 - 18,829,822 (+)	NCBI		Celera
Cytogenetic Map	X	A1.3	NCBI
cM Map	X	16.18	NCBI

Cdk16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	860,480 - 873,338 (-)	Ensembl
ChiLan1.0	NW_004955516	860,474 - 873,338 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDK16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	48,845,255 - 48,857,411 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	48,848,631 - 48,860,778 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	39,655,119 - 39,666,878 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,512,540 - 47,524,742 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,512,647 - 47,524,742 (+)	Ensembl			panPan2	panpan1.1

CDK16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	40,810,107 - 40,822,130 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	40,810,500 - 40,842,700 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,185,265 - 15,197,292 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	40,944,129 - 40,956,156 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	40,944,527 - 40,976,724 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	40,931,813 - 40,943,840 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	40,919,670 - 40,931,696 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	41,012,774 - 41,024,801 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdk16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,147,088 - 33,159,436 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	12,987,731 - 13,000,186 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	12,987,736 - 13,000,186 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDK16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	41,835,987 - 41,848,574 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	41,836,268 - 41,848,580 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	46,765,046 - 46,776,665 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDK16
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,405,672 - 44,416,478 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	44,410,598 - 44,416,818 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666076	9,663,924 - 9,675,983 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdk16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624887	3,986,217 - 3,999,000 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624887	3,986,218 - 3,998,379 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdk16
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	3,146,588 - 3,158,145 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdk16
52 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1248
Count of miRNA genes:	289
Interacting mature miRNAs:	379
Transcripts:	ENSRNOT00000011592, ENSRNOT00000064309
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
70166	Bp65	Blood pressure QTL 65	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	14046933	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Markers in Region

RH134860

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	1,493,276 - 1,493,471 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	1,707,748 - 1,707,942	NCBI	Rnor6.0
Rnor_5.0	X	2,501,179 - 2,501,373	UniSTS	Rnor5.0
RGSC_v3.4	X	12,910,443 - 12,910,637	UniSTS	RGSC3.4
Celera	X	2,057,409 - 2,057,603	UniSTS
Cytogenetic Map	X	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U36444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011592 ⟹ ENSRNOP00000011592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	4,046,330 - 4,053,311 (-)	Ensembl
mRatBN7.2 Ensembl	X	1,492,814 - 1,499,607 (-)	Ensembl
Rnor_6.0 Ensembl	X	1,708,278 - 1,714,061 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000051956 ⟹ ENSRNOP00000042897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	4,026,866 - 4,057,380 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000064309 ⟹ ENSRNOP00000060222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	1,492,814 - 1,504,148 (-)	Ensembl
Rnor_6.0 Ensembl	X	1,707,289 - 1,718,637 (-)	Ensembl

RefSeq Acc Id:

NM_001004132 ⟹ NP_001004132

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,046,330 - 4,057,380 (-)	NCBI
mRatBN7.2	X	1,492,814 - 1,503,864 (-)	NCBI
Rnor_6.0	X	1,708,277 - 1,714,061 (-)	NCBI
Rnor_5.0	X	2,500,716 - 2,512,252 (-)	NCBI
RGSC_v3.4	X	12,910,972 - 12,916,939 (-)	RGD
Celera	X	2,057,938 - 2,063,722 (-)	NCBI

Sequence:

show sequence

GTGGTTGCTGAGGAAGGTCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACA
CTCCGAGGGGGCCGAGGCATAGACAAGACCAATGGTGTCCCTGAGCAGATAGGCCTAGATGAGA
GTGGTGGTGGTGGTGGCAGTGACCTTGGAGAAGCTCCCACCCGTGTTGCCCCTGGGGAACTTCG
CTCTATTCGGGGCCCACTCAGCTCTGCACCAGAGATTGTGCATGAAGACATGAAGATGGGATCT
GATGGGGAGAGTGACCAGGCTTCAGCCACATCCTCAGATGAGGTGCAGTCTCCAGTGAGAGTGC
GCATGCGCAACCACCCCCCACGCAAGATCTCCACTGAGGATATCAACAAACGCCTGTCACTACC
AGCTGACATACGGCTGCCTGAGGGCTACCTTGAGAAGCTGACACTCAATAGTCCCATCTTTGAT
AAGCCTCTTAGCCGGCGCCTCCGCCGTGTCAGCTTGTCTGAGATTGGCTTTGGAAAACTGGAGA
CCTACATCAAACTAGACAAGCTGGGTGAGGGTACCTATGCCACTGTCTACAAAGGCAAAAGCAA
GCTCACAGACAACCTTGTAGCACTTAAGGAGATCAGACTGGAACACGAAGAAGGGGCACCTTGC
ACTGCTATCCGGGAAGTGTCTCTGCTCAAGGACCTCAAGCATGCCAACATCGTCACACTACATG
ACATTATCCACACAGAGAAGTCCCTCACCCTTGTCTTTGAATACTTGGACAAGGACCTGAAGCA
GTACCTGGATGACTGTGGAAATGTCATCAACATGCACAATGTGAAACTGTTCCTGTTCCAGTTG
CTCCGTGGCCTGGCCTACTGCCACAGGCAGAAGGTGCTACATCGAGACCTCAAGCCCCAGAACC
TACTCATCAACGAGAGGGGAGAGCTCAAACTGGCAGACTTTGGCCTGGCTCGTGCCAAGTCAAT
TCCTACTAAAACATACTCCAACGAAGTGGTGACACTGTGGTACCGGCCCCCCGACATCTTACTT
GGGTCCACAGACTACTCTACCCAAATTGACATGTGGGGTGTTGGCTGCATCTTTTATGAGATGG
CCACAGGCCGGCCCCTCTTCCCAGGCTCCACAGTGGAAGAACAGCTGCACTTCATCTTCCGCAT
TTTGGGAACCCCAACTGAGGACACATGGCCAGGTATCCTGTCCAATGAAGAGTTTAGAACATAC
AACTACCCCAAGTACCGAGCTGAGGCCCTTCTGAGCCATGCACCCCGACTTGATAGCGATGGAG
CTGACCTCCTCACCAAGCTGCTGCAGTTTGAGGGTCGCAATCGGATCTCTGCTGAGGATGCCAT
GAAACATCCATTCTTTCTCAGCTTGGGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATA
TTTGCACTAAAGGAGGTACAGCTACAAAAGGAGGCCAACATTCGGTCCACTTCTATGCCTGACT
CAGGCAGGCCAGCTTTCCGTGTGGTGGATACCGAGTTCTAAGCCAAGTTTTAAGCCACAGACCA
AGGCCCCAGCAGGCAGCGGCTGGAGGGATGCCACACCCCTCACAGGACAGCCCCCATCTGCAAT
CCTCCCTGCTTGTTGCCTGCTTACCTGCCTGAGCCACACTCCCCTGCCAACTTGTCCCCTGCCA
CCTGTCCAAACACCGAACTACTGGCCTGGCCTGTTAACCCAACCACTGGCCTGTCTGCTGGGTG
CTAACAAAGCTCTCACCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_031077 ⟹ NP_112339

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,046,330 - 4,057,825 (-)	NCBI
mRatBN7.2	X	1,492,814 - 1,504,309 (-)	NCBI
Rnor_6.0	X	1,707,285 - 1,718,637 (-)	NCBI
Rnor_5.0	X	2,500,716 - 2,512,252 (-)	NCBI
Celera	X	2,056,946 - 2,068,298 (-)	NCBI

Sequence:

show sequence

GTTGGCCACCATGGGGATGTACCAAGTGAGACTGTAGGGAAAGAAGGTGGTGACTCGCGTGCCT
GGCTACTGGCTGCTGCTCACCTCGATGCTACAAGATTCCTAGCAAGATCAAAACTGACCATTAA
CCTACCTCTACATCCCCCTGGCGCCGTTCCAGGGCCAACGCCACATTCCCTGCTGGGCACGCAA
TGGCCGCACCCCCTCCCGCTACAGAAGGCTCTTTTGGTACACGCAGTCCGAGGTCGCCATGGAT
CGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGGGGGCCGAGGCATAGACAAGA
CCAATGGTGTCCCTGAGCAGATAGGCCTAGATGAGAGTGGTGGTGGTGGTGGCATGACCCTTGG
AGAAGCTCCCACCCGTGTTGCCCCTGGGGAACTTCGCTCTATTCGGGGCCCACTCAGCTCTGCA
CCAGGTCTACCTGGGTTTCCCAGTCTGCTCTAGGGGCCATGTACACAAATGGATACGATGAAGA
AATATATTATATTGGGGGAAAGAGAGTGTTCTTGACTCCAAAGGCCTGGCCTTTCCCTCACTCT
GCACCAGAGATTGTGCATGAAGACATGAAGATGGGATCTGATGGGGAGAGTGACCAGGCTTCAG
CCACATCCTCAGATGAGGTGCAGTCTCCAGTGAGAGTGCGCATGCGCAACCACCCCCCACGCAA
GATCTCCACTGAGGATATCAACAAATGCCTGTCACTACCAGCTGACATACGGCTGCCTGAGGGC
TACCTTGAGAAGCTGACCCTCAATAGCCCCATCGGTGATAAGCCTCTTAGCCGGCGCCTCCGGC
CAGTCAGCTTGTCTGAGATTGGCTTTGGAAAACTGGAGACCTACATCAAACTAGACAAGCTGGG
TGAGGGTACCTATGCCACTGTCTACAAAGGCAAAAGCAAGCTCACAGACAACCTTGTAGCACTT
AAGGAGATCAGACTGGAACACGAAGAAGGGGCACCCTGCACTGCTATCCGGGAAGTATCCCTGC
TTAAGGACCTCAAGCATGCCAACATCGTCACACTACATGACATTATCCACACAGAGAAGTCCCT
CACCCTTGTCTTTGAATACTTGGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGAAATGTC
ATCAACATGCACAATGTGAAACTGTTCCTGTTCCAGTTGCTCCGTGGCCTGGCCTACTGCCACA
GGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTACTCATCAACGAGAGGGGAGAGCT
CAAACTGGCAGACTTTGGCCTGGCTTACGCCAAGTCAATTCCTACTAAAACATACTCCAACGAA
GTGGTGACACTGTGGTACCGGCCCCCTGACATCTTACTTGGGTCCACAGACTACTCCGGCCAAA
TTGACATGTGGGGTGTTGGCTGCATCTTTTATGAGATGGCCACAGGCCGGCCCCTCTTCCCAGG
CTCCACAGTGGAAGAACAGCTGCACTTCATCTTCCGCATTTTGGGAACCCCAACTGAGGACACA
TGGCCAGGTATCCTGTCCAATGAAGAGTTTAGAACATACAACTACCCCAAGTACCGAGCCGAGG
CCCTTCTGAGGCATGCACCCCGACTTGAATGCGATGGAGCTGACCTCCTCACCAAGCTGCTGCA
GTTTGAGGGTCGCAATCGGATCTCTGCTGAGGATGCCATGAAACATCCATTCTTTCTCAGCTTG
GGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACTAAAGGAGGTACAGCTAC
AAAAGGAGGCCAACATTCGGTCCACTTCTATGCCTGACTCAGGCAGGCCAGCTTTCCGTGTGGT
GGATACCGAGTTCTAAGCCAAGTTTTAAGCCACAGACAGACCAAGGCCCCAGCAGGCAGCGGCT
GGAGGGATGCCACACCCCTCACAGGACAGCCCCCATCTGCAATCCTCCCTGCTTGTTGCCTGCT
TACCTGCCTGAGCCACACTCCCCTGCCAACTTGTCCCCTGCCACCTGTCCAAACACCGAACTAC
TGGCCTGGCCTGTCAACCCAACCACTGGCCTGTCTGCTGGGTGCTAACAAAGCTCTCACCACTA
CTTTGCTTGATGTGTCTGTCTCTGTCTTGGTAGATGCTGGTGGACCGAATGGCCGTGCCAGCTT
TCCACACTAAGGCTAGGCCTTCCCCTCTTCATCACACTCTCTCCCAGGACCACTACCCCATGGC
CAGCCAGGGGTTTGGAGCTAGCCCAGGCCAGGCTCTTAATCGACTTTGACTAGAAGGTAGTGAG
TGATGCCTTGGGTCTGAGCATCATTTGCCTGCTTCCCACCTGTCCCACTTGCCTCTGTTGTATG
GGCTTTTTTTTAGTTTCTTTTATTGTTTTTTTATTATTTTAAATGAGGTTCTCACTTTTTAATG
CAATATCTCTGTATACAGACTGGTTGGGCACTACTCCCTGAGTGTGGCACTCCCACAGTATTTT
GTGCAATGAAGTCCCACTCCCACCCTTTGAGAGGTAGGGACCCAGACCCTATTCAGATCCTCAC
CATCACTAGACCCTGGAATTGGCTATGGGAAAGCATGCCTCAGCCACTCACCTTCCTCCCCTAC
CTAGCGTTCCCAGCTATAGGGGGACCTGAGAACTACCAGAGAGTGGGAGATGGACATGGTGGGG
CCTACTTTTTCCCTCCTTCAGTCCCGTAGCCAGGGCCTCCTTCCTTCTCAGGGTCTTCCCCAGC
CCAGCTCTGCCTAGCCCTCCTGCCCTGTCCTACTCGGTGCTGTTGAGTAGGGGCTCTGCCTGGA
ATCGAGCAGCTTAGTGAGGAGCCATATATAATATGTGCACAAGCAGGAGGACATGTGGGAGCTT
GTGCCCAATTGTTACACCCCAATCCCTAGGAGGGTCAGGCAGGCCAAGGACAGTCTCCTGGATG
GATGGTTTGCTCCCCTTACTCCACCTTAAGCCTTGGGACCCTTAAGCAGGGTGGGAGGGCAAGG
GAGGGTGCCCTCCTAGTGGGGTTTGGGGGGATTGGGTTCCTGAATGCACCATAATCGCTGTATG
AAATATTAAAAAAAAGTCTAAAGTGAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256617 ⟹ XP_006256679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,046,330 - 4,053,110 (-)	NCBI
mRatBN7.2	X	1,492,814 - 1,499,568 (-)	NCBI
Rnor_6.0	X	1,707,285 - 1,716,896 (-)	NCBI
Rnor_5.0	X	2,500,716 - 2,512,252 (-)	NCBI

Sequence:

show sequence

GGTTACCACAGCATTCCTCATGTTGTGTAGTAAAGTGTCACAGCATTAGGAAGGTTGAGAACTA
CTGTTCTAAAGACTGCTACTGTGTGATTAGATAGATACAGACCCTTAATTGTAAGCTATTGGGG
GAACAGCATGAAGTAAAATATGCTGATGAACATCAGAACACTGTGTTCTTTCTGTCCATGGCCA
CTGAAGTGTGTTGATTTGGGGAGTGCTACAGGAGTAGTTTTTTTGGGGGGAGGTGGAGAATCTA
GTGGATAATGAAAGGAACACAGCTATGAAGGAAAGCATTTGTGAACCAAAGAGATAATGGTGGA
AGTGGGAATGGTTGGTTGAAGCAGGGAAAGGGGATGGTGTGCCAAAGTGAATTGGAGCCATGAA
CTGAAGTGTGTGTTATTAGAGGTCTGGGTCAAATGGAGGAGCTGCATGCACTAATGAGGGTCAG
ACTGATACAAAACAGTATGTTTCTCCCTGGAGAATAGGTCTAAGTAAGGGTTCAAGGTGTGATA
ATAGAAAGTTAGGATTGGGTATGTGCTAGTCAGGGTCAAGATAAAGTGAAGGTTTAGCTCGTGC
TGCGAAGGAACTGTGCAGTGGAAATACAAGAATGTATGTTAACAATGGTAATAACTCTGAAGGT
AAGGGCTAGAGAGGTGGTTCAGCTGTTAAGAGCACATACTGCTCTTCCAGAGGACTTGAGTTCA
GATCCCTGTATGCACATCAAGAGACTCATAACTGTGAAGGGGCCTAAGTGTGAACAGAACTGGT
CAGGAATTGTACAAGATTCACAATGTACCAATATGATTCAGAGCCATGTAAAGGTCCAGAGAAT
GCTAATTTGGGTCAGCTATAAAGCACTCTGAGTGCATGTTAATGAGGATCAGATTCTAGAGGGG
ACACTGTTATTGGGAAGGACAGTGCTACAGAGGCTAACAAGTGTCTAGGCTAGGAAGGGACTCA
ATGTGGAGGTGCCAGGAGTTGCTTAAAGGGGGCAAATATATGCCAATAGATTTAAGGGCAAAGT
TTTGAATGCTGGAGGGAGTTAGAAGTAAAAAGAGAAATTGTGAATGTTAGTAGGAGTTAATATG
TAGTGAGCGCCTTCTTGAGTGTCTAGCGTGTGGTTATAGAGGTCAGGACAGAATGGAATAAGTG
TAAGTATTGTATGTAGTATGACAACTGTGTGCTCAGTAGTTGGAGTTATTGCGAATGTCCTTGG
TATGAGAGCCTGAGGACTGGTGAGTATGTATGTCTTTGAGGGATGCCAAGAAGAACAAATACCA
AGTAGAATCCTATCTCCTGATTCTTGTTCCTTCACTTGTTCTGAAGTTTATAAGCTCAGAAAGC
TGAAATTATGGTATTTGCTGCTCAAAAATGTTTGATTTATCTGTTTCTAGGAGTCTGTCTCCCC
TCAAATGTTGGATAATACCCTGTCTTCTTAAAATTCTCCAAAAGATGAGTTCTGGGAAATGTCC
ATCAAGGGTTCCAGTTAGAAGTCATAAATTAATTTATGGCTCCCTCTCCATCCCTCATTTCCCC
TAGCCCTTTCCCTTGTCACTACACACCACATACAAAACAACTGGTACGAGTGTCATATGGGGAT
GAAAGGAAGTCCTTGGGAACTGGCCACTTTCTAGGCCTAGATCCAGTGTTCGTCTCCAAGGTCA
GGATTTTATGGAGTTGTCCTGAGTTCTCTGTGGGTGGATCTTACCCTTATCTATGAGATTTCTT
CTGCTAGGCTGTTTTTGCCTTCCCTTCTAGAGACAACAGATAGAAATGGGAGTGGGAGCTTCTG
GGATAAGCATTTTGTTTCAAGGTAACAAGTGACCCATTTCTTTTGGATTCATCCTCAGCCTTAT
CCTCAACCCCCAATCTAGCTATACTTGGGCCCTGGGCCATCTCAAGGCCTGCTGTGAGTACAGA
TGGCTCCTGAGCTAGGTCTTTCCCCCTCCTTGCTGGCCCAGAGCCTAGGAGGAAGCAGAAGAAT
GCAGACCTAAACCTTTTGGTGGCCCCATTCCCACTAGCAGCTCATTTAGGTCAGCTTGTTGTCG
ATTCTAGCCTCCCTAGGTGTCTTCTTTGTGGTATTGTCTAAGTGTCTGGGACTTAACCTCGATA
AAGGTAGGTCCTAGGCTCTCAGCCCCTTGATTAGCTACTTCTATATGTACTTTTTGATATCAGC
CATTATTTCAGGTTCTCAGGATATAGCAGTGGCCTAAACATACAGAAATCTACCCTGCTGAAGC
AAATCTTCTAGTTGTGGCGGTGGTAAGACAGACAGTAAAAAGGAAAGAAACCAATAAGCAGATG
GTGTTATTTCTGAGGTGTGATAAGATCTGAGGGACACATTAGAAAGGTGAAGGAGTTCAAGATG
GCTGAGTCTTTAAGTAAGGTCATGGAAAAGGTGATATTTGAACAATGGGTTGGAGAGAATGAGG
ATAAGATATTTTCCAATTTGGGAACCAACTCTTGTATAGATGCTGAGGTAGAAACTACTGGGTG
TTGTGCAGAACAACAACTAGGAATAATGAAGGAGGTGGTGAGACTACAGGGGTAATAGAGGCAA
ATGAGGTATATAAGACAAAGGGGTCACATGAGGACTAGTATGTTTATTTGGGATGAGAAGGAAG
ATGTGGTGTATTCTCTAAGAGAAAAGGAATATGATCTAGTTTTGTAAAAACCTGGGTTTGGACC
CCGTGGGTCCCAACCCTATAGAGCCAGTCTAGCAGCTCTGAGGATAACCCCCTCACCCCCCTGG
CATCTCCATTCCAATGGTTGGGCCTGGACAATCCTCCCCCCTTTTGAATAGAGAAGTGGGATGG
TCCATTAATCACCATGACAGTGGTTGCTGAGGAAGGTGAGAGGGTCCCTGTGGGCCACAGGGAG
CATTCTGCCTGGCAGTTAGGGGTAATGTGGGGCTGGTGTCAGCGGAACATGCCATTCTATGGGC
GCACTCAGGACTTTGTCACTAGTCCTTCAGTTCTGACTGAACCCCTTGTCCCAACTGTGGCTGC
GTCTGTCACTGCTGCTGCACCTGAGGATAGTTGCTGTGGAGTGCTATGCTCCCACAGTGAGACT
ATCGCCTTAGAAACCAACAACCTACTGAGTGGACCCTTACCCTCAGCTAGTCACCCAAGTCTTA
GTACCCAGGTCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGG
GGGCCGAGGCATAGACAAGACCAATGGTGTCCCTGAGCAGATAGGCCTAGATGAGAGTGGTGGT
GGTGGTGGCAGTGACCTTGGAGAAGCTCCCACCCGTGTTGCCCCTGGGGAACTTCGCTCTATTC
GGGGCCCACTCAGCTCTGCACCAGAGATTGTGCATGAAGACATGAAGATGGGATCTGATGGGGA
GAGTGACCAGGCTTCAGCCACATCCTCAGATGAGGTGCAGTCTCCAGTGAGAGTGCGCATGCGC
AACCACCCCCCACGCAAGATCTCCACTGAGGATATCAACAAACGCCTGTCACTACCAGCTGACA
TACGGCTGCCTGAGGGCTACCTTGAGAAGCTGACACTCAATAGTCCCATCTTTGATAAGCCTCT
TAGCCGGCGCCTCCGCCGTGTCAGCTTGTCTGAGATTGGCTTTGGAAAACTGGAGACCTACATC
AAACTAGACAAGCTGGGTGAGGGTACCTATGCCACTGTCTACAAAGGCAAAAGCAAGCTCACAG
ACAACCTTGTAGCACTTAAGGAGATCAGACTGGAACACGAAGAAGGGGCACCTTGCACTGCTAT
CCGGGAAGTGTCTCTGCTCAAGGACCTCAAGCATGCCAACATCGTCACACTACATGACATTATC
CACACAGAGAAGTCCCTCACCCTTGTCTTTGAATACTTGGACAAGGACCTGAAGCAGTACCTGG
ATGACTGTGGAAATGTCATCAACATGCACAATGTGAAACTGTTCCTGTTCCAGTTGCTCCGTGG
CCTGGCCTACTGCCACAGGCAGAAGGTGCTACATCGAGACCTCAAGCCCCAGAACCTACTCATC
AACGAGAGGGGAGAGCTCAAACTGGCAGACTTTGGCCTGGCTCGTGCCAAGTCAATTCCTACTA
AAACATACTCCAACGAAGTGGTGACACTGTGGTACCGGCCCCCCGACATCTTACTTGGGTCCAC
AGACTACTCTACCCAAATTGACATGTGGGGTGTTGGCTGCATCTTTTATGAGATGGCCACAGGC
CGGCCCCTCTTCCCAGGCTCCACAGTGGAAGAACAGCTGCACTTCATCTTCCGCATTTTGGGAA
CCCCAACTGAGGACACATGGCCAGGTATCCTGTCCAATGAAGAGTTTAGAACATACAACTACCC
CAAGTACCGAGCTGAGGCCCTTCTGAGCCATGCACCCCGACTTGATAGCGATGGAGCTGACCTC
CTCACCAAGCTGCTGCAGTTTGAGGGTCGCAATCGGATCTCTGCTGAGGATGCCATGAAACATC
CATTCTTTCTCAGCTTGGGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACT
AAAGGAGGTACAGCTACAAAAGGAGGCCAACATTCGGTCCACTTCTATGCCTGACTCAGGCAGG
CCAGCTTTCCGTGTGGTGGATACCGAGTTCTAAGCCAAGTTTTAAGCCACAGACCAAGGCCCCA
GCAGGCAGCGGCTGGAGGGATGCCACACCCCTCACAGGACAGCCCCCATCTGCAATCCTCCCTG
CTTGTTGCCTGCTTACCTGCCTGAGCCACACTCCCCTGCCAACTTGTCCCCTGCCACCTGTCCA
AACACCGAACTACTGGCCTGGCCTGTTAACCCAACCACTGGCCTGTCTGCTGGGTGCTAACAAA
GCTCTCACCACTACTTTGCTTGATGTGTCTGTCTCTGTCTTGGTAGATGCTGGTGGACCGAATG
GCCGTGCCAGCTTTCCACACTAAGGCTAGGCCTTCCCCTCTTCATCACACTCTCTCCCAGGACC
ACTACCCCATGGCCAACCAGGGGTTTGGAGCTAGCCCAGGCCAGGCTCTCAATCGACTTTGACT
AGAAGGTAGTGATGCCTTGGGTCTGAGGTATCATTTGCCTGCTTCCCATCTGTCCCACTTGCCT
CTGTTGTATGGGCTTTTTTTTAGTTTCTTTTATTGTTTTTTATTATTTTAAATGAGGTTCTCAC
TTTTTAATGCAATATCTCTGTATACAGACTGGTTGGGCACTACTCCCTGAGTGTGGCCCTCCCA
CAGTATTTTGTGCAATGAAGTCCCACTCCCACCCTTTGAGAGGTAGGGACCCAGACCCTATTCA
GATCCTGACCATCACTAGACCCTGGAATTGGCTATGGGAAAGCATGCCTCAGCCACTCACCTTC
CTCCCCTACCTAGCGTTCCCAGCTATAGGGGGACCCAGAACTACCAGAGAGTGGGAGATGGACA
TGGTGGGGCCTACTTTTTCCCTCCTTCAGTCCCGTAGCCAGGGCCTCCTTCCTTCTCAGGGTCT
TCCCAGCCCAGCTCTGCCTAGCCCTCCTGCCCTGTCCTACTCGGTGCTGTTGAGTAGGGGCTCT
GCCAGGAATCGAGCAGCTTAGTGAGGAGCCATATATAATATGTATATGTGCACAAGCAGGAGGA
CATGTGGGAGCTTGTGCCCAATTGTTACACCCCAATCCCTAGGAGGGTCAGGCAGGCCAAGGAC
AGTCTCCTGGATGGATGGTTTGCTCCCCTTCCTCCACCTTAAGCCTTGGGACCCTTAAGCAGGG
TGGGAGGGCAAGGGAGGGTGCCCTCCTAGTGGGGTTTGGGGGGGGATTGGGTTCCTGAATGCAC
CATAATCGCTGTATGAAATATTAAAAAAAAAGTCTAAAGTGAAAA

hide sequence

RefSeq Acc Id:

XM_063280323 ⟹ XP_063136393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,046,330 - 4,053,100 (-)	NCBI

RefSeq Acc Id:

XM_063280324 ⟹ XP_063136394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,046,330 - 4,057,383 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004132	(Get FASTA)	NCBI Sequence Viewer
	NP_112339	(Get FASTA)	NCBI Sequence Viewer
	XP_006256679	(Get FASTA)	NCBI Sequence Viewer
	XP_063136393	(Get FASTA)	NCBI Sequence Viewer
	XP_063136394	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52912	(Get FASTA)	NCBI Sequence Viewer
	AAC52913	(Get FASTA)	NCBI Sequence Viewer
	AAH78711	(Get FASTA)	NCBI Sequence Viewer
	EDL97703	(Get FASTA)	NCBI Sequence Viewer
	EDL97704	(Get FASTA)	NCBI Sequence Viewer
	EDL97705	(Get FASTA)	NCBI Sequence Viewer
	EDL97706	(Get FASTA)	NCBI Sequence Viewer
	EDL97707	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011592
	ENSRNOP00000060222.4
	ENSRNOP00055022480
	ENSRNOP00060030092
	ENSRNOP00065027545
GenBank Protein	Q63686	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004132 ⟸ NM_001004132

- UniProtKB:

Q63687 (UniProtKB/Swiss-Prot), Q63686 (UniProtKB/Swiss-Prot), Q68G39 (UniProtKB/TrEMBL), F1LM49 (UniProtKB/TrEMBL), A0A9K3Y885 (UniProtKB/TrEMBL), A0A140UHY2 (UniProtKB/TrEMBL), D4A7B3 (UniProtKB/TrEMBL), A6JZT1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDRMKKIKRQLSMTLRGGRGIDKTNGVPEQIGLDESGGGGGSDLGEAPTRVAPGELRSIRGPLS
SAPEIVHEDMKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPE
GYLEKLTLNSPIFDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVA
LKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGN
VINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSN
EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTED
TWPGILSNEEFRTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS
LGERIHKLPDTTSIFALKEVQLQKEANIRSTSMPDSGRPAFRVVDTEF

hide sequence

RefSeq Acc Id:

NP_112339 ⟸ NM_031077

- UniProtKB:

Q63687 (UniProtKB/Swiss-Prot), Q63686 (UniProtKB/Swiss-Prot), F1LM49 (UniProtKB/TrEMBL), A0A9K3Y885 (UniProtKB/TrEMBL), A0A140UHY2 (UniProtKB/TrEMBL), D4A7B3 (UniProtKB/TrEMBL), Q68G39 (UniProtKB/TrEMBL), A6JZT1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYTNGYDEEIYYIGGKRVFLTPKAWPFPHSAPEIVHEDMKMGSDGESDQASATSSDEVQSPVRV
RMRNHPPRKISTEDINKCLSLPADIRLPEGYLEKLTLNSPIGDKPLSRRLRPVSLSEIGFGKLE
TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH
DIIHTEKSLTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQN
LLINERGELKLADFGLAYAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSGQIDMWGVGCIFYEM
ATGRPLFPGSTVEEQLHFIFRILGTPTEDTWPGILSNEEFRTYNYPKYRAEALLRHAPRLECDG
ADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEVQLQKEANIRSTSMPD
SGRPAFRVVDTEF

hide sequence

RefSeq Acc Id:	XP_006256679 ⟸ XM_006256617
- Peptide Label:	isoform X3
- UniProtKB:	A0A8J8YEJ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVVAEEGERVPVGHREHSAWQLGVMWGWCQRNMPFYGRTQDFVTSPSVLTEPLVPTVAASVTA AAPEDSCCGVLCSHSETIALETNNLLSGPLPSASHPSLSTQVAMDRMKKIKRQLSMTLRGGRGI DKTNGVPEQIGLDESGGGGGSDLGEAPTRVAPGELRSIRGPLSSAPEIVHEDMKMGSDGESDQA SATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFDKPLSRRL RRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVS LLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLAYC HRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYST QIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEDTWPGILSNEEFRTYNYPKYRA EALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEVQ LQKEANIRSTSMPDSGRPAFRVVDTEF hide sequence

Ensembl Acc Id:

ENSRNOP00000011592 ⟸ ENSRNOT00000011592

Ensembl Acc Id:

ENSRNOP00000060222 ⟸ ENSRNOT00000064309

RefSeq Acc Id:	XP_063136394 ⟸ XM_063280324
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136393 ⟸ XM_063280323
- Peptide Label:	isoform X1
- UniProtKB:	A0A8J8YEJ1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000042897 ⟸ ENSRNOT00000051956

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63686-F1-model_v2	AlphaFold	Q63686	1-496	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620584	AgrOrtholog
BioCyc Gene	G2FUF-3189	BioCyc
Ensembl Genes	ENSRNOG00000008578	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055016477	UniProtKB/Swiss-Prot
	ENSRNOG00060020982	UniProtKB/Swiss-Prot
	ENSRNOG00065020344	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011592	ENTREZGENE
	ENSRNOT00000064309.5	UniProtKB/Swiss-Prot
	ENSRNOT00055027959	UniProtKB/Swiss-Prot
	ENSRNOT00060036565	UniProtKB/Swiss-Prot
	ENSRNOT00065034393	UniProtKB/Swiss-Prot
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7112874	IMAGE-MGC_LOAD
InterPro	CDK	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot
KEGG Report	rno:81741	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93131	IMAGE-MGC_LOAD
NCBI Gene	81741	ENTREZGENE
PANTHER	CELL DIVISION PROTEIN KINASE	UniProtKB/Swiss-Prot
	CYCLIN-DEPENDENT KINASE 16	UniProtKB/Swiss-Prot
Pfam	Pkinase	UniProtKB/Swiss-Prot
PhenoGen	Cdk16	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008578	RatGTEx
	ENSRNOG00055016477	RatGTEx
	ENSRNOG00060020982	RatGTEx
	ENSRNOG00065020344	RatGTEx
SMART	S_TKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot
UniProt	A0A140UHY2	ENTREZGENE
	A0A8J8YEJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QN44_RAT	UniProtKB/TrEMBL
	A0A9K3Y885	ENTREZGENE
	A6JZT1	ENTREZGENE, UniProtKB/TrEMBL
	CDK16_RAT	UniProtKB/Swiss-Prot
	D4A7B3	ENTREZGENE
	F1LM49	ENTREZGENE
	Q63686	ENTREZGENE
	Q63687	ENTREZGENE
	Q68G39	ENTREZGENE
UniProt Secondary	A0A9K3Y885	UniProtKB/Swiss-Prot
	Q63687	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Cdk16	cyclin-dependent kinase 16	Pctk1	PCTAIRE protein kinase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-24	Pctk1	PCTAIRE protein kinase 1	Pctk1	PCTAIRE-motif protein kinase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Pctk1	PCTAIRE-motif protein kinase 1		PCTAIRE-1 protein kinase, alternatively spliced	Name updated	1299863	APPROVED
2002-08-07	Pctk1	PCTAIRE-1 protein kinase, alternatively spliced			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in neonatal brain	633589
gene_transcript	alternative splicing of a 5 exon produces two predicted proteins that differ in their N-terminal sequence but share identity downstream of the alternative splice site	633589

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar