Batf3 (basic leucine zipper ATF-like transcription factor 3) - Rat Genome Database

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Gene: Batf3 (basic leucine zipper ATF-like transcription factor 3) Rattus norvegicus
Analyze
Symbol: Batf3
Name: basic leucine zipper ATF-like transcription factor 3
RGD ID: 620501
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in myeloid dendritic cell differentiation; negative regulation of transcription by RNA polymerase II; and response to virus. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B-ATF-3; basic leucine zipper transcription factor, ATF-like 3; basic leucine zipper transcriptional factor ATF-like 3; JDP-1; Jdp1; Jun dimerization protein 1; Jun dimerization protein 1 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,220,782 - 105,232,365 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13105,220,390 - 105,232,369 (+)EnsemblGRCr8
mRatBN7.213102,689,657 - 102,701,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,689,657 - 102,701,139 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13105,209,731 - 105,221,314 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,593,687 - 106,605,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,808,675 - 103,820,258 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,713,376 - 109,726,438 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,713,489 - 109,724,863 (+)Ensemblrn6Rnor6.0
Rnor_5.013114,308,705 - 114,320,081 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413107,128,770 - 107,140,194 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13102,155,014 - 102,166,267 (+)NCBICelera
RGSC_v3.113107,317,873 - 107,329,297 (+)NCBI
Cytogenetic Map13q27NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
leprosy  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clotrimazole  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
diallyl trisulfide  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercaptopurine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
purine-6-thiol  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tacrolimus hydrate  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Repression of IL-2 promoter activity by the novel basic leucine zipper p21SNFT protein. Iacobelli M, etal., J Immunol 2000 Jul 15;165(2):860-8.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10760603   PMID:12101239   PMID:15467742   PMID:19008445   PMID:20351058   PMID:23913046  


Genomics

Comparative Map Data
Batf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,220,782 - 105,232,365 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13105,220,390 - 105,232,369 (+)EnsemblGRCr8
mRatBN7.213102,689,657 - 102,701,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,689,657 - 102,701,139 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13105,209,731 - 105,221,314 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,593,687 - 106,605,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,808,675 - 103,820,258 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,713,376 - 109,726,438 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,713,489 - 109,724,863 (+)Ensemblrn6Rnor6.0
Rnor_5.013114,308,705 - 114,320,081 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413107,128,770 - 107,140,194 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13102,155,014 - 102,166,267 (+)NCBICelera
RGSC_v3.113107,317,873 - 107,329,297 (+)NCBI
Cytogenetic Map13q27NCBI
BATF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,686,417 - 212,699,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,686,417 - 212,699,840 (-)Ensemblhg38GRCh38
GRCh371212,859,759 - 212,873,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,926,383 - 210,939,950 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1186,085,819 - 186,099,376 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,536,476 - 183,550,021 (-)NCBIHuRef
CHM1_11214,132,649 - 214,146,219 (-)NCBICHM1_1
T2T-CHM13v2.01211,931,370 - 211,944,803 (-)NCBIT2T-CHM13v2.0
Batf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,830,611 - 190,841,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,830,044 - 190,841,142 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381191,098,414 - 191,108,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,097,847 - 191,108,945 (+)Ensemblmm10GRCm38
MGSCv371192,922,293 - 192,932,822 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361192,799,029 - 192,809,558 (+)NCBIMGSCv36mm8
Celera1198,025,782 - 198,036,491 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Batf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049558152,846 - 11,035 (+)Ensembl
ChiLan1.0NW_0049558152,852 - 11,035 (+)NCBIChiLan1.0ChiLan1.0
BATF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,699,816 - 36,714,928 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,664,211 - 36,679,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,256,087 - 188,271,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,116,320 - 193,131,306 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,116,694 - 193,131,228 (-)EnsemblpanPan2panpan1.1
BATF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,843,859 - 10,854,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,843,850 - 10,857,847 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha710,418,597 - 10,431,359 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0710,549,439 - 10,562,211 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,549,430 - 10,563,388 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,472,213 - 10,484,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,573,492 - 10,586,259 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,697,314 - 10,710,068 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Batf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,596,737 - 63,610,039 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557837,001 - 850,320 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936557837,023 - 850,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BATF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,699,196 - 130,712,358 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19130,699,092 - 130,711,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,780,730 - 143,806,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BATF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,832,733 - 16,848,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,834,957 - 16,848,510 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605517,331,273 - 17,345,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Batf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,102,722 - 18,112,640 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Batf3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11069,189,042 - 69,200,720 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Batf3
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:67
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000004962
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 147 91 90 59 84 59 6 343 183 10 126 77 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000004962   ⟹   ENSRNOP00000004962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl13105,220,727 - 105,232,263 (+)Ensembl
mRatBN7.2 Ensembl13102,689,657 - 102,701,139 (+)Ensembl
Rnor_6.0 Ensembl13109,713,489 - 109,724,863 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133321   ⟹   ENSRNOP00000110541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl13105,220,390 - 105,232,369 (+)Ensembl
RefSeq Acc Id: NM_021865   ⟹   NP_068637
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813105,220,782 - 105,232,365 (+)NCBI
mRatBN7.213102,689,657 - 102,701,241 (+)NCBI
Rnor_6.013109,713,489 - 109,724,865 (+)NCBI
Rnor_5.013114,308,705 - 114,320,081 (+)NCBI
RGSC_v3.413107,128,770 - 107,140,194 (+)RGD
Celera13102,155,014 - 102,166,267 (+)NCBI
Sequence:
RefSeq Acc Id: NP_068637   ⟸   NM_021865
- UniProtKB: P97876 (UniProtKB/Swiss-Prot),   A6JGY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004962   ⟸   ENSRNOT00000004962
Ensembl Acc Id: ENSRNOP00000110541   ⟸   ENSRNOT00000133321
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97876-F1-model_v2 AlphaFold P97876 1-133 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620501 AgrOrtholog
BioCyc Gene G2FUF-16864 BioCyc
Ensembl Genes ENSRNOG00000003716 Ensembl
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
InterPro AP-1 UniProtKB/Swiss-Prot
  bZIP UniProtKB/Swiss-Prot
  bZIP_sf UniProtKB/Swiss-Prot
KEGG Report rno:60462 UniProtKB/Swiss-Prot
NCBI Gene 60462 ENTREZGENE
PANTHER PTHR23351 UniProtKB/Swiss-Prot
  PTHR23351:SF13 UniProtKB/Swiss-Prot
Pfam bZIP_2 UniProtKB/Swiss-Prot
PhenoGen Batf3 PhenoGen
PRINTS LEUZIPPRFOS UniProtKB/Swiss-Prot
PROSITE BZIP UniProtKB/Swiss-Prot
  BZIP_BASIC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003716 RatGTEx
SMART BRLZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot
UniProt A0ABK0LYG1_RAT UniProtKB/TrEMBL
  A6JGY7 ENTREZGENE, UniProtKB/TrEMBL
  BATF3_RAT UniProtKB/Swiss-Prot
  G3V6G9_RAT UniProtKB/TrEMBL
  P97876 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Batf3  basic leucine zipper ATF-like transcription factor 3  Batf3  basic leucine zipper transcription factor, ATF-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Batf3  basic leucine zipper transcription factor, ATF-like 3  Jdp1  Jun dimerization protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Jdp1  Jun dimerization protein 1    Jun dimerization protein 1 gene  Name updated 1299863 APPROVED
2002-08-07 Jdp1  Jun dimerization protein 1 gene      Symbol and Name status set to provisional 70820 PROVISIONAL