Myog (myogenin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Myog (myogenin) Rattus norvegicus
Analyze
Symbol: Myog
Name: myogenin
RGD ID: 620432
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including cellular response to magnetism; regulation of generation of precursor metabolites and energy; and response to stimulus involved in regulation of muscle adaptation. Located in nucleus. Part of protein-DNA complex. Biomarker of obesity. Orthologous to human MYOG (myogenin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: REVIEWED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,297,476 - 48,300,065 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,297,235 - 48,300,065 (+)EnsemblGRCr8
mRatBN7.21345,745,455 - 45,748,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,745,436 - 45,748,039 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,353,288 - 48,355,876 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,641,358 - 49,643,946 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,906,096 - 46,908,691 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1347,676,586 - 47,679,174 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1347,908,214 - 47,910,802 (+)NCBILyon_Normotensive
Lyon_Hypertensive1347,874,305 - 47,876,893 (+)NCBILyon_Hypertensive
F344_StmMcwi1347,831,094 - 47,833,683 (+)NCBIF344_StmMcwi
Rnor_6.01351,126,459 - 51,129,048 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,182,747 - 56,185,336 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,243,712 - 47,246,301 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,073,572 - 46,076,161 (+)NCBICelera
RGSC_v3.11347,257,754 - 47,260,344 (+)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamiprid  (EXP)
alpha-naphthoflavone  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
arecoline  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
boric acid  (ISO)
bupivacaine  (EXP)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
Cannabidivarin  (ISO)
capsaicin  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chromium atom  (EXP)
dexamethasone  (ISO)
diacetylmonoxime  (ISO)
dimethylarsinous acid  (ISO)
fulvestrant  (ISO)
indole-3-methanol  (EXP)
indoxyl sulfate  (ISO)
lead diacetate  (ISO)
lumiracoxib  (ISO)
methylmercury chloride  (ISO)
ML-7  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
nickel subsulfide  (EXP)
niclosamide  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
Ptaquiloside  (ISO)
resveratrol  (EXP,ISO)
salubrinal  (ISO)
SB 203580  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
spermine  (ISO)
tebuconazole  (ISO)
testosterone  (EXP,ISO)
theaflavin  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (IEA)
cellular response to estradiol stimulus  (IEA,ISO,ISS)
cellular response to growth factor stimulus  (ISO)
cellular response to lithium ion  (ISO)
cellular response to magnetism  (IEP)
cellular response to retinoic acid  (IEP)
cellular response to tumor necrosis factor  (ISO)
DNA-templated transcription  (IEA)
muscle cell differentiation  (IEA,ISO)
muscle organ development  (IEA,ISO)
myoblast differentiation  (IEP)
myotube differentiation  (IMP,ISO)
negative regulation of cell population proliferation  (IEA,ISO,ISS)
negative regulation of glycolytic process  (IDA)
ossification  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of muscle atrophy  (IEA,ISO,ISS)
positive regulation of myoblast differentiation  (IBA,IEA,ISO,ISS)
positive regulation of myotube differentiation  (IEA,ISO,ISS)
positive regulation of oxidative phosphorylation  (IDA)
positive regulation of skeletal muscle fiber development  (IBA,IEA,ISO,ISS)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IEA,ISO,ISS)
regulation of cell cycle  (IEA,ISO,ISS)
regulation of DNA-templated transcription  (IEA)
regulation of myoblast fusion  (IEA,ISO,ISS)
regulation of skeletal muscle satellite cell proliferation  (IEA,ISO,ISS)
response to denervation involved in regulation of muscle adaptation  (IEA,ISO,ISS)
response to electrical stimulus involved in regulation of muscle adaptation  (IDA,IEP)
response to gravity  (IEP)
response to muscle activity  (IEP)
response to muscle activity involved in regulation of muscle adaptation  (IDA)
skeletal muscle atrophy  (IEP)
skeletal muscle cell differentiation  (IBA)
skeletal muscle fiber development  (ISO)
skeletal muscle tissue development  (ISO)
skeletal muscle tissue regeneration  (IEA,IEP)
striated muscle atrophy  (IEA,ISO,ISS)

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IDA,IEA,ISO)
protein-DNA complex  (IDA)

References

References - curated
# Reference Title Reference Citation
1. Retinoic acid induces myogenin synthesis and myogenic differentiation in the rat rhabdomyosarcoma cell line BA-Han-1C. Arnold HH, etal., J Cell Biol. 1992 Aug;118(4):877-87.
2. Changes in the expression of mRNAs for myogenic factors and other muscle-specific proteins in experimental autoimmune myasthenia gravis. Asher O, etal., FEBS Lett. 1992 Mar 24;299(1):15-8.
3. Fenofibrate administration to arthritic rats increases adiponectin and leptin and prevents oxidative muscle wasting. Castillero E, etal., Endocr Connect. 2012 Jun 8;1(1):1-12. doi: 10.1530/EC-12-0003. Print 2012 Jul 1.
4. Highly specific inhibition of IGF-I-stimulated differentiation by an antisense oligodeoxyribonucleotide to myogenin mRNA. No effects on other actions of IGF-T. Florini JR and Ewton DZ, J Biol Chem. 1990 Aug 15;265(23):13435-7.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Myogenin induces a shift of enzyme activity from glycolytic to oxidative metabolism in muscles of transgenic mice. Hughes SM, etal., J Cell Biol. 1999 May 3;145(3):633-42.
8. Nerve activity-independent regulation of skeletal muscle atrophy: role of MyoD and myogenin in satellite cells and myonuclei. Hyatt JP, etal., Am J Physiol Cell Physiol 2003 Nov;285(5):C1161-73. Epub 2003 Jul 2.
9. Repetitive stretch induces c-fos and myogenin mRNA within several hours in skeletal muscle removed from rats. Ikeda S, etal., Arch Phys Med Rehabil 2003 Mar;84(3):419-23.
10. Effects of microgravity on myogenic factor expressions during postnatal development of rat skeletal muscle. Inobe M, etal., J Appl Physiol 2002 May;92(5):1936-42.
11. Localization of MyoD, myogenin and cell cycle regulatory factors in hypertrophying rat skeletal muscles. Ishido M, etal., Acta Physiol Scand. 2004 Mar;180(3):281-9.
12. Expression of MyoD and myogenin in dystrophic mice, mdx and dy, during regeneration. Jin Y, etal., Acta Neuropathol. 2000 Jun;99(6):619-27.
13. Myogenin regulates denervation-dependent muscle atrophy in mouse soleus muscle. Macpherson PC, etal., J Cell Biochem. 2011 Aug;112(8):2149-59. doi: 10.1002/jcb.23136.
14. Time-based gene expression programme following diaphragm injury in a rat model. Mehiri SN, etal., Eur Respir J. 2005 Mar;25(3):422-30.
15. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
16. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
17. Satellite cell proliferation is reduced in muscles of obese Zucker rats but restored with loading. Peterson JM, etal., Am J Physiol Cell Physiol. 2008 Aug;295(2):C521-8. Epub 2008 May 28.
18. Satellite cell proliferation in low frequency-stimulated fast muscle of hypothyroid rat. Putman CT, etal., Am J Physiol Cell Physiol. 2000 Sep;279(3):C682-90.
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
22. Comprehensive gene review and curation RGD comprehensive gene curation
23. Simultaneous myogenin expression and overall DNA hypomethylation promote in vitro myoblast differentiation. Scarpa S, etal., Cell Growth Differ. 1996 Aug;7(8):1051-8.
24. Myogenin and oxidative enzyme gene expression levels are elevated in rat soleus muscles after endurance training. Siu PM, etal., J Appl Physiol (1985). 2004 Jul;97(1):277-85. Epub 2004 Mar 19.
25. CaM kinase II-dependent phosphorylation of myogenin contributes to activity-dependent suppression of nAChR gene expression in developing rat myotubes. Tang H, etal., Cell Signal. 2004 May;16(5):551-63.
26. Differentiation of myoblasts is accelerated in culture in a magnetic field. Yuge L and Kataoka K, In Vitro Cell Dev Biol Anim. 2000 Jun;36(6):383-6.
27. Antisense inhibition of myoD expression in regenerating rat soleus muscle is followed by an increase in the mRNA levels of myoD, myf-5 and myogenin and by a retarded regeneration. Zador E, etal., Biochim Biophys Acta 2002 Jun 12;1590(1-3):52-63.
Additional References at PubMed
PMID:2537150   PMID:8393145   PMID:8587605   PMID:8760303   PMID:10835421   PMID:11076940   PMID:12133506   PMID:12486129   PMID:14762206   PMID:15322112   PMID:15489316   PMID:15673614  
PMID:15706034   PMID:16140986   PMID:16554364   PMID:17531403   PMID:17904117   PMID:18849500   PMID:19319192   PMID:19783823   PMID:20384792   PMID:20399744   PMID:21177767   PMID:21858842  
PMID:22106411   PMID:22464481   PMID:22638570   PMID:22847234   PMID:23085379   PMID:24349514   PMID:24361185   PMID:24532688   PMID:25056796   PMID:25085416   PMID:26452256   PMID:26914683  
PMID:35124612  


Genomics

Comparative Map Data
Myog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,297,476 - 48,300,065 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,297,235 - 48,300,065 (+)EnsemblGRCr8
mRatBN7.21345,745,455 - 45,748,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,745,436 - 45,748,039 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,353,288 - 48,355,876 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,641,358 - 49,643,946 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,906,096 - 46,908,691 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1347,676,586 - 47,679,174 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1347,908,214 - 47,910,802 (+)NCBILyon_Normotensive
Lyon_Hypertensive1347,874,305 - 47,876,893 (+)NCBILyon_Hypertensive
F344_StmMcwi1347,831,094 - 47,833,683 (+)NCBIF344_StmMcwi
Rnor_6.01351,126,459 - 51,129,048 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,182,747 - 56,185,336 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,243,712 - 47,246,301 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,073,572 - 46,076,161 (+)NCBICelera
RGSC_v3.11347,257,754 - 47,260,344 (+)NCBI
Cytogenetic Map13q13NCBI
MYOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,083,129 - 203,086,012 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,083,129 - 203,086,013 (-)Ensemblhg38GRCh38
GRCh371203,052,257 - 203,055,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,318,880 - 201,322,000 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341199,783,916 - 199,786,823NCBI
Celera1176,181,515 - 176,184,632 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,217,862 - 174,220,769 (-)NCBIHuRef
CHM1_11204,474,600 - 204,477,509 (-)NCBICHM1_1
T2T-CHM13v2.01202,345,882 - 202,348,764 (-)NCBIT2T-CHM13v2.0
Myog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,217,742 - 134,220,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,217,727 - 134,220,286 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381134,290,004 - 134,292,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,289,989 - 134,292,548 (+)Ensemblmm10GRCm38
MGSCv371136,186,581 - 136,189,125 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361136,106,424 - 136,108,961 (+)NCBIMGSCv36mm8
Celera1136,900,556 - 136,903,100 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.18NCBI
Myog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,099,716 - 39,102,501 (-)Ensembl
ChiLan1.0NW_00495540639,099,044 - 39,102,479 (-)NCBIChiLan1.0ChiLan1.0
MYOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,291,785 - 46,299,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,258,868 - 46,263,290 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,684,933 - 178,687,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,979,700 - 182,982,607 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,979,700 - 182,982,611 (-)EnsemblpanPan2panpan1.1
MYOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17112,116 - 114,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7112,034 - 113,892 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha7167,989 - 170,338 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.07122,772 - 125,124 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7122,763 - 125,152 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17111,008 - 113,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07220,521 - 222,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07243,050 - 245,421 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Myog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,272,365 - 72,275,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,507,042 - 1,509,815 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,507,042 - 1,509,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,782,284 - 113,787,340 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19113,783,233 - 113,785,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,243,803 - 125,245,882 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9q2.1-q2.6NCBI
MYOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,264,872 - 26,269,652 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,266,717 - 26,268,867 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605527,042,619 - 27,045,566 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,749,852 - 7,753,336 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248077,742,926 - 7,753,149 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Myog
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1101,398,177 - 1,400,805 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Myog
12 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:216
Interacting mature miRNAs:255
Transcripts:ENSRNOT00000042046
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134778041850392939Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
PMC207566P7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,282 - 45,745,492 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,287 - 51,126,496NCBIRnor6.0
Rnor_5.01356,182,575 - 56,182,784UniSTSRnor5.0
RGSC_v3.41347,243,540 - 47,243,749UniSTSRGSC3.4
Celera1346,073,400 - 46,073,609UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41347,244,008 - 47,245,508UniSTSRGSC3.4
Celera1346,073,868 - 46,075,368UniSTS
Cytogenetic Map13q13UniSTS
UniSTS:205458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,649 - 45,745,922 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,654 - 51,126,926NCBIRnor6.0
Rnor_5.01356,182,942 - 56,183,214UniSTSRnor5.0
RGSC_v3.41347,243,907 - 47,244,179UniSTSRGSC3.4
Celera1346,073,767 - 46,074,039UniSTS
Cytogenetic Map13q13UniSTS
UniSTS:234220  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,523 - 45,745,850 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,528 - 51,126,854NCBIRnor6.0
Rnor_5.01356,182,816 - 56,183,142UniSTSRnor5.0
RGSC_v3.41347,243,781 - 47,244,107UniSTSRGSC3.4
Celera1346,073,641 - 46,073,967UniSTS
Cytogenetic Map13q13UniSTS
PMC133893P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,628 - 45,746,580 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,633 - 51,127,584NCBIRnor6.0
Rnor_5.01356,182,921 - 56,183,872UniSTSRnor5.0
RGSC_v3.41347,243,886 - 47,244,837UniSTSRGSC3.4
Celera1346,073,746 - 46,074,697UniSTS
Cytogenetic Map13q13UniSTS
UniSTS:463953  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,903 - 45,746,577 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,908 - 51,127,581NCBIRnor6.0
Rnor_5.01356,183,196 - 56,183,869UniSTSRnor5.0
RGSC_v3.41347,244,161 - 47,244,834UniSTSRGSC3.4
Celera1346,074,021 - 46,074,694UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,747,899 - 45,748,013 (+)MAPPERmRatBN7.2
Rnor_6.01351,128,904 - 51,129,017NCBIRnor6.0
Rnor_5.01356,185,192 - 56,185,305UniSTSRnor5.0
RGSC_v3.41347,246,157 - 47,246,270UniSTSRGSC3.4
Celera1346,076,017 - 46,076,130UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41347,244,171 - 47,245,692UniSTSRGSC3.4
Celera1346,074,031 - 46,075,552UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,745,488 - 45,745,673 (+)MAPPERmRatBN7.2
Rnor_6.01351,126,493 - 51,126,677NCBIRnor6.0
Rnor_5.01356,182,781 - 56,182,965UniSTSRnor5.0
RGSC_v3.41347,243,746 - 47,243,930UniSTSRGSC3.4
Celera1346,073,606 - 46,073,790UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01356,183,043 - 56,184,543UniSTSRnor5.0
RGSC_v3.41347,244,008 - 47,245,508UniSTSRGSC3.4
Celera1346,073,868 - 46,075,368UniSTS
Cytogenetic Map13q13UniSTS
Myog  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01356,183,206 - 56,184,727UniSTSRnor5.0
RGSC_v3.41347,244,171 - 47,245,692UniSTSRGSC3.4
Celera1346,074,031 - 46,075,552UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 11 36 92 44 57 28 44 28 6 171 99 10 76 31 47 29 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000042046   ⟹   ENSRNOP00000039817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,297,235 - 48,300,065 (+)Ensembl
mRatBN7.2 Ensembl1345,745,436 - 45,748,039 (+)Ensembl
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087240   ⟹   ENSRNOP00000073308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)Ensembl
RefSeq Acc Id: NM_017115   ⟹   NP_058811
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,297,476 - 48,300,065 (+)NCBI
mRatBN7.21345,745,455 - 45,748,044 (+)NCBI
Dahl_SR_JrHsd1347,676,586 - 47,679,174 (+)NCBI
Lyon_Normotensive1347,908,214 - 47,910,802 (+)NCBI
Lyon_Hypertensive1347,874,305 - 47,876,893 (+)NCBI
F344_StmMcwi1347,831,094 - 47,833,683 (+)NCBI
Rnor_6.01351,126,459 - 51,129,048 (+)NCBI
Rnor_5.01356,182,747 - 56,185,336 (+)NCBI
RGSC_v3.41347,243,712 - 47,246,301 (+)RGD
Celera1346,073,572 - 46,076,161 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_058811 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41662 (Get FASTA)   NCBI Sequence Viewer  
  AAC12644 (Get FASTA)   NCBI Sequence Viewer  
  EDM09735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039817
GenBank Protein P20428 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058811   ⟸   NM_017115
- UniProtKB: O70425 (UniProtKB/TrEMBL),   F7EW09 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073308   ⟸   ENSRNOT00000087240
Ensembl Acc Id: ENSRNOP00000039817   ⟸   ENSRNOT00000042046
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20428-F1-model_v2 AlphaFold P20428 1-287 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620432 AgrOrtholog
BioCyc Gene G2FUF-18246 BioCyc
Ensembl Genes ENSRNOG00000030743 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000042046 ENTREZGENE
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
InterPro Basic UniProtKB/Swiss-Prot
  bHLH_dom UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  Myogenic_factor UniProtKB/Swiss-Prot
KEGG Report rno:29148 UniProtKB/Swiss-Prot
NCBI Gene 29148 ENTREZGENE
PANTHER MYOGENIN UniProtKB/Swiss-Prot
  PTHR11534 UniProtKB/Swiss-Prot
Pfam Basic UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
PhenoGen Myog PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000030743 RatGTEx
SMART BASIC UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
UniProt F7EW09 ENTREZGENE, UniProtKB/TrEMBL
  MYOG_RAT UniProtKB/Swiss-Prot
  O70425 ENTREZGENE, UniProtKB/TrEMBL
  P20428 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Myog  myogenin      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Myog        Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_regulation expression is increased with repetitive stretching of soleus muscles 727517