Olfm1 (olfactomedin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Olfm1 (olfactomedin 1) Rattus norvegicus
Analyze
Symbol: Olfm1
Name: olfactomedin 1
RGD ID: 620320
Description: Involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Predicted to be located in several cellular components, including axonal growth cone; neuronal cell body; and synaptic membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space and glutamatergic synapse. Predicted to be extrinsic component of postsynaptic density membrane. Orthologous to human OLFM1 (olfactomedin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1B426B; D2Sut1e; neuronal olfactomedin-related ER localized protein; Noe1; noelin; olfactomedin related ER localized protein; olfactomedin-1; pancortin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8331,918,512 - 31,956,261 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl331,918,573 - 31,956,260 (+)EnsemblGRCr8
mRatBN7.2311,520,522 - 11,558,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx314,601,361 - 14,626,222 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,186,526 - 23,211,391 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,440,746 - 21,465,605 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.036,761,031 - 6,798,739 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)Ensemblrn6Rnor6.0
Rnor_5.0312,114,825 - 12,152,487 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.437,170,421 - 7,195,345 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera36,324,040 - 6,348,939 (+)NCBICelera
RGSC_v3.137,170,720 - 7,195,645 (+)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-acetamidofluorene  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clomiphene  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (ISO)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
estrone  (ISO)
ethanol  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexestrol  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mestranol  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
triptonide  (ISO)
undecane  (EXP)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Four structurally distinct neuron-specific olfactomedin-related glycoproteins produced by differential promoter utilization and alternative mRNA splicing from a single gene. Danielson PE, etal., J Neurosci Res 1994 Jul 1;38(4):468-78.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Noelin1 Affects Lateral Mobility of Synaptic AMPA Receptors. Pandya NJ, etal., Cell Rep. 2018 Jul 31;24(5):1218-1230. doi: 10.1016/j.celrep.2018.06.102.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15927402   PMID:16751333   PMID:22632720   PMID:22923615   PMID:22992957   PMID:25218043  


Genomics

Comparative Map Data
Olfm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8331,918,512 - 31,956,261 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl331,918,573 - 31,956,260 (+)EnsemblGRCr8
mRatBN7.2311,520,522 - 11,558,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx314,601,361 - 14,626,222 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,186,526 - 23,211,391 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,440,746 - 21,465,605 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.036,761,031 - 6,798,739 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)Ensemblrn6Rnor6.0
Rnor_5.0312,114,825 - 12,152,487 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.437,170,421 - 7,195,345 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera36,324,040 - 6,348,939 (+)NCBICelera
RGSC_v3.137,170,720 - 7,195,645 (+)NCBI
Cytogenetic Map3p12NCBI
OLFM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,075,505 - 135,121,184 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,075,422 - 135,121,180 (+)Ensemblhg38GRCh38
GRCh379137,967,351 - 138,013,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,106,910 - 137,152,851 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349135,193,115 - 135,195,180NCBI
Celera9108,481,187 - 108,526,613 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,430,180 - 107,476,065 (+)NCBIHuRef
CHM1_19138,116,020 - 138,161,923 (+)NCBICHM1_1
T2T-CHM13v2.09147,297,503 - 147,344,934 (+)NCBIT2T-CHM13v2.0
Olfm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,083,105 - 28,120,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,083,004 - 28,120,748 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38228,193,093 - 28,230,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,192,992 - 28,230,736 (+)Ensemblmm10GRCm38
MGSCv37228,048,613 - 28,086,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36228,015,102 - 28,052,745 (+)NCBIMGSCv36mm8
Celera227,895,841 - 27,933,529 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Olfm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049557336,189 - 30,455 (-)Ensembl
ChiLan1.0NW_0049557336,189 - 30,455 (-)NCBIChiLan1.0ChiLan1.0
OLFM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2114,208,376 - 4,255,707 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan194,210,708 - 4,258,002 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,206,133 - 106,253,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,205,710 - 135,252,598 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,205,710 - 135,252,598 (+)EnsemblpanPan2panpan1.1
OLFM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1950,972,035 - 50,996,770 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl950,979,146 - 50,996,602 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha950,254,990 - 50,292,647 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0951,848,892 - 51,886,555 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl951,827,185 - 51,886,530 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1950,609,021 - 50,646,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0950,952,656 - 50,990,375 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,030,732 - 51,068,419 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Olfm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,060,875 - 201,083,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366692,291,228 - 2,314,148 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366692,291,328 - 2,314,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OLFM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1274,224,454 - 274,261,328 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11274,236,241 - 274,261,322 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21308,316,240 - 308,353,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OLFM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1123,028,681 - 3,063,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660582,080,815 - 2,121,416 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Olfm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247602,842,340 - 2,876,958 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247602,842,177 - 2,876,966 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Olfm1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v158,436,175 - 8,473,393 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Olfm1
184 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:749
Count of miRNA genes:289
Interacting mature miRNAs:353
Transcripts:ENSRNOT00000013443, ENSRNOT00000044951, ENSRNOT00000065953
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
D78264  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,557,328 - 11,557,449 (+)MAPPERmRatBN7.2
Rnor_6.036,797,827 - 6,797,947NCBIRnor6.0
Rnor_5.0312,151,576 - 12,151,696UniSTSRnor5.0
RGSC_v3.437,194,435 - 7,194,555UniSTSRGSC3.4
Celera36,348,029 - 6,348,149UniSTS
Cytogenetic Map3p12UniSTS
AW742568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,557,346 - 11,557,592 (+)MAPPERmRatBN7.2
Rnor_6.036,797,845 - 6,798,090NCBIRnor6.0
Rnor_5.0312,151,594 - 12,151,839UniSTSRnor5.0
RGSC_v3.437,194,453 - 7,194,698UniSTSRGSC3.4
Celera36,348,047 - 6,348,292UniSTS
Cytogenetic Map3p12UniSTS
Olfm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25113,761,244 - 113,761,328 (+)MAPPERmRatBN7.2
mRatBN7.2311,540,374 - 11,540,458 (+)MAPPERmRatBN7.2
Rnor_6.05117,759,111 - 117,759,194NCBIRnor6.0
Rnor_6.036,780,879 - 6,780,962NCBIRnor6.0
Rnor_5.0312,134,628 - 12,134,711UniSTSRnor5.0
Rnor_5.05121,698,058 - 121,698,141UniSTSRnor5.0
Celera5112,322,358 - 112,322,441UniSTS
Celera36,331,101 - 6,331,184UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013443   ⟹   ENSRNOP00000013443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl331,931,336 - 31,956,260 (+)Ensembl
mRatBN7.2 Ensembl311,533,308 - 11,558,239 (+)Ensembl
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000065953   ⟹   ENSRNOP00000060981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl331,931,336 - 31,940,204 (+)Ensembl
mRatBN7.2 Ensembl311,533,061 - 11,542,177 (+)Ensembl
Rnor_6.0 Ensembl36,773,813 - 6,782,681 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104931   ⟹   ENSRNOP00000077356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl331,918,573 - 31,956,259 (+)Ensembl
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)Ensembl
RefSeq Acc Id: NM_053573   ⟹   NP_446025
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8331,931,336 - 31,956,260 (+)NCBI
mRatBN7.2311,533,308 - 11,558,239 (+)NCBI
Rnor_6.036,773,813 - 6,798,737 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
RGSC_v3.437,170,421 - 7,195,345 (+)RGD
Celera36,324,040 - 6,348,939 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233875   ⟹   XP_006233937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8331,918,550 - 31,956,261 (+)NCBI
mRatBN7.2311,520,522 - 11,558,240 (+)NCBI
Rnor_6.036,761,031 - 6,798,739 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233876   ⟹   XP_006233938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8331,931,299 - 31,940,207 (+)NCBI
mRatBN7.2311,533,288 - 11,542,182 (+)NCBI
Rnor_6.036,773,777 - 6,782,686 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233877   ⟹   XP_006233939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8331,918,512 - 31,940,207 (+)NCBI
mRatBN7.2311,520,528 - 11,542,182 (+)NCBI
Rnor_6.036,761,031 - 6,782,686 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
RefSeq Acc Id: NP_446025   ⟸   NM_053573
- Peptide Label: precursor
- UniProtKB: Q62607 (UniProtKB/Swiss-Prot),   Q62606 (UniProtKB/Swiss-Prot),   Q62608 (UniProtKB/Swiss-Prot),   Q62609 (UniProtKB/Swiss-Prot),   A6JTM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233937   ⟸   XM_006233875
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233939   ⟸   XM_006233877
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006233938   ⟸   XM_006233876
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000060981   ⟸   ENSRNOT00000065953
Ensembl Acc Id: ENSRNOP00000013443   ⟸   ENSRNOT00000013443
Ensembl Acc Id: ENSRNOP00000077356   ⟸   ENSRNOT00000104931
Protein Domains
Noelin   Olfactomedin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62609-F1-model_v2 AlphaFold Q62609 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691931
Promoter ID:EPDNEW_R2455
Type:initiation region
Name:Olfm1_1
Description:olfactomedin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.036,773,812 - 6,773,872EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620320 AgrOrtholog
BioCyc Gene G2FUF-50285 BioCyc
Ensembl Genes ENSRNOG00000009862 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013443 ENTREZGENE
  ENSRNOT00000013443.7 UniProtKB/Swiss-Prot
  ENSRNOT00000065953 ENTREZGENE
  ENSRNOT00000104931 ENTREZGENE
  ENSRNOT00000104931.1 UniProtKB/Swiss-Prot
InterPro Noelin_dom UniProtKB/Swiss-Prot
  Olfac-like_dom UniProtKB/Swiss-Prot
  Olfactomedin-like_domain UniProtKB/Swiss-Prot
  Quino_amine_DH_bsu UniProtKB/Swiss-Prot
KEGG Report rno:93667 UniProtKB/Swiss-Prot
NCBI Gene 93667 ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/Swiss-Prot
  PTHR23192:SF34 UniProtKB/Swiss-Prot
Pfam Noelin-1 UniProtKB/Swiss-Prot
  OLF UniProtKB/Swiss-Prot
PhenoGen Olfm1 PhenoGen
PROSITE ER_TARGET UniProtKB/Swiss-Prot
  OLF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009862 RatGTEx
SMART OLF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50969 UniProtKB/Swiss-Prot
UniProt A0A8L2QVC3_RAT UniProtKB/TrEMBL
  A6JTM4 ENTREZGENE, UniProtKB/TrEMBL
  A6JTM5 ENTREZGENE, UniProtKB/TrEMBL
  A6JTM6 ENTREZGENE, UniProtKB/TrEMBL
  A6JTM7 ENTREZGENE, UniProtKB/TrEMBL
  NOE1_RAT UniProtKB/Swiss-Prot
  Q62606 ENTREZGENE
  Q62607 ENTREZGENE
  Q62608 ENTREZGENE
  Q62609 ENTREZGENE
UniProt Secondary Q62606 UniProtKB/Swiss-Prot
  Q62607 UniProtKB/Swiss-Prot
  Q62608 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Olfm1  olfactomedin 1    olfactomedin related ER localized protein  Name updated 1299863 APPROVED
2002-08-07 Olfm1  olfactomedin related ER localized protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript four different transcripts produced from differential promoter utilization and alternative splicing 729021