Mybph (myosin binding protein H) - Rat Genome Database

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Gene: Mybph (myosin binding protein H) Rattus norvegicus
Analyze
Symbol: Mybph
Name: myosin binding protein H
RGD ID: 620287
Description: Predicted to be involved in sarcomere organization. Predicted to be located in myosin filament. Predicted to be active in M band. Used to study hypertension. Orthologous to human MYBPH (myosin binding protein H); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H-protein; myBP-H; myosin-binding protein H; norvegicus myosin binding protein H
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bp395
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,205,162 - 48,212,928 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,205,269 - 48,212,928 (+)EnsemblGRCr8
mRatBN7.21345,653,156 - 45,660,893 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,653,234 - 45,660,893 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,261,307 - 48,268,974 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,549,364 - 49,557,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,814,234 - 46,821,893 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,034,228 - 51,041,903 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,034,256 - 51,041,902 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,089,915 - 56,097,580 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,151,091 - 47,158,665 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1345,981,355 - 45,988,929 (+)NCBICelera
RGSC_v3.11347,165,133 - 47,172,708 (+)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
M band  (IBA)
myosin filament  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Congenic mapping and sequence analysis of the Renin locus. Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Nucleotide and deduced amino acid sequences of rat myosin binding protein H (MyBP-H). Jung J, etal., Arch Pharm Res 1998 Dec;21(6):712-7.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:25449695   PMID:28800959  


Genomics

Comparative Map Data
Mybph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,205,162 - 48,212,928 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,205,269 - 48,212,928 (+)EnsemblGRCr8
mRatBN7.21345,653,156 - 45,660,893 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,653,234 - 45,660,893 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,261,307 - 48,268,974 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,549,364 - 49,557,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,814,234 - 46,821,893 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,034,228 - 51,041,903 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,034,256 - 51,041,902 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,089,915 - 56,097,580 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,151,091 - 47,158,665 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1345,981,355 - 45,988,929 (+)NCBICelera
RGSC_v3.11347,165,133 - 47,172,708 (+)NCBI
Cytogenetic Map13q13NCBI
MYBPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,167,811 - 203,179,214 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,167,811 - 203,175,880 (-)Ensemblhg38GRCh38
GRCh371203,136,939 - 203,144,954 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,403,562 - 201,411,565 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341199,868,595 - 199,876,599NCBI
Celera1176,266,180 - 176,274,183 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,302,068 - 174,310,071 (-)NCBIHuRef
CHM1_11204,559,258 - 204,567,263 (-)NCBICHM1_1
T2T-CHM13v2.01202,430,562 - 202,441,596 (-)NCBIT2T-CHM13v2.0
Mybph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,121,159 - 134,128,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,121,186 - 134,128,970 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381134,193,418 - 134,201,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,193,448 - 134,201,232 (+)Ensemblmm10GRCm38
MGSCv371136,090,025 - 136,097,809 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361136,009,859 - 136,017,643 (+)NCBIMGSCv36mm8
Celera1136,805,964 - 136,813,747 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.15NCBI
Mybph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,184,691 - 39,191,741 (-)Ensembl
ChiLan1.0NW_00495540639,174,864 - 39,191,969 (-)NCBIChiLan1.0ChiLan1.0
MYBPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,202,277 - 46,210,312 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,165,749 - 46,179,484 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,769,183 - 178,777,737 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,065,188 - 183,072,188 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,065,021 - 183,072,188 (-)EnsemblpanPan2panpan1.1
MYBPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,181 - 44,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl736,428 - 43,803 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha791,094 - 100,208 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0745,844 - 54,962 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl746,099 - 54,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,076 - 43,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07143,675 - 152,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07166,080 - 175,211 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mybph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,187,287 - 72,195,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,421,927 - 1,429,787 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,421,965 - 1,429,771 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYBPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,872,441 - 113,882,719 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19113,872,439 - 113,884,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,331,945 - 125,341,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYBPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,172,236 - 26,180,502 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,172,495 - 26,179,656 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605526,948,542 - 26,956,927 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mybph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,666,174 - 7,678,068 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248077,665,505 - 7,673,819 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mybph
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1101,485,231 - 1,492,706 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mybph
166 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:115
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000004528, ENSRNOT00000046854
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134778041850392939Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH128449  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81348,212,090 - 48,212,785 (+)Marker Load Pipeline
mRatBN7.21345,660,055 - 45,660,750 (+)MAPPERmRatBN7.2
Rnor_6.01351,041,066 - 51,041,760NCBIRnor6.0
Rnor_5.01356,096,746 - 56,097,440UniSTSRnor5.0
RGSC_v3.41347,157,860 - 47,158,554UniSTSRGSC3.4
Celera1345,988,124 - 45,988,818UniSTS
Cytogenetic Map13q13UniSTS
RH131996  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,658,974 - 45,659,187 (+)MAPPERmRatBN7.2
Rnor_6.01351,039,985 - 51,040,197NCBIRnor6.0
Rnor_5.01356,095,665 - 56,095,877UniSTSRnor5.0
RGSC_v3.41347,156,779 - 47,156,991UniSTSRGSC3.4
Celera1345,987,043 - 45,987,255UniSTS
RH 3.4 Map13178.0UniSTS
Cytogenetic Map13q13UniSTS
BE118735  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,658,994 - 45,659,187 (+)MAPPERmRatBN7.2
Rnor_6.01351,040,005 - 51,040,197NCBIRnor6.0
Rnor_5.01356,095,685 - 56,095,877UniSTSRnor5.0
RGSC_v3.41347,156,799 - 47,156,991UniSTSRGSC3.4
Celera1345,987,063 - 45,987,255UniSTS
RH 3.4 Map13177.7UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 11 64 116 83 82 51 81 51 6 314 177 9 87 63 92 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000004528   ⟹   ENSRNOP00000004528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,205,269 - 48,212,928 (+)Ensembl
mRatBN7.2 Ensembl1345,653,234 - 45,660,893 (+)Ensembl
Rnor_6.0 Ensembl1351,034,256 - 51,041,902 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000046854   ⟹   ENSRNOP00000044331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1351,034,297 - 51,041,879 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087320   ⟹   ENSRNOP00000075189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1351,034,310 - 51,041,065 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151198   ⟹   ENSRNOP00000111832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,205,269 - 48,212,897 (+)Ensembl
RefSeq Acc Id: NM_031813   ⟹   NP_114001
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,205,269 - 48,212,928 (+)NCBI
mRatBN7.21345,653,234 - 45,660,893 (+)NCBI
Rnor_6.01351,034,297 - 51,041,871 (+)NCBI
Rnor_5.01356,089,915 - 56,097,580 (+)NCBI
RGSC_v3.41347,151,091 - 47,158,665 (+)RGD
Celera1345,981,355 - 45,988,929 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249888   ⟹   XP_006249950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,205,162 - 48,212,928 (+)NCBI
mRatBN7.21345,653,156 - 45,660,893 (+)NCBI
Rnor_6.01351,034,228 - 51,041,903 (+)NCBI
Rnor_5.01356,089,915 - 56,097,580 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249889   ⟹   XP_006249951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,205,163 - 48,212,928 (+)NCBI
mRatBN7.21345,653,156 - 45,660,893 (+)NCBI
Rnor_6.01351,034,228 - 51,041,903 (+)NCBI
Rnor_5.01356,089,915 - 56,097,580 (+)NCBI
Sequence:
RefSeq Acc Id: XR_358909
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,205,162 - 48,212,928 (+)NCBI
mRatBN7.21345,653,156 - 45,660,893 (+)NCBI
Rnor_6.01351,034,228 - 51,041,903 (+)NCBI
Rnor_5.01356,089,915 - 56,097,580 (+)NCBI
Sequence:
RefSeq Acc Id: XR_358910
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,205,162 - 48,212,928 (+)NCBI
mRatBN7.21345,653,156 - 45,660,893 (+)NCBI
Rnor_6.01351,034,228 - 51,041,903 (+)NCBI
Rnor_5.01356,089,915 - 56,097,580 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_114001 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249950 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249951 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27526 (Get FASTA)   NCBI Sequence Viewer  
  AAH61993 (Get FASTA)   NCBI Sequence Viewer  
  EDM09738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004528
  ENSRNOP00000111832
GenBank Protein O88599 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_114001   ⟸   NM_031813
- UniProtKB: G3V6F1 (UniProtKB/TrEMBL),   A6ICA9 (UniProtKB/TrEMBL),   Q6P6V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249950   ⟸   XM_006249888
- Peptide Label: isoform X1
- UniProtKB: Q6P6V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249951   ⟸   XM_006249889
- Peptide Label: isoform X2
- UniProtKB: G3V6F1 (UniProtKB/TrEMBL),   A6ICA9 (UniProtKB/TrEMBL),   Q6P6V8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004528   ⟸   ENSRNOT00000004528
Ensembl Acc Id: ENSRNOP00000075189   ⟸   ENSRNOT00000087320
Ensembl Acc Id: ENSRNOP00000044331   ⟸   ENSRNOT00000046854
Ensembl Acc Id: ENSRNOP00000111832   ⟸   ENSRNOT00000151198
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88599-F1-model_v2 AlphaFold O88599 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698826
Promoter ID:EPDNEW_R9351
Type:single initiation site
Name:Mybph_1
Description:myosin binding protein H
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01351,034,244 - 51,034,304EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620287 AgrOrtholog
BioCyc Gene G2FUF-18248 BioCyc
Ensembl Genes ENSRNOG00000003336 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004528 ENTREZGENE
  ENSRNOT00000151198 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599482 IMAGE-MGC_LOAD
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Striated_Muscle_Regulatory UniProtKB/Swiss-Prot
KEGG Report rno:83708 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72384 IMAGE-MGC_LOAD
NCBI Gene 83708 ENTREZGENE
PANTHER MYOSIN-BINDING PROTEIN H UniProtKB/Swiss-Prot
  TITIN UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
PhenoGen Mybph PhenoGen
PRINTS FNTYPEIII UniProtKB/Swiss-Prot
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003336 RatGTEx
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A0ABK0LZ59_RAT UniProtKB/TrEMBL
  A6ICA9 ENTREZGENE, UniProtKB/TrEMBL
  G3V6F1 ENTREZGENE, UniProtKB/TrEMBL
  MYBPH_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6P6V8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Mybph  myosin binding protein H    norvegicus myosin binding protein H  Name updated 1299863 APPROVED
2002-08-07 Mybph  norvegicus myosin binding protein H      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains immunoglobulin superfamily C2 and fibronectin type III motifs 729093
gene_protein 52.7 kDa 729093