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Gene: Pja2 (praja ring finger ubiquitin ligase 2) Rattus norvegicus

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Symbol:

Pja2

Name:

praja ring finger ubiquitin ligase 2

RGD ID:

620273

Description:

Predicted to enable protein kinase A catalytic subunit binding activity; protein kinase A regulatory subunit binding activity; and ubiquitin protein ligase activity. Involved in long-term memory and regulation of protein kinase A signaling. Is active in glutamatergic synapse and postsynaptic density. Orthologous to human PJA2 (praja ring finger ubiquitin ligase 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase Praja-2; E3 ubiquitin-protein ligase Praja2; MGC91486; Neurodap1; praja 2, RING-H2 motif containing; praja ring finger 2; praja ring finger 2, E3 ubiquitin protein ligase; praja-2; praja2; protein carrying the RING-H2 sequence motif; RING-type E3 ubiquitin transferase Praja-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PJA2 (praja ring finger ubiquitin ligase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pja2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pja2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PJA2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PJA2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pja2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PJA2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PJA2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pja2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pja2 (praja ring finger ubiquitin ligase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PJA2 (praja ring finger ubiquitin ligase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pja2 (praja ring finger ubiquitin ligase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pja2 (praja ring finger ubiquitin ligase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pja2 (praja ring finger ubiquitin ligase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pja2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pja2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	111,403,624 - 111,453,703 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	111,403,624 - 111,453,703 (-)	Ensembl				GRCr8
mRatBN7.2	9	103,956,678 - 104,006,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	103,956,678 - 104,006,783 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	112,357,465 - 112,407,536 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	117,482,305 - 117,532,383 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	115,823,383 - 115,873,457 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	111,998,204 - 112,048,847 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	111,998,203 - 112,027,240 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	111,539,413 - 111,590,056 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	103,002,778 - 103,054,007 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	101,357,596 - 101,407,181 (-)	NCBI		Celera
RGSC_v3.1	9	103,212,259 - 103,263,487 (-)	NCBI
Cytogenetic Map	9	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chloropicrin (ISO)

chloroprene (EXP)

chlorpyrifos (EXP)

chromium(6+) (ISO)

cocaine (EXP)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

ethanol (ISO)

fenofibrate (ISO)

fenthion (ISO)

ferroheme b (ISO)

finasteride (EXP)

folic acid (ISO)

FR900359 (ISO)

gamma-hexachlorocyclohexane (EXP)

gemcitabine (ISO)

gentamycin (EXP)

heme b (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

leflunomide (ISO)

methapyrilene (EXP)

methidathion (ISO)

methylseleninic acid (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

phenobarbital (ISO)

quercetin (EXP)

rac-lactic acid (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

thiram (ISO)

titanium dioxide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inflammatory response (IEA,ISO,ISS)

innate immune response (IEA,ISO,ISS)

long-term memory (IMP)

positive regulation of cAMP/PKA signal transduction (IEA,IMP,ISO)

positive regulation of JNK cascade (IEA,ISO,ISS)

positive regulation of p38MAPK cascade (IEA,ISO,ISS)

positive regulation of toll-like receptor 2 signaling pathway (IEA,ISO,ISS)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA,ISO)

protein ubiquitination (IBA,IEA,ISO,ISS)

regulation of macrophage activation (IEA,ISO)

Cellular Component

centriolar satellite (IEA,ISO)

centrosome (IEA,ISO)

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (IEA,ISO)

endoplasmic reticulum membrane (IEA)

glutamatergic synapse (IDA)

Golgi membrane (IEA)

plasma membrane (IEA,ISO)

postsynaptic density (IDA,IEA)

synapse (IEA)

Molecular Function

cAMP-dependent protein kinase inhibitor activity (IEA,ISO,ISS)

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IEA,ISO)

ubiquitin-protein transferase activity (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Control of PKA stability and signalling by the RING ligase praja2.	Lignitto L, etal., Nat Cell Biol. 2011 Apr;13(4):412-22. doi: 10.1038/ncb2209. Epub 2011 Mar 20.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	A novel RING-H2 motif protein downregulated by axotomy: its characteristic localization at the postsynaptic density of axosomatic synapse.	Nakayama M, etal., J Neurosci 1995 Jul;15(7 Pt 2):5238-48.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:28471450

Genomics

Comparative Map Data

Pja2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	111,403,624 - 111,453,703 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	111,403,624 - 111,453,703 (-)	Ensembl				GRCr8
mRatBN7.2	9	103,956,678 - 104,006,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	103,956,678 - 104,006,783 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	112,357,465 - 112,407,536 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	117,482,305 - 117,532,383 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	115,823,383 - 115,873,457 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	111,998,204 - 112,048,847 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	111,998,203 - 112,027,240 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	111,539,413 - 111,590,056 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	103,002,778 - 103,054,007 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	101,357,596 - 101,407,181 (-)	NCBI		Celera
RGSC_v3.1	9	103,212,259 - 103,263,487 (-)	NCBI
Cytogenetic Map	9	q37	NCBI

PJA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	109,334,722 - 109,409,974 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	109,334,704 - 109,409,991 (-)	Ensembl			hg38	GRCh38
GRCh37	5	108,670,423 - 108,745,675 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	108,698,309 - 108,773,574 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	108,698,317 - 108,773,469	NCBI
Celera	5	104,609,971 - 104,684,311 (-)	NCBI		Celera
Cytogenetic Map	5	q21.3	NCBI
HuRef	5	103,843,957 - 103,918,776 (-)	NCBI		HuRef
CHM1_1	5	108,103,469 - 108,179,081 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	109,838,178 - 109,914,589 (-)	NCBI		T2T-CHM13v2.0

Pja2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	64,588,001 - 64,638,878 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	64,588,000 - 64,638,911 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	64,281,006 - 64,331,883 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	64,281,005 - 64,331,916 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	64,630,355 - 64,681,223 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	93,072,176 - 93,123,044 (+)	NCBI		MGSCv36	mm8
Celera	17	68,597,047 - 68,647,778 (-)	NCBI		Celera
Cytogenetic Map	17	E1.1	NCBI
cM Map	17	33.24	NCBI

Pja2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	5,450,908 - 5,490,926 (+)	Ensembl
ChiLan1.0	NW_004955418	5,429,038 - 5,493,393 (+)	NCBI	ChiLan1.0	ChiLan1.0

PJA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	104,589,371 - 104,660,556 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	102,743,027 - 102,814,212 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	104,688,464 - 104,759,669 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	110,497,245 - 110,568,089 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	110,497,245 - 110,541,354 (-)	Ensembl			panPan2	panpan1.1

PJA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	2,689,238 - 2,797,142 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	2,751,201 - 2,794,381 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	4,133,715 - 4,201,873 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	2,621,748 - 2,689,506 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	2,621,815 - 2,824,358 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	2,569,566 - 2,637,463 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	2,597,214 - 2,665,347 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	2,733,135 - 2,801,502 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pja2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	157,518,082 - 157,589,344 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	4,021,711 - 4,068,459 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	4,022,175 - 4,093,404 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PJA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	114,319,991 - 114,558,272 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	114,319,972 - 114,675,761 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	118,924,428 - 118,961,796 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PJA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	12,753,505 - 12,825,279 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	12,753,513 - 12,796,482 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666036	1,392,914 - 1,467,294 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pja2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	27,254,436 - 27,301,934 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624743	27,251,937 - 27,331,213 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pja2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	174,369,716 - 174,419,425 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pja2
381 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	120
Count of miRNA genes:	102
Interacting mature miRNAs:	110
Transcripts:	ENSRNOT00000021258
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat

Markers in Region

RH133870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	103,958,612 - 103,958,807 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	112,000,139 - 112,000,333	NCBI	Rnor6.0
Rnor_5.0	9	111,541,348 - 111,541,542	UniSTS	Rnor5.0
RGSC_v3.4	9	103,004,711 - 103,004,905	UniSTS	RGSC3.4
Celera	9	101,359,531 - 101,359,725	UniSTS
Cytogenetic Map	9	q37	UniSTS

RH144228

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	103,957,569 - 103,957,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	111,999,096 - 111,999,355	NCBI	Rnor6.0
Rnor_5.0	9	111,540,305 - 111,540,564	UniSTS	Rnor5.0
RGSC_v3.4	9	103,003,668 - 103,003,927	UniSTS	RGSC3.4
Celera	9	101,358,488 - 101,358,747	UniSTS
Cytogenetic Map	9	q37	UniSTS

AI447901

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	103,956,718 - 103,956,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	111,998,245 - 111,998,336	NCBI	Rnor6.0
Rnor_5.0	9	111,539,454 - 111,539,545	UniSTS	Rnor5.0
RGSC_v3.4	9	103,002,817 - 103,002,908	UniSTS	RGSC3.4
Celera	9	101,357,637 - 101,357,728	UniSTS
Cytogenetic Map	9	q37	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC074015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB577390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D32249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021258 ⟹ ENSRNOP00000021258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	111,403,624 - 111,453,703 (-)	Ensembl
mRatBN7.2 Ensembl	9	103,956,678 - 104,006,763 (-)	Ensembl
Rnor_6.0 Ensembl	9	112,000,590 - 112,027,155 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080962 ⟹ ENSRNOP00000072362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	111,403,624 - 111,453,703 (-)	Ensembl
mRatBN7.2 Ensembl	9	103,956,695 - 104,006,783 (-)	Ensembl
Rnor_6.0 Ensembl	9	111,998,203 - 112,027,240 (-)	Ensembl

RefSeq Acc Id:

NM_001277278 ⟹ NP_001264207

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	111,403,624 - 111,453,703 (-)	NCBI
mRatBN7.2	9	103,956,678 - 104,006,763 (-)	NCBI
Rnor_6.0	9	111,998,204 - 112,048,847 (-)	NCBI
Rnor_5.0	9	111,539,413 - 111,590,056 (-)	NCBI
Celera	9	101,357,596 - 101,407,181 (-)	NCBI

Sequence:

show sequence

GCCGCCGCTGCAGCCGCTGCGCGTTCGGCGGGGGAGGAGTCGGAGGCGGAGAAGAAGGCGGTGG
TGGCGGGTGGAGGATCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACATCTCGGAATCATTTGC
AGCTTATTCACTGTGTAAGGAAAAACCAAATTACATCCATAATTCTATTGAACTGGAAGCATAG
ACGCTGCCATATATGTCACAGTATACAGAAAAAGAACCATCAGTAATGGATCAAGACTCCAGCA
AGGCTGCGTGGCCTAGAGCAGCAGGAGGATACCAGACGATTACAGGCAGGAGGTACGGAAGGAG
ACATGCGTATGTCAGTTTTAAGCCATGTATGACCAGGCATGAACGGAGCTTGGGTCGGGCTGGC
GATGACTATGAAGTTCTGGAACTGGATGACGTTGCCAAGGAAAACACCGCAGGTTCCAGTTCAT
TGGATCAAGTCCATCCTTCTTTACCCAGTGAAACTACAGTTGAAAAAAGTGAAACAGAAATTCC
TACTTGTGGTCCAGCACTGAATCAAAGCACGGAGAGCAACCCATCCGTTGCCACAGTGTGTCAT
AGTGAGGAAGTCAGGGAGACCTTAGACAGCAGTACGAATCTTCAGAATCACGCTGAGAGAGAGT
GTACGCCAGCAGTTTGTAATGCCTCAAGTGTCCAGAATGGAATTGTGTTGGTTCATACTGACTC
TTATGATCCAGACAGCAAGCATGATGAGAATGACTCTCTTCAACTTTGTGCCCAAGCTGTGGAA
GGTGGTAGACGTCAGAAGGTATTAGGCAATGCAGTCTTTGAGCTGGAAAATGGAGAGGTAGAGA
GATATGCTGATCTGTGTCCCTCAGTTCCCTCTCTCAGTGGTGAAATAAGGGAGGAGTCTGAAGA
GCTAGGTTCAGCACTCTTAGAGAAAAATTCTGCTGGCGATGCGGAGGCTGTCCATCAGGATGGG
CAGGAATTTCAGAGGTCTTCTGAAGACGGCATTGTTAGAAAGAGGCGACAAGATGATACCGATC
AGGGAAGACAGACAGAAAATTCAACTGAAGATGCAGACTGTGTTCCAGGCCATGTTGAACAAAA
TACTAGTGAGAGAGCCAATCACCATGGAAGTTCTCCTGAACAGGTAGTGAGGCCCAAAGTTAGA
AAAGTGATCAGTTCAAGCCAGGTGGACCAAGAGAGCGGTTTTAATAGGCACGAGGCTAAGCAAA
GAAGTGTTCAGAGGTGGAGAGAGGCTCTGGAAGTTGAGGAATGCAGTTCAGATGACCCTATAAT
CAAGTGTGACGATTATGATGGAGACCATGACTGCATGTTCCTAACCCCATCCTACTCAAGAGTT
ACGCCAAGGGAAGCAGAACGTCACCGTGCGACAGCAGAAAATGGAGCCACAGCTTCAGGAAGGC
AAGAGGCTCGGGAAAATGCCTTTTGGAATGCCTGTGGAGAGTATTACCAGCTCTTTGACAAAGA
CGAAGACAGAGAACAGACGTCCTTGGAGGAGGGGGAGATTCCCTGGTTACAGTACAATGAGGTC
AATGAGAGCAGCAGCGATGAAGGGAACGAGCCTGCCAATGAGTTTGCACAACCAGAAGCTTTCA
TGTTGGATGGGAACAACAACCTGGAGGACGACTCGAGCGTGAGTGAAGACCTGGATGTGGACTG
GAGCCTATTTGATGGTTTTGCGGATGGACTTGGTGTTGCTGAAGCTATTTCCTACGTGGATCCT
CAGTTCCTCACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCACTGGCAC
ACTTAGAGTCTCTTGCTGTAGACGTTGAGGTGGCTAACCCACCTGCCAGTAAGGAAAGCATCGA
CGGACTTCCAGAAACCCTTGTCCTAGAAGATCACACCGCTATTGGTCAGGAGCAGTGCTGTCCC
ATCTGCTGCAGTGAGTACATTAAGGATGACATCGCAACAGAGCTGCCCTGCCATCACTTCTTTC
ATAAGCCTTGTGTCTCCATTTGGCTACAGAAGTCCGGAACGTGCCCTGTGTGCCGCCGCCACTT
CCCACCTGCAGTGATTGACGCATCTGCAGCTGCTTCCTCTGAACCAGACCTTGATGCCTCGCCT
GCAAACGACAATGCTGAGGAAGCCCCGTAAGCCGTCACGGGGAAATGAGATCGAAATTCTATCA
CAGTAAATCTGCAAATTCCTTCTAAATCTGATGTGCAAATAATTATATATAAATATATTTAAAA
TGCTCTATATAGTATATGCCGTAGTTTAGAAAGAGAATATTAACCTTTCTAAACTGAATTTAGG
TTTGCAGAAGATACTAAACATTTTCAAGCTGAATGTTGAAGCAGTGCATCCATTTTCTTTAGTT
GAACATGGTGTCCATTGTAACGTCAGTAGTCATCTCTGTGGCATACGTTTCTGTTTTGTCTGAA
GTGCTGCCACTAAGAGATCAGAATTAAGCTCTCCTTTCCACATCAGATGTGAAAACTGTGATCA
CAACAGTAGTACAGTTTGGTTTCATTGAAAATAAACTGAATTCTAAAGCATGCTTTTTCACTGG
TCCCTTTGCTTTTGCTACTTCGAGACCTCTTGGTTTATATAACACTGAGGTTAAGATTAAAGCT
TTTCAGAATGCCAGGCAAAGACTAGAGTTTTGACCCGAACACACACACAAAATAAAAAAATAAA
AAATAAATTACATCTTAGATGTAAACTTCCTGAAACTGTCATGTAATAAACTATTCAGTGAACG
TTGGATGTGTTTAAAGGCTAGTAAAGCATGTGAATTATCTGATGTGCTTCATGCTCGGCACAGT
CTCATGAGCTTGGCCTATGAAACACTGTCTAAGCCCTCATGCAGTCTGCTTCTACTTGTTAAAC
ACTGAAGGTCCAGACCAGTCTTGGCATCTGATTAAGAAATTGGATGTAGTTAGCTAAGGTAGTT
TGGGTTCTACTTTAGGAGATCTGAAGATTTGCACATGGCCATGTCTGTTACAGCATCACCCCAG
ATTAGAAAGGCACAGCTTTTAGGTGGTCACACGAGTAGGCAAGTCTGTGCAGACGCTGGTGTGA
TAGGTAGCTTACAGGTGAGCCCTGACATCAGCACAGGGACAACGGCTCAGCAGGCCCAGCACTG
GAGCCCATCCGCGTGCACATCTACCTGCCCTGCTCATCCAGTTCGGGAATATTTCTATAGCTTC
CCAAATCAGCTTCATCTGATTTGTGTAATATATCTGAGTATTTATAGTCTTTCTTTTTTCTCCA
GTCTTAAAAATAAATGAATTTTCACTGTTGGCACATTTGAGGCTTAAATATAAGAAACCTAACA
CTTGCATTCTGATTTTTGCATATATTGTAAATGTGGCTGGTATTTACAGCGAATCCTGTGTGTC
CTTTTATGGGTAAAACAAAAGTGAACATTGCATGCAAGTAATGTGGTGAATTTGTAATTTAGGG
GTTTTCTGGGGCTTCTGTGACTGTGGATGCTTAAATTCAGGCCTTAATGTTGCTCTAGCTAGCA
TGTTTCCTTCTAATGTACATAGTCAGCCTGTATCCACTAATCTCTGCTTGTCTTCTCCTCCGTG
GTCTTCACACCGTATCCACTGATGGTCAGTTAGTGTCAGAGGTCACCCAGGTTAGCATCAGTTC
CCATGTGTGCCGTGCGGATTGTGAGCCGTGTGGTTGCTTGGTTGGTTTTCTTTTATGTACTTTG
ATTAGCTGTGGCACTTACTGAGTAAACTTACGTTGCTGCAGACTGCTGTGTAACAAGCCACGTT
TTGTGTTTAGTCAGTATTACACACGGGACCTTGTTTTATTCTTCTAGATAGCAGCTGTCCCAAA
GAAAATATTTCTTCTTTGCCTATTAAGATTTAGCTATTATCTGCCAGTTGTTAAGGGGTTTGAT
TCCAAACTCAACCAGAGTTGAACGTAAGAAAGCTGCTGTACTCTTGCTGTCCATCTGTTACGTC
CTCCGTTGTTGGCTCCTGACTACGTACCCACGGCTGCTGAAGGAGACTTGTTTTAATTTGTTTT
AAAAAGGAAAATGAAGTTTTAGGACTTTGATGGTGGGGAAGCTGACAAGTTCAGACCCCAGTCT
GTCATTTGCTCTTAGCTTGGATCCTTTTGAAAAGTTAAGAATATATGAAGGTAAATTAGAAAAA
GTAAAAATATTGATAAAATGTCATTTATCTTATGTCTATTTTATGTTGTTATTTGGCCTATTAA
TTTTAATTTTTTGAACATTTTCTTATTTCTTGTAATATGAATGCCGATATTTAAAGTTTGACTC
ACTTGGGTTTCTTTTGTGTTTCTTAGTTGTTATCTCTAAGCTAACTAACTTTTAAGATTATTTG
TGATATGGATTTATATAAGCTGTTAAATATATATGAGCTGTTAAAATGGAATGCAAGGTTTTCC
AAAGACCAGGTCTAACTGTAATGATTGGTTTATTGTTCTACAATCCCAGCCCGGCATTTTCCGT
GTAAATCATAAACAATAAACAGGATATACTCAGTGTTCATTTCTAATA

hide sequence

RefSeq Acc Id:

NM_138896 ⟹ NP_620251

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	111,403,624 - 111,453,703 (-)	NCBI
mRatBN7.2	9	103,956,678 - 104,006,763 (-)	NCBI
Rnor_6.0	9	111,998,204 - 112,048,847 (-)	NCBI
Rnor_5.0	9	111,539,413 - 111,590,056 (-)	NCBI
RGSC_v3.4	9	103,002,778 - 103,054,007 (-)	RGD
Celera	9	101,357,596 - 101,407,181 (-)	NCBI

Sequence:

show sequence

GCCGCCGCTGCAGCCGCTGCGCGTTCGGCGGGGGAGGAGTCGGAGGCGGAGAAGAAGGCGGTGG
TGGCGGGTGGAGGATCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACATCTCGGAATCATTTGC
AGCTTATTCACTGTGTAAGGAAAAACCAAATTACATCCATAATTCTATTGAACTGGAAGCATAG
ACGCTGCCATATATGTCACAGTATACAGAAAAAGAACCATCAGTAATGGATCAAGACTCCAGCA
AGGCTGCGTGGCCTAGAGCAGCAGGAGGATACCAGACGATTACAGGCAGGAGGTACGGAAGGAG
ACATGCGTATGTCAGTTTTAAGCCATGTATGACCAGGCATGAACGGAGCTTGGGTCGGGCTGGC
GATGACTATGAAGTTCTGGAACTGGATGACGTTGCCAAGGAAAACACCGCAGGTTCCAGTTCAT
TGGATCAAGTCCATCCTTCTTTACCCAGTGAAACTACAGTTGAAAAAAGTGAAACAGAAATTCC
TACTTGTGGTCCAGCACTGAATCAAAGCACGGAGAGCAACCCATCCGTTGCCACAGTGTGTCAT
AGTGAGGAAGTCAGGGAGACCTTAGACAGCAGTACGAATCTTCAGAATCACGCTGAGAGAGAGT
GTACGCCAGCAGTTTGTAATGCCTCAAGTGTCCAGAATGGAATTGTGTTGGTTCATACTGACTC
TTATGATCCAGACAGCAAGCATGATGAGAATGACTCTCTTCAACTTTGTGCCCAAGCTGTGGAA
GGTGGTAGACGTCAGAAGGTATTAGGCAATGCAGTCTTTGAGCTGGAAAATGGAGAGGTAGAGA
GATATGCTGATCTGTGTCCCTCAGTTCCCTCTCTCAGTGGTGAAATAAGGGAGGAGTCTGAAGA
GCTAGGTTCAGCACTCTTAGAGAAAAATTCTGCTGGCGATGCGGAGGCTGTCCATCAGGATGGG
CAGGAATTTCAGAGGTCTTCTGAAGACGGCATTGTTAGAAAGAGGCGACAAGATGATACCGATC
AGGGAAGACAGACAGAAAATTCAACTGAAGATGCAGACTGTGTTCCAGGCCATGTTGAACAAAA
TACTAGTGAGAGAGCCAATCACCATGGAAGTTCTCCTGAACAGGTAGTGAGGCCCAAAGTTAGA
AAAGTGATCAGTTCAAGCCAGGTGGACCAAGAGAGCGGTTTTAATAGGCACGAGGCTAAGCAAA
GAAGTGTTCAGAGGTGGAGAGAGGCTCTGGAAGTTGAGGAATGCAGTTCAGATGACCCTATAAT
CAAGTGTGACGATTATGATGGAGACCATGACTGCATGTTCCTAACCCCATCCTACTCAAGAGTT
ACGCCAAGGGAAGCAGAACGTCACCGTGCGACAGCAGAAAATGGAGCCACAGCTTCAGGAAGGC
AAGAGGCTCGGGAAAATGCCTTTTGGAATGCCTGTGGAGAGTATTACCAGCTCTTTGACAAAGA
CGAAGACAGTTCAGAGTGCAGTGATGGGGAATGGTCTGCTTCTCTGCCTCACCGATTTTCTGGC
ACAGAAAAAGACCAGTCCTCAAGCGATGAAAGCTGGGAAACTCTGCCAGGAAAAGATGAGAATG
AACCTGAGCTACAGAGTGATAGTAGTGGCCCTGAGGAAGAAAACCAAGAATTGTCTCTTCAGGA
GGGAGAACAGACGTCCTTGGAGGAGGGGGAGATTCCCTGGTTACAGTACAATGAGGTCAATGAG
AGCAGCAGCGATGAAGGGAACGAGCCTGCCAATGAGTTTGCACAACCAGAAGCTTTCATGTTGG
ATGGGAACAACAACCTGGAGGACGACTCGAGCGTGAGTGAAGACCTGGATGTGGACTGGAGCCT
ATTTGATGGTTTTGCGGATGGACTTGGTGTTGCTGAAGCTATTTCCTACGTGGATCCTCAGTTC
CTCACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCACTGGCACACTTAG
AGTCTCTTGCTGTAGACGTTGAGGTGGCTAACCCACCTGCCAGTAAGGAAAGCATCGACGGACT
TCCAGAAACCCTTGTCCTAGAAGATCACACCGCTATTGGTCAGGAGCAGTGCTGTCCCATCTGC
TGCAGTGAGTACATTAAGGATGACATCGCAACAGAGCTGCCCTGCCATCACTTCTTTCATAAGC
CTTGTGTCTCCATTTGGCTACAGAAGTCCGGAACGTGCCCTGTGTGCCGCCGCCACTTCCCACC
TGCAGTGATTGACGCATCTGCAGCTGCTTCCTCTGAACCAGACCTTGATGCCTCGCCTGCAAAC
GACAATGCTGAGGAAGCCCCGTAAGCCGTCACGGGGAAATGAGATCGAAATTCTATCACAGTAA
ATCTGCAAATTCCTTCTAAATCTGATGTGCAAATAATTATATATAAATATATTTAAAATGCTCT
ATATAGTATATGCCGTAGTTTAGAAAGAGAATATTAACCTTTCTAAACTGAATTTAGGTTTGCA
GAAGATACTAAACATTTTCAAGCTGAATGTTGAAGCAGTGCATCCATTTTCTTTAGTTGAACAT
GGTGTCCATTGTAACGTCAGTAGTCATCTCTGTGGCATACGTTTCTGTTTTGTCTGAAGTGCTG
CCACTAAGAGATCAGAATTAAGCTCTCCTTTCCACATCAGATGTGAAAACTGTGATCACAACAG
TAGTACAGTTTGGTTTCATTGAAAATAAACTGAATTCTAAAGCATGCTTTTTCACTGGTCCCTT
TGCTTTTGCTACTTCGAGACCTCTTGGTTTATATAACACTGAGGTTAAGATTAAAGCTTTTCAG
AATGCCAGGCAAAGACTAGAGTTTTGACCCGAACACACACACAAAATAAAAAAATAAAAAATAA
ATTACATCTTAGATGTAAACTTCCTGAAACTGTCATGTAATAAACTATTCAGTGAACGTTGGAT
GTGTTTAAAGGCTAGTAAAGCATGTGAATTATCTGATGTGCTTCATGCTCGGCACAGTCTCATG
AGCTTGGCCTATGAAACACTGTCTAAGCCCTCATGCAGTCTGCTTCTACTTGTTAAACACTGAA
GGTCCAGACCAGTCTTGGCATCTGATTAAGAAATTGGATGTAGTTAGCTAAGGTAGTTTGGGTT
CTACTTTAGGAGATCTGAAGATTTGCACATGGCCATGTCTGTTACAGCATCACCCCAGATTAGA
AAGGCACAGCTTTTAGGTGGTCACACGAGTAGGCAAGTCTGTGCAGACGCTGGTGTGATAGGTA
GCTTACAGGTGAGCCCTGACATCAGCACAGGGACAACGGCTCAGCAGGCCCAGCACTGGAGCCC
ATCCGCGTGCACATCTACCTGCCCTGCTCATCCAGTTCGGGAATATTTCTATAGCTTCCCAAAT
CAGCTTCATCTGATTTGTGTAATATATCTGAGTATTTATAGTCTTTCTTTTTTCTCCAGTCTTA
AAAATAAATGAATTTTCACTGTTGGCACATTTGAGGCTTAAATATAAGAAACCTAACACTTGCA
TTCTGATTTTTGCATATATTGTAAATGTGGCTGGTATTTACAGCGAATCCTGTGTGTCCTTTTA
TGGGTAAAACAAAAGTGAACATTGCATGCAAGTAATGTGGTGAATTTGTAATTTAGGGGTTTTC
TGGGGCTTCTGTGACTGTGGATGCTTAAATTCAGGCCTTAATGTTGCTCTAGCTAGCATGTTTC
CTTCTAATGTACATAGTCAGCCTGTATCCACTAATCTCTGCTTGTCTTCTCCTCCGTGGTCTTC
ACACCGTATCCACTGATGGTCAGTTAGTGTCAGAGGTCACCCAGGTTAGCATCAGTTCCCATGT
GTGCCGTGCGGATTGTGAGCCGTGTGGTTGCTTGGTTGGTTTTCTTTTATGTACTTTGATTAGC
TGTGGCACTTACTGAGTAAACTTACGTTGCTGCAGACTGCTGTGTAACAAGCCACGTTTTGTGT
TTAGTCAGTATTACACACGGGACCTTGTTTTATTCTTCTAGATAGCAGCTGTCCCAAAGAAAAT
ATTTCTTCTTTGCCTATTAAGATTTAGCTATTATCTGCCAGTTGTTAAGGGGTTTGATTCCAAA
CTCAACCAGAGTTGAACGTAAGAAAGCTGCTGTACTCTTGCTGTCCATCTGTTACGTCCTCCGT
TGTTGGCTCCTGACTACGTACCCACGGCTGCTGAAGGAGACTTGTTTTAATTTGTTTTAAAAAG
GAAAATGAAGTTTTAGGACTTTGATGGTGGGGAAGCTGACAAGTTCAGACCCCAGTCTGTCATT
TGCTCTTAGCTTGGATCCTTTTGAAAAGTTAAGAATATATGAAGGTAAATTAGAAAAAGTAAAA
ATATTGATAAAATGTCATTTATCTTATGTCTATTTTATGTTGTTATTTGGCCTATTAATTTTAA
TTTTTTGAACATTTTCTTATTTCTTGTAATATGAATGCCGATATTTAAAGTTTGACTCACTTGG
GTTTCTTTTGTGTTTCTTAGTTGTTATCTCTAAGCTAACTAACTTTTAAGATTATTTGTGATAT
GGATTTATATAAGCTGTTAAATATATATGAGCTGTTAAAATGGAATGCAAGGTTTTCCAAAGAC
CAGGTCTAACTGTAATGATTGGTTTATTGTTCTACAATCCCAGCCCGGCATTTTCCGTGTAAAT
CATAAACAATAAACAGGATATACTCAGTGTTCATTTCTAATA

hide sequence

RefSeq Acc Id:

XM_017596266 ⟹ XP_017451755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	111,403,624 - 111,451,165 (-)	NCBI
mRatBN7.2	9	103,956,678 - 104,005,160 (-)	NCBI
Rnor_6.0	9	111,998,204 - 112,047,244 (-)	NCBI

Sequence:

show sequence

CTGTGATGTAAAAAGAGCAACTCCCACTTTCCCTTCGAATATATTGCCTCCATCCCAAGACTCA
GACAGTGTTTTAATAAGGGGAAAAACTGATCCTTCTGGAGCACAGACCATAGAAGTAGAGGTTC
AGAGGTTGCATATTGTCAGGCTTTGTGGCAAGCACCTGACCTGTGCACCGCCTCACTGCCTCCT
GTTGCTTCAAAAAGGAATCATTTGCAGCTTATTCACTGTGTAAGGAAAAACCAAATTACATCCA
TAATTCTATTGAACTGGAAGCATAGACGCTGCCATATATGTCACAGTATACAGAAAAAGAACCA
TCAGTAATGGATCAAGACTCCAGCAAGGCTGCGTGGCCTAGAGCAGCAGGAGGATACCAGACGA
TTACAGGCAGGAGGTACGGAAGGAGACATGCGTATGTCAGTTTTAAGCCATGTATGACCAGGCA
TGAACGGAGCTTGGGTCGGGCTGGCGATGACTATGAAGTTCTGGAACTGGATGACGTTGCCAAG
GAAAACACCGCAGGTTCCAGTTCATTGGATCAAGTCCATCCTTCTTTACCCAGTGAAACTACAG
TTGAAAAAAGTGAAACAGAAATTCCTACTTGTGGTCCAGCACTGAATCAAAGCACGGAGAGCAA
CCCATCCGTTGCCACAGTGTGTCATAGTGAGGAAGTCAGGGAGACCTTAGACAGCAGTACGAAT
CTTCAGAATCACGCTGAGAGAGAGTGTACGCCAGCAGTTTGTAATGCCTCAAGTGTCCAGAATG
GAATTGTGTTGGTTCATACTGACTCTTATGATCCAGACAGCAAGCATGATGAGAATGACTCTCT
TCAACTTTGTGCCCAAGCTGTGGAAGGTGGTAGACGTCAGAAGGTATTAGGCAATGCAGTCTTT
GAGCTGGAAAATGGAGAGGTAGAGAGATATGCTGATCTGTGTCCCTCAGTTCCCTCTCTCAGTG
GTGAAATAAGGGAGGAGTCTGAAGAGCTAGGTTCAGCACTCTTAGAGAAAAATTCTGCTGGCGA
TGCGGAGGCTGTCCATCAGGATGGGCAGGAATTTCAGAGGTCTTCTGAAGACGGCATTGTTAGA
AAGAGGCGACAAGATGATACCGATCAGGGAAGACAGACAGAAAATTCAACTGAAGATGCAGACT
GTGTTCCAGGCCATGTTGAACAAAATACTAGTGAGAGAGCCAATCACCATGGAAGTTCTCCTGA
ACAGGTAGTGAGGCCCAAAGTTAGAAAAGTGATCAGTTCAAGCCAGGTGGACCAAGAGAGCGGT
TTTAATAGGCACGAGGCTAAGCAAAGAAGTGTTCAGAGGTGGAGAGAGGCTCTGGAAGTTGAGG
AATGCAGTTCAGATGACCCTATAATCAAGTGTGACGATTATGATGGAGACCATGACTGCATGTT
CCTAACCCCATCCTACTCAAGAGTTACGCCAAGGGAAGCAGAACGTCACCGTGCGACAGCAGAA
AATGGAGCCACAGCTTCAGGAAGGCAAGAGGCTCGGGAAAATGCCTTTTGGAATGCCTGTGGAG
AGTATTACCAGCTCTTTGACAAAGACGAAGACAGTTCAGAGTGCAGTGATGGGGAATGGTCTGC
TTCTCTGCCTCACCGATTTTCTGGCACAGAAAAAGACCAGTCCTCAAGCGATGAAAGCTGGGAA
ACTCTGCCAGGAAAAGATGAGAATGAACCTGAGCTACAGAGTGATAGTAGTGGCCCTGAGGAAG
AAAACCAAGAATTGTCTCTTCAGGAGGGAGAACAGACGTCCTTGGAGGAGGGGGAGATTCCCTG
GTTACAGTACAATGAGGTCAATGAGAGCAGCAGCGATGAAGGGAACGAGCCTGCCAATGAGTTT
GCACAACCAGAAGCTTTCATGTTGGATGGGAACAACAACCTGGAGGACGACTCGAGCGTGAGTG
AAGACCTGGATGTGGACTGGAGCCTATTTGATGGTTTTGCGGATGGACTTGGTGTTGCTGAAGC
TATTTCCTACGTGGATCCTCAGTTCCTCACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCT
ATGGAGACTGCACTGGCACACTTAGAGTCTCTTGCTGTAGACGTTGAGGTGGCTAACCCACCTG
CCAGTAAGGAAAGCATCGACGGACTTCCAGAAACCCTTGTCCTAGAAGATCACACCGCTATTGG
TCAGGAGCAGTGCTGTCCCATCTGCTGCAGTGAGTACATTAAGGATGACATCGCAACAGAGCTG
CCCTGCCATCACTTCTTTCATAAGCCTTGTGTCTCCATTTGGCTACAGAAGTCCGGAACGTGCC
CTGTGTGCCGCCGCCACTTCCCACCTGCAGTGATTGACGCATCTGCAGCTGCTTCCTCTGAACC
AGACCTTGATGCCTCGCCTGCAAACGACAATGCTGAGGAAGCCCCGTAAGCCGTCACGGGGAAA
TGAGATCGAAATTCTATCACAGTAAATCTGCAAATTCCTTCTAAATCTGATGTGCAAATAATTA
TATATAAATATATTTAAAATGCTCTATATAGTATATGCCGTAGTTTAGAAAGAGAATATTAACC
TTTCTAAACTGAATTTAGGTTTGCAGAAGATACTAAACATTTTCAAGCTGAATGTTGAAGCAGT
GCATCCATTTTCTTTAGTTGAACATGGTGTCCATTGTAACGTCAGTAGTCATCTCTGTGGCATA
CGTTTCTGTTTTGTCTGAAGTGCTGCCACTAAGAGATCAGAATTAAGCTCTCCTTTCCACATCA
GATGTGAAAACTGTGATCACAACAGTAGTACAGTTTGGTTTCATTGAAAATAAACTGAATTCTA
AAGCATGCTTTTTCACTGGTCCCTTTGCTTTTGCTACTTCGAGACCTCTTGGTTTATATAACAC
TGAGGTTAAGATTAAAGCTTTTCAGAATGCCAGGCAAAGACTAGAGTTTTGACCCGAACACACA
CACAAAATAAAAAAATAAAAAATAAATTACATCTTAGATGTAAACTTCCTGAAACTGTCATGTA
ATAAACTATTCAGTGAACGTTGGATGTGTTTAAAGGCTAGTAAAGCATGTGAATTATCTGATGT
GCTTCATGCTCGGCACAGTCTCATGAGCTTGGCCTATGAAACACTGTCTAAGCCCTCATGCAGT
CTGCTTCTACTTGTTAAACACTGAAGGTCCAGACCAGTCTTGGCATCTGATTAAGAAATTGGAT
GTAGTTAGCTAAGGTAGTTTGGGTTCTACTTTAGGAGATCTGAAGATTTGCACATGGCCATGTC
TGTTACAGCATCACCCCAGATTAGAAAGGCACAGCTTTTAGGTGGTCACACGAGTAGGCAAGTC
TGTGCAGACGCTGGTGTGATAGGTAGCTTACAGGTGAGCCCTGACATCAGCACAGGGACAACGG
CTCAGCAGGCCCAGCACTGGAGCCCATCCGCGTGCACATCTACCTGCCCTGCTCATCCAGTTCG
GGAATATTTCTATAGCTTCCCAAATCAGCTTCATCTGATTTGTGTAATATATCTGAGTATTTAT
AGTCTTTCTTTTTTCTCCAGTCTTAAAAATAAATGAATTTTCACTGTTGGCACATTTGAGGCTT
AAATATAAGAAACCTAACACTTGCATTCTGATTTTTGCATATATTGTAAATGTGGCTGGTATTT
ACAGCGAATCCTGTGTGTCCTTTTATGGGTAAAACAAAAGTGAACATTGCATGCAAGTAATGTG
GTGAATTTGTAATTTAGGGGTTTTCTGGGGCTTCTGTGACTGTGGATGCTTAAATTCAGGCCTT
AATGTTGCTCTAGCTAGCATGTTTCCTTCTAATGTACATAGTCAGCCTGTATCCACTAATCTCT
GCTTGTCTTCTCCTCCGTGGTCTTCACACCGTATCCACTGATGGTCAGTTAGTGTCAGAGGTCA
CCCAGGTTAGCATCAGTTCCCATGTGTGCCGTGCGGATTGTGAGCCGTGTGGTTGCTTGGTTGG
TTTTCTTTTATGTACTTTGATTAGCTGTGGCACTTACTGAGTAAACTTACGTTGCTGCAGACTG
CTGTGTAACAAGCCACGTTTTGTGTTTAGTCAGTATTACACACGGGACCTTGTTTTATTCTTCT
AGATAGCAGCTGTCCCAAAGAAAATATTTCTTCTTTGCCTATTAAGATTTAGCTATTATCTGCC
AGTTGTTAAGGGGTTTGATTCCAAACTCAACCAGAGTTGAACGTAAGAAAGCTGCTGTACTCTT
GCTGTCCATCTGTTACGTCCTCCGTTGTTGGCTCCTGACTACGTACCCACGGCTGCTGAAGGAG
ACTTGTTTTAATTTGTTTTAAAAAGGAAAATGAAGTTTTAGGACTTTGATGGTGGGGAAGCTGA
CAAGTTCAGACCCCAGTCTGTCATTTGCTCTTAGCTTGGATCCTTTTGAAAAGTTAAGAATATA
TGAAGGTAAATTAGAAAAAGTAAAAATATTGATAAAATGTCATTTATCTTATGTCTATTTTATG
TTGTTATTTGGCCTATTAATTTTAATTTTTTGAACATTTTCTTATTTCTTGTAATATGAATGCC
GATATTTAAAGTTTGACTCACTTGGGTTTCTTTTGTGTTTCTTAGTTGTTATCTCTAAGCTAAC
TAACTTTTAAGATTATTTGTGATATGGATTTATATAAGCTGTTAAATATATATGAGCTGTTAAA
ATGGAATGCAAGGTTTTCCAAAGACCAGGTCTAACTGTAATGATTGGTTTATTGTTCTACAATC
CCAGCCCGGCATTTTCCGTGTAAATCATAAACAATAAACAGGATATACTCAGTGTTCATTTCTA
ATA

hide sequence

RefSeq Acc Id:

XM_063266624 ⟹ XP_063122694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	111,403,624 - 111,451,165 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264207	(Get FASTA)	NCBI Sequence Viewer
	NP_620251	(Get FASTA)	NCBI Sequence Viewer
	XP_017451755	(Get FASTA)	NCBI Sequence Viewer
	XP_063122694	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH74015	(Get FASTA)	NCBI Sequence Viewer
	BAA06979	(Get FASTA)	NCBI Sequence Viewer
	EDL91826	(Get FASTA)	NCBI Sequence Viewer
	EDL91827	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021258
	ENSRNOP00000072362
	ENSRNOP00000072362.1
GenBank Protein	Q63364	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_620251 ⟸ NM_138896
- Peptide Label:	isoform 1
- UniProtKB:	Q63364 (UniProtKB/Swiss-Prot), A6JRB1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQYTEKEPSVMDQDSSKAAWPRAAGGYQTITGRRYGRRHAYVSFKPCMTRHERSLGRAGDDYE VLELDDVAKENTAGSSSLDQVHPSLPSETTVEKSETEIPTCGPALNQSTESNPSVATVCHSEEV RETLDSSTNLQNHAERECTPAVCNASSVQNGIVLVHTDSYDPDSKHDENDSLQLCAQAVEGGRR QKVLGNAVFELENGEVERYADLCPSVPSLSGEIREESEELGSALLEKNSAGDAEAVHQDGQEFQ RSSEDGIVRKRRQDDTDQGRQTENSTEDADCVPGHVEQNTSERANHHGSSPEQVVRPKVRKVIS SSQVDQESGFNRHEAKQRSVQRWREALEVEECSSDDPIIKCDDYDGDHDCMFLTPSYSRVTPRE AERHRATAENGATASGRQEARENAFWNACGEYYQLFDKDEDSSECSDGEWSASLPHRFSGTEKD QSSSDESWETLPGKDENEPELQSDSSGPEEENQELSLQEGEQTSLEEGEIPWLQYNEVNESSSD EGNEPANEFAQPEAFMLDGNNNLEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLTYM ALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEY IKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSEPDLDASPANDNAE EAP hide sequence

RefSeq Acc Id:	NP_001264207 ⟸ NM_001277278
- Peptide Label:	isoform 2
- UniProtKB:	A0A0H2UHM9 (UniProtKB/TrEMBL), A6JRB0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQYTEKEPSVMDQDSSKAAWPRAAGGYQTITGRRYGRRHAYVSFKPCMTRHERSLGRAGDDYE VLELDDVAKENTAGSSSLDQVHPSLPSETTVEKSETEIPTCGPALNQSTESNPSVATVCHSEEV RETLDSSTNLQNHAERECTPAVCNASSVQNGIVLVHTDSYDPDSKHDENDSLQLCAQAVEGGRR QKVLGNAVFELENGEVERYADLCPSVPSLSGEIREESEELGSALLEKNSAGDAEAVHQDGQEFQ RSSEDGIVRKRRQDDTDQGRQTENSTEDADCVPGHVEQNTSERANHHGSSPEQVVRPKVRKVIS SSQVDQESGFNRHEAKQRSVQRWREALEVEECSSDDPIIKCDDYDGDHDCMFLTPSYSRVTPRE AERHRATAENGATASGRQEARENAFWNACGEYYQLFDKDEDREQTSLEEGEIPWLQYNEVNESS SDEGNEPANEFAQPEAFMLDGNNNLEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLT YMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCS EYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSEPDLDASPANDN AEEAP hide sequence

RefSeq Acc Id:	XP_017451755 ⟸ XM_017596266
- Peptide Label:	isoform X1
- UniProtKB:	Q63364 (UniProtKB/Swiss-Prot), A6JRB1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQYTEKEPSVMDQDSSKAAWPRAAGGYQTITGRRYGRRHAYVSFKPCMTRHERSLGRAGDDYE VLELDDVAKENTAGSSSLDQVHPSLPSETTVEKSETEIPTCGPALNQSTESNPSVATVCHSEEV RETLDSSTNLQNHAERECTPAVCNASSVQNGIVLVHTDSYDPDSKHDENDSLQLCAQAVEGGRR QKVLGNAVFELENGEVERYADLCPSVPSLSGEIREESEELGSALLEKNSAGDAEAVHQDGQEFQ RSSEDGIVRKRRQDDTDQGRQTENSTEDADCVPGHVEQNTSERANHHGSSPEQVVRPKVRKVIS SSQVDQESGFNRHEAKQRSVQRWREALEVEECSSDDPIIKCDDYDGDHDCMFLTPSYSRVTPRE AERHRATAENGATASGRQEARENAFWNACGEYYQLFDKDEDSSECSDGEWSASLPHRFSGTEKD QSSSDESWETLPGKDENEPELQSDSSGPEEENQELSLQEGEQTSLEEGEIPWLQYNEVNESSSD EGNEPANEFAQPEAFMLDGNNNLEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLTYM ALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEY IKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSEPDLDASPANDNAE EAP hide sequence

Ensembl Acc Id:

ENSRNOP00000021258 ⟸ ENSRNOT00000021258

Ensembl Acc Id:

ENSRNOP00000072362 ⟸ ENSRNOT00000080962

RefSeq Acc Id:	XP_063122694 ⟸ XM_063266624
- Peptide Label:	isoform X2
- UniProtKB:	A0A0H2UHM9 (UniProtKB/TrEMBL), A6JRB0 (UniProtKB/TrEMBL)

Protein Domains

RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63364-F1-model_v2	AlphaFold	Q63364	1-707	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620273	AgrOrtholog
BioCyc Gene	G2FUF-26517	BioCyc
Ensembl Genes	ENSRNOG00000015528	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021258	ENTREZGENE
	ENSRNOT00000080962	ENTREZGENE
	ENSRNOT00000080962.2	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7105756	IMAGE-MGC_LOAD
InterPro	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
KEGG Report	rno:192256	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91486	IMAGE-MGC_LOAD
NCBI Gene	192256	ENTREZGENE
PANTHER	NEP1-INTERACTING PROTEIN-LIKE 2	UniProtKB/Swiss-Prot
	NEP1-INTERACTING PROTEIN-LIKE 2	UniProtKB/Swiss-Prot
Pfam	zf-RING_2	UniProtKB/Swiss-Prot
PhenoGen	Pja2	PhenoGen
PROSITE	ZF_RING_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015528	RatGTEx
SMART	RING	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHM9	ENTREZGENE, UniProtKB/TrEMBL
	A6JRB0	ENTREZGENE, UniProtKB/TrEMBL
	A6JRB1	ENTREZGENE, UniProtKB/TrEMBL
	PJA2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-03	Pja2	praja ring finger ubiquitin ligase 2	Pja2	praja ring finger 2, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Pja2	praja ring finger 2, E3 ubiquitin protein ligase	Pja2	praja ring finger 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-02	Pja2	praja ring finger 2	Pja2	praja 2, RING-H2 motif containing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Pja2	praja 2, RING-H2 motif containing	Neurodap1	protein carrying the RING-H2 sequence motif	Symbol and Name updated	1299863	APPROVED
2002-08-07	Neurodap1	rotein carrying the RING-H2 sequence motif			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the endoplasmic reticulum and Golgi apparatus	633395

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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