Sh3bp5 (SH3-domain binding protein 5) - Rat Genome Database

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Pathways
Gene: Sh3bp5 (SH3-domain binding protein 5) Rattus norvegicus
Analyze
Symbol: Sh3bp5 (Ensembl: Mettl6)
Name: SH3-domain binding protein 5 (Ensembl:methyltransferase 6, tRNA N3-cytidine)
RGD ID: 620220
Description: Predicted to enable guanyl-nucleotide exchange factor activity and protein kinase inhibitor activity. Predicted to be involved in intracellular signal transduction. Located in mitochondrion. Orthologous to human SH3BP5 (SH3 domain binding protein 5); INTERACTS WITH (+)-schisandrin B; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Sab; SH3 domain-binding protein 5; SH3-domain binding protein 5 (BTK-associated); SH3BP-5; vascular endothelial cell-specific protein 18; Vesp18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,589,877 - 6,676,524 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,589,877 - 6,655,211 (-)EnsemblGRCr8
mRatBN7.2166,583,462 - 6,678,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,583,465 - 6,698,975 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,595,768 - 6,660,252 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,740,664 - 7,805,146 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,602,675 - 6,667,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,473,367 - 7,559,976 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,473,370 - 7,538,201 (-)Ensemblrn6Rnor6.0
Rnor_5.0167,408,996 - 7,472,907 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,822,512 - 6,888,922 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,541,799 - 8,606,037 (+)NCBICelera
RGSC_v3.1166,822,512 - 6,888,920 (-)NCBI
Cytogenetic Map16p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
Ampullosporin  (EXP)
Aroclor 1254  (ISO)
arotinoid acid  (ISO)
Bardoxolone methyl  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP,ISO)
capsaicin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CHIR 99021  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
flutamide  (EXP)
furan  (EXP)
glafenine  (EXP)
indometacin  (ISO)
ketamine  (EXP)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
leflunomide  (EXP)
levofloxacin  (EXP)
metformin  (EXP)
methapyrilene  (EXP,ISO)
methylseleninic acid  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-Nitrosopyrrolidine  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
senecionine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tauroursodeoxycholic acid  (EXP)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3. Court NW, etal., Biochem Biophys Res Commun. 2004 Jun 18;319(1):130-7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. A new c-Jun N-terminal kinase (JNK)-interacting protein, Sab (SH3BP5), associates with mitochondria. Wiltshire C, etal., Biochem J 2002 Nov 1;367(Pt 3):577-85.
Additional References at PubMed
PMID:10339589   PMID:30217979  


Genomics

Comparative Map Data
Sh3bp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,589,877 - 6,676,524 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,589,877 - 6,655,211 (-)EnsemblGRCr8
mRatBN7.2166,583,462 - 6,678,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,583,465 - 6,698,975 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,595,768 - 6,660,252 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,740,664 - 7,805,146 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,602,675 - 6,667,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,473,367 - 7,559,976 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,473,370 - 7,538,201 (-)Ensemblrn6Rnor6.0
Rnor_5.0167,408,996 - 7,472,907 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,822,512 - 6,888,922 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,541,799 - 8,606,037 (+)NCBICelera
RGSC_v3.1166,822,512 - 6,888,920 (-)NCBI
Cytogenetic Map16p16NCBI
SH3BP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,254,353 - 15,341,380 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,254,353 - 15,341,368 (-)Ensemblhg38GRCh38
GRCh37315,295,860 - 15,382,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,271,361 - 15,357,905 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34315,271,367 - 15,348,892NCBI
Celera315,234,616 - 15,321,139 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,231,318 - 15,318,336 (-)NCBIHuRef
CHM1_1315,246,746 - 15,333,790 (-)NCBICHM1_1
T2T-CHM13v2.0315,256,759 - 15,343,784 (-)NCBIT2T-CHM13v2.0
Sh3bp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,094,571 - 31,158,056 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,081,837 - 31,158,035 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381431,372,614 - 31,436,100 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,359,880 - 31,436,078 (-)Ensemblmm10GRCm38
MGSCv371432,187,141 - 32,249,219 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361430,203,993 - 30,264,870 (-)NCBIMGSCv36mm8
Celera1427,632,639 - 27,694,829 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.11NCBI
Sh3bp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,196,967 - 2,264,953 (+)Ensembl
ChiLan1.0NW_0049554302,251,544 - 2,266,166 (+)NCBIChiLan1.0ChiLan1.0
SH3BP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,239,521 - 15,317,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,244,282 - 15,321,989 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,180,369 - 15,257,951 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,517,447 - 15,594,971 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,517,447 - 15,594,971 (-)EnsemblpanPan2panpan1.1
SH3BP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12327,258,502 - 27,335,175 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2327,202,875 - 27,334,010 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2327,232,632 - 27,309,150 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02327,770,472 - 27,847,079 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2327,715,728 - 27,847,075 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12327,460,017 - 27,536,480 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,521,691 - 27,598,215 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,770,953 - 27,847,541 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sh3bp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,965,168 - 169,971,857 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,038,963 - 3,109,174 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,103,878 - 3,110,435 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,506,156 - 2,585,526 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1132,504,282 - 2,585,601 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,433,078 - 2,512,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SH3BP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,098,901 - 60,175,421 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,100,132 - 60,175,349 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604133,128,495 - 33,204,981 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3bp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,950,735 - 5,021,337 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248224,950,735 - 5,021,233 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sh3bp5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1137,092,509 - 7,158,211 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sh3bp5
822 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:495
Count of miRNA genes:254
Interacting mature miRNAs:314
Transcripts:ENSRNOT00000026389
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161177108157035Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
D16Rat124  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8166,610,899 - 6,611,026 (+)Marker Load Pipeline
mRatBN7.2166,604,487 - 6,604,614 (+)MAPPERmRatBN7.2
Rnor_6.0167,494,390 - 7,494,516NCBIRnor6.0
Rnor_5.0167,429,574 - 7,429,700UniSTSRnor5.0
RGSC_v3.4166,844,488 - 6,844,614RGDRGSC3.4
RGSC_v3.4166,844,489 - 6,844,615UniSTSRGSC3.4
Celera168,584,954 - 8,585,080UniSTS
RGSC_v3.1166,844,486 - 6,844,612RGD
RH 3.4 Map1654.4UniSTS
RH 3.4 Map1654.4RGD
RH 2.0 Map160.0RGD
Cytogenetic Map16p16UniSTS
BE107294  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,583,462 - 6,583,641 (+)MAPPERmRatBN7.2
Rnor_6.0167,473,365 - 7,473,543NCBIRnor6.0
Rnor_5.0167,408,994 - 7,409,172UniSTSRnor5.0
RGSC_v3.4166,822,510 - 6,822,688UniSTSRGSC3.4
Celera168,605,861 - 8,606,039UniSTS
RH 3.4 Map1650.4UniSTS
Cytogenetic Map16p16UniSTS
SH3BP5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,588,163 - 6,588,259 (+)MAPPERmRatBN7.2
Rnor_6.0167,478,066 - 7,478,161NCBIRnor6.0
Rnor_5.0167,413,694 - 7,413,789UniSTSRnor5.0
RGSC_v3.4166,828,023 - 6,828,118UniSTSRGSC3.4
Celera168,601,243 - 8,601,338UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000082172   ⟹   ENSRNOP00000071111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,589,877 - 6,655,211 (-)Ensembl
mRatBN7.2 Ensembl166,583,465 - 6,648,399 (-)Ensembl
Rnor_6.0 Ensembl167,473,370 - 7,538,201 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084645   ⟹   ENSRNOP00000074466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,682,837 - 6,698,975 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098759   ⟹   ENSRNOP00000088603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,583,465 - 6,652,738 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103715   ⟹   ENSRNOP00000081006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,589,877 - 6,635,808 (-)Ensembl
mRatBN7.2 Ensembl166,583,465 - 6,629,398 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104042   ⟹   ENSRNOP00000086596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,682,834 - 6,697,749 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110815   ⟹   ENSRNOP00000078582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,589,877 - 6,655,211 (-)Ensembl
mRatBN7.2 Ensembl166,583,465 - 6,698,975 (-)Ensembl
RefSeq Acc Id: NM_054011   ⟹   NP_446463
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,654,711 (-)NCBI
mRatBN7.2166,583,465 - 6,648,301 (-)NCBI
Rnor_6.0167,473,367 - 7,538,201 (-)NCBI
Rnor_5.0167,408,996 - 7,472,907 (-)NCBI
RGSC_v3.4166,822,512 - 6,888,922 (-)RGD
Celera168,541,799 - 8,606,037 (+)RGD
Sequence:
RefSeq Acc Id: XM_039094171   ⟹   XP_038950099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,654,820 (-)NCBI
mRatBN7.2166,583,462 - 6,648,528 (-)NCBI
RefSeq Acc Id: XM_039094172   ⟹   XP_038950100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,604,090 (-)NCBI
mRatBN7.2166,583,462 - 6,597,714 (-)NCBI
RefSeq Acc Id: XM_039094174   ⟹   XP_038950102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,676,524 (-)NCBI
mRatBN7.2166,583,462 - 6,670,101 (-)NCBI
RefSeq Acc Id: XM_063275045   ⟹   XP_063131115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,629,492 (-)NCBI
RefSeq Acc Id: XM_063275046   ⟹   XP_063131116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,589,877 - 6,651,760 (-)NCBI
RefSeq Acc Id: NP_446463   ⟸   NM_054011
- UniProtKB: Q91Y80 (UniProtKB/Swiss-Prot),   A6KFZ4 (UniProtKB/TrEMBL),   A6KFZ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071111   ⟸   ENSRNOT00000082172
RefSeq Acc Id: XP_038950102   ⟸   XM_039094174
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950099   ⟸   XM_039094171
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UQ41 (UniProtKB/TrEMBL),   A6KFZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950100   ⟸   XM_039094172
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000086596   ⟸   ENSRNOT00000104042
Ensembl Acc Id: ENSRNOP00000074466   ⟸   ENSRNOT00000084645
Ensembl Acc Id: ENSRNOP00000088603   ⟸   ENSRNOT00000098759
Ensembl Acc Id: ENSRNOP00000078582   ⟸   ENSRNOT00000110815
Ensembl Acc Id: ENSRNOP00000081006   ⟸   ENSRNOT00000103715
RefSeq Acc Id: XP_063131116   ⟸   XM_063275046
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063131115   ⟸   XM_063275045
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91Y80-F1-model_v2 AlphaFold Q91Y80 1-457 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699933
Promoter ID:EPDNEW_R10456
Type:initiation region
Name:Sh3bp5_1
Description:SH3-domain binding protein 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0167,538,277 - 7,538,337EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620220 AgrOrtholog
BioCyc Gene G2FUF-12147 BioCyc
Ensembl Genes ENSRNOG00000052391 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082172 ENTREZGENE
  ENSRNOT00000110815 ENTREZGENE
InterPro SH3BP5 UniProtKB/Swiss-Prot
KEGG Report rno:117186 UniProtKB/Swiss-Prot
NCBI Gene 117186 ENTREZGENE
PANTHER PTHR19423 UniProtKB/Swiss-Prot
  SH3 DOMAIN-BINDING PROTEIN 5 UniProtKB/Swiss-Prot
Pfam SH3BP5 UniProtKB/Swiss-Prot
PhenoGen Sh3bp5 PhenoGen
RatGTEx ENSRNOG00000052391 RatGTEx
UniProt 3BP5_RAT UniProtKB/Swiss-Prot
  A0A8I5ZL43_RAT UniProtKB/TrEMBL
  A0A8I5ZS33_RAT UniProtKB/TrEMBL
  A0A8L2UQ41 ENTREZGENE, UniProtKB/TrEMBL
  A6KFZ3 ENTREZGENE, UniProtKB/TrEMBL
  A6KFZ4 ENTREZGENE, UniProtKB/TrEMBL
  Q91Y80 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Sh3bp5  SH3-domain binding protein 5  Sh3bp5  SH3-domain binding protein 5 (BTK-associated)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Sh3bp5  SH3-domain binding protein 5 (BTK-associated)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Sh3bp5  SH3-domain binding protein 5 (BTK-associated)      Symbol and Name status set to provisional 70820 PROVISIONAL