Fgl1 (fibrinogen-like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Fgl1 (fibrinogen-like 1) Rattus norvegicus
Analyze
Symbol: Fgl1
Name: fibrinogen-like 1
RGD ID: 620169
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including hepatocyte proliferation; negative regulation of T cell activation; and response to stilbenoid. Predicted to act upstream of or within adipose tissue development; cholesterol metabolic process; and regulation of glucose metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human FGL1 (fibrinogen like 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fibrinogen-like protein 1; fibrinogen-related protein 1; fibronigen-like protein 1; Frep1; Lfire1; liver fibrinogen-related protein 1; MGC108569
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81657,824,127 - 57,854,413 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1657,824,200 - 57,854,429 (+)EnsemblGRCr8
mRatBN7.21651,120,652 - 51,150,907 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,120,694 - 51,151,093 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1656,440,596 - 56,470,768 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01659,839,687 - 59,869,895 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01655,074,531 - 55,104,703 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01654,153,086 - 54,188,120 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,153,054 - 54,188,181 (+)Ensemblrn6Rnor6.0
Rnor_5.01653,866,814 - 53,900,250 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41654,434,779 - 54,465,928 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1649,015,798 - 49,045,955 (+)NCBICelera
RGSC_v3.11654,434,853 - 54,465,998 (+)NCBI
Cytogenetic Map16q12.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
butanal  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
calcium silicate  (ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
glafenine  (EXP)
inulin  (ISO)
isobutanol  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
levofloxacin  (EXP)
lipopolysaccharide  (ISO)
naphthalene  (ISO)
naproxen  (EXP)
nefazodone  (EXP)
nitrofen  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
senecionine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sumatriptan  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Cloning and characterization of a mouse liver-specific gene mfrep-1, up-regulated in liver regeneration. Yan J, etal., Cell Res 2002 Dec;12(5-6):353-61.
Additional References at PubMed
PMID:12477932   PMID:17086191   PMID:19880967   PMID:23376485   PMID:23483972   PMID:25901902   PMID:30580966  


Genomics

Comparative Map Data
Fgl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81657,824,127 - 57,854,413 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1657,824,200 - 57,854,429 (+)EnsemblGRCr8
mRatBN7.21651,120,652 - 51,150,907 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,120,694 - 51,151,093 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1656,440,596 - 56,470,768 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01659,839,687 - 59,869,895 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01655,074,531 - 55,104,703 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01654,153,086 - 54,188,120 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,153,054 - 54,188,181 (+)Ensemblrn6Rnor6.0
Rnor_5.01653,866,814 - 53,900,250 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41654,434,779 - 54,465,928 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1649,015,798 - 49,045,955 (+)NCBICelera
RGSC_v3.11654,434,853 - 54,465,998 (+)NCBI
Cytogenetic Map16q12.1NCBI
FGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38817,864,389 - 17,895,538 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl817,863,528 - 17,910,378 (-)Ensemblhg38GRCh38
GRCh37817,721,898 - 17,753,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,766,180 - 17,797,327 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34817,766,181 - 17,797,327NCBI
Celera816,687,655 - 16,718,923 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef816,265,901 - 16,296,907 (-)NCBIHuRef
CHM1_1817,923,349 - 17,954,500 (-)NCBICHM1_1
T2T-CHM13v2.0818,131,895 - 18,183,454 (-)NCBIT2T-CHM13v2.0
Fgl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,644,471 - 41,671,015 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,644,471 - 41,668,193 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38841,191,434 - 41,217,978 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl841,191,434 - 41,215,156 (-)Ensemblmm10GRCm38
MGSCv37842,276,788 - 42,300,510 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36842,690,251 - 42,713,941 (-)NCBIMGSCv36mm8
Celera843,821,071 - 43,843,765 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Fgl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555521,783,412 - 1,813,935 (+)Ensembl
ChiLan1.0NW_0049555521,784,046 - 1,813,935 (+)NCBIChiLan1.0ChiLan1.0
FGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2736,338,681 - 36,384,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1812,065,166 - 12,109,854 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0817,083,524 - 17,128,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1814,035,855 - 14,066,956 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl814,035,855 - 14,066,956 (-)EnsemblpanPan2panpan1.1
FGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11641,161,314 - 41,191,282 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1641,161,394 - 41,179,791 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1641,670,263 - 41,700,258 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01643,219,744 - 43,249,744 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1643,219,761 - 43,249,700 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11641,312,415 - 41,342,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,856,289 - 41,887,835 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01642,051,073 - 42,081,082 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fgl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494338,141,295 - 38,174,859 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936614431,631 - 450,034 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936614431,537 - 452,174 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,547,126 - 5,576,790 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,546,931 - 5,596,434 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2176,073,405 - 6,099,351 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1815,962,625 - 16,016,118 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl815,962,053 - 15,982,336 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605226,283,462 - 26,314,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476921,308,280 - 21,350,026 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476921,308,319 - 21,350,026 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fgl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11346,346,695 - 46,376,882 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fgl1
195 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:17
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000014248
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 8 14 45 79 84 53 17 53 6 141 44 30 28 44 31

Sequence


Ensembl Acc Id: ENSRNOT00000014248   ⟹   ENSRNOP00000014248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1657,824,200 - 57,854,428 (+)Ensembl
mRatBN7.2 Ensembl1651,120,694 - 51,150,905 (+)Ensembl
Rnor_6.0 Ensembl1654,153,086 - 54,188,118 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090644   ⟹   ENSRNOP00000073912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1657,834,709 - 57,854,429 (+)Ensembl
mRatBN7.2 Ensembl1651,120,694 - 51,151,093 (+)Ensembl
Rnor_6.0 Ensembl1654,153,054 - 54,188,181 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090763   ⟹   ENSRNOP00000075300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,120,694 - 51,147,104 (+)Ensembl
Rnor_6.0 Ensembl1654,164,431 - 54,184,559 (+)Ensembl
RefSeq Acc Id: NM_172010   ⟹   NP_742007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,824,200 - 57,854,408 (+)NCBI
mRatBN7.21651,120,694 - 51,150,907 (+)NCBI
Rnor_6.01654,153,086 - 54,188,120 (+)NCBI
Rnor_5.01653,866,814 - 53,900,250 (+)NCBI
RGSC_v3.41654,434,779 - 54,465,928 (+)RGD
Celera1649,015,798 - 49,045,955 (+)RGD
Sequence:
RefSeq Acc Id: XM_039094195   ⟹   XP_038950123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,824,127 - 57,854,413 (+)NCBI
mRatBN7.21651,120,652 - 51,150,811 (+)NCBI
Protein Sequences
Protein RefSeqs NP_742007 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950123 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88107 (Get FASTA)   NCBI Sequence Viewer  
  AAM34682 (Get FASTA)   NCBI Sequence Viewer  
  EDL78830 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014248
  ENSRNOP00000014248.7
  ENSRNOP00000073912
GenBank Protein Q5M8C6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_742007   ⟸   NM_172010
- Peptide Label: precursor
- UniProtKB: Q5M8C6 (UniProtKB/Swiss-Prot),   A6JPU2 (UniProtKB/TrEMBL),   Q8K583 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073912   ⟸   ENSRNOT00000090644
Ensembl Acc Id: ENSRNOP00000075300   ⟸   ENSRNOT00000090763
Ensembl Acc Id: ENSRNOP00000014248   ⟸   ENSRNOT00000014248
RefSeq Acc Id: XP_038950123   ⟸   XM_039094195
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R9U7 (UniProtKB/TrEMBL),   Q8K583 (UniProtKB/TrEMBL)
Protein Domains
Fibrinogen C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M8C6-F1-model_v2 AlphaFold Q5M8C6 1-314 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700118
Promoter ID:EPDNEW_R10641
Type:initiation region
Name:Fgl1_1
Description:fibrinogen-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01654,153,086 - 54,153,146EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620169 AgrOrtholog
BioCyc Gene G2FUF-11258 BioCyc
Ensembl Genes ENSRNOG00000010714 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014248 ENTREZGENE
  ENSRNOT00000014248.7 UniProtKB/Swiss-Prot
  ENSRNOT00000090644 ENTREZGENE
Gene3D-CATH 3.90.215.10 UniProtKB/Swiss-Prot
  Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7368731 IMAGE-MGC_LOAD
InterPro Fibrinogen UniProtKB/Swiss-Prot
  Fibrinogen-like_C UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_1 UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_dom UniProtKB/Swiss-Prot
  Fibrinogen_CS UniProtKB/Swiss-Prot
KEGG Report rno:246186 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108569 IMAGE-MGC_LOAD
NCBI Gene 246186 ENTREZGENE
PANTHER FIBRINOGEN ALPHA CHAIN UniProtKB/Swiss-Prot
  FIBRINOGEN LIKE 1A UniProtKB/Swiss-Prot
Pfam Fibrinogen_C UniProtKB/Swiss-Prot
PhenoGen Fgl1 PhenoGen
PROSITE FIBRINOGEN_C_1 UniProtKB/Swiss-Prot
  FIBRINOGEN_C_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010714 RatGTEx
SMART FBG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56496 UniProtKB/Swiss-Prot
UniProt A0A8L2R9U7 ENTREZGENE, UniProtKB/TrEMBL
  A6JPU2 ENTREZGENE, UniProtKB/TrEMBL
  FGL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8K583 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-19 Fgl1  fibrinogen-like 1  Fgl1  fibronigen-like protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Fgl1  fibronigen-like protein 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Fgl1  fibronigen-like protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL