Rbm3 (RNA binding motif protein 3) - Rat Genome Database

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Gene: Rbm3 (RNA binding motif protein 3) Rattus norvegicus
Analyze
Symbol: Rbm3
Name: RNA binding motif protein 3
RGD ID: 620145
Description: Predicted to enable RNA binding activity and ribosomal large subunit binding activity. Involved in positive regulation of translation. Located in cytoplasm; dendrite; and nucleus. Part of large ribosomal subunit. Orthologous to human RBM3 (RNA binding motif protein 3); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC105811; putative RNA-binding protein 3; RNA binding motif (RNP1, RRM) protein 3; RNA-binding motif protein 3; RNA-binding protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,020,863 - 17,024,341 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX17,020,864 - 17,024,841 (+)EnsemblGRCr8
mRatBN7.2X14,348,909 - 14,352,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,348,910 - 14,353,580 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,162,253 - 19,165,690 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,917,390 - 20,920,827 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X17,182,581 - 17,186,018 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,098,880 - 15,102,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,098,904 - 15,102,340 (+)Ensemblrn6Rnor6.0
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,379,303 - 26,382,739 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,434,002 - 14,437,438 (+)NCBICelera
RGSC_v3.1X26,432,807 - 26,434,835 (+)NCBI
Cytogenetic MapXq12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3',5'-cyclic UMP  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
acrylamide  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
CCCP  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
ciprofibrate  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
glucose  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
methamphetamine  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nickel atom  (ISO)
ochratoxin A  (EXP)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenytoin  (EXP)
pirinixic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
senecionine  (ISO)
sevoflurane  (EXP)
sodium arsenite  (ISO)
sodium azide  (ISO)
sodium dichromate  (EXP,ISO)
Soman  (EXP)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
trichloroethene  (EXP)
triptonide  (ISO)
tungsten  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA,IEA)
dendrite  (IDA,IEA)
large ribosomal subunit  (IDA)
nucleoplasm  (IEA,ISO)
nucleus  (IDA,IEA)
spliceosomal complex  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The internal ribosome entry site (IRES) contained within the RNA-binding motif protein 3 (Rbm3) mRNA is composed of functionally distinct elements. Chappell SA and Mauro VP, J Biol Chem 2003 Sep 5;278(36):33793-800. Epub 2003 Jun 24.
2. A 5' Leader of Rbm3, a Cold Stress-induced mRNA, Mediates Internal Initiation of Translation with Increased Efficiency under Conditions of Mild Hypothermia. Chappell SA, etal., J Biol Chem 2001 Oct 5;276(40):36917-22.
3. Cold stress-induced protein Rbm3 binds 60S ribosomal subunits, alters microRNA levels, and enhances global protein synthesis. Dresios J, etal., Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1865-70. Epub 2005 Jan 31.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Two isoforms of the cold-inducible mRNA-binding protein RBM3 localize to dendrites and promote translation. Smart F, etal., J Neurochem. 2007 Jun;101(5):1367-79. Epub 2007 Mar 30.
Additional References at PubMed
PMID:12477932   PMID:18753264   PMID:19150436   PMID:22658674   PMID:22681889   PMID:24570111   PMID:24668366   PMID:26265550   PMID:30051360   PMID:33310754   PMID:35352799   PMID:38555015  


Genomics

Comparative Map Data
Rbm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,020,863 - 17,024,341 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX17,020,864 - 17,024,841 (+)EnsemblGRCr8
mRatBN7.2X14,348,909 - 14,352,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,348,910 - 14,353,580 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,162,253 - 19,165,690 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,917,390 - 20,920,827 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X17,182,581 - 17,186,018 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,098,880 - 15,102,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,098,904 - 15,102,340 (+)Ensemblrn6Rnor6.0
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,379,303 - 26,382,739 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,434,002 - 14,437,438 (+)NCBICelera
RGSC_v3.1X26,432,807 - 26,434,835 (+)NCBI
Cytogenetic MapXq12NCBI
RBM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,574,484 - 48,581,162 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,574,056 - 48,581,162 (+)Ensemblhg38GRCh38
GRCh37X48,432,872 - 48,439,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,317,780 - 48,321,748 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X48,189,165 - 48,192,925NCBI
CeleraX53,228,934 - 53,232,902 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,096,108 - 46,133,256 (+)NCBIHuRef
CHM1_1X48,463,982 - 48,470,795 (+)NCBICHM1_1
T2T-CHM13v2.0X47,983,492 - 47,990,170 (+)NCBIT2T-CHM13v2.0
Rbm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X8,005,214 - 8,012,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX8,005,214 - 8,012,119 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X8,138,975 - 8,145,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,138,975 - 8,145,880 (-)Ensemblmm10GRCm38
MGSCv37X7,716,101 - 7,722,928 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X7,297,026 - 7,302,656 (-)NCBIMGSCv36mm8
CeleraX3,323,024 - 3,329,740 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.68NCBI
Rbm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543166,891 - 170,488 (+)Ensembl
ChiLan1.0NW_004955543166,891 - 173,987 (+)NCBIChiLan1.0ChiLan1.0
RBM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,063,352 - 50,067,217 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,066,705 - 50,070,388 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,872,745 - 40,876,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,734,777 - 48,738,077 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,734,777 - 48,738,077 (+)EnsemblpanPan2panpan1.1
RBM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,806,072 - 41,809,803 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,806,176 - 41,809,481 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX16,182,453 - 16,195,810 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X50,268,433 - 50,272,150 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX50,268,437 - 50,272,105 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,929,113 - 41,942,467 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,917,468 - 41,925,838 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,011,225 - 42,024,586 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,307,320 - 34,310,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721547,777 - 551,270 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936721547,751 - 551,273 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,704,028 - 42,707,577 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X42,704,019 - 42,707,587 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,591,642 - 47,595,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,702,974 - 45,707,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX45,702,275 - 45,707,075 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607611,178,027 - 11,182,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893403,916 - 411,708 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624893403,831 - 407,772 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbm3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X15,545,712 - 15,549,212 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbm3
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:177
Interacting mature miRNAs:208
Transcripts:ENSRNOT00000007367
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH127858  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,351,994 - 14,352,178 (+)MAPPERmRatBN7.2
Rnor_6.0X15,101,949 - 15,102,132NCBIRnor6.0
Rnor_5.0X15,885,110 - 15,885,293UniSTSRnor5.0
RGSC_v3.4X26,382,348 - 26,382,531UniSTSRGSC3.4
CeleraX14,437,047 - 14,437,230UniSTS
RH 3.4 MapX125.0UniSTS
Cytogenetic MapXq13UniSTS
MARC_3075-3076:991936711:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X17,021,603 - 17,022,371 (+)Marker Load Pipeline
mRatBN7.2X14,349,648 - 14,350,416 (+)MAPPERmRatBN7.2
Rnor_6.0X15,099,603 - 15,100,370NCBIRnor6.0
Rnor_5.0X15,882,764 - 15,883,531UniSTSRnor5.0
RGSC_v3.4X26,380,002 - 26,380,769UniSTSRGSC3.4
CeleraX14,434,701 - 14,435,468UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_362374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF355190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA340698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN933310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY319481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007367   ⟹   ENSRNOP00000007367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX17,020,896 - 17,024,338 (+)Ensembl
mRatBN7.2 EnsemblX14,348,975 - 14,352,386 (+)Ensembl
Rnor_6.0 EnsemblX15,098,904 - 15,102,340 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087033   ⟹   ENSRNOP00000069156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX17,020,864 - 17,024,338 (+)Ensembl
mRatBN7.2 EnsemblX14,348,993 - 14,352,381 (+)Ensembl
Rnor_6.0 EnsemblX15,098,947 - 15,102,332 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094523   ⟹   ENSRNOP00000081665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX17,020,896 - 17,024,841 (+)Ensembl
mRatBN7.2 EnsemblX14,348,910 - 14,353,580 (+)Ensembl
RefSeq Acc Id: NM_053696   ⟹   NP_446148
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,020,905 - 17,024,341 (+)NCBI
mRatBN7.2X14,348,950 - 14,352,386 (+)NCBI
Rnor_6.0X15,098,904 - 15,102,340 (+)NCBI
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBI
RGSC_v3.4X26,379,303 - 26,382,739 (+)RGD
CeleraX14,434,002 - 14,437,438 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256694   ⟹   XP_006256756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,020,863 - 17,024,341 (+)NCBI
mRatBN7.2X14,348,909 - 14,352,387 (+)NCBI
Rnor_6.0X15,098,882 - 15,102,344 (+)NCBI
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256695   ⟹   XP_006256757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,020,863 - 17,024,341 (+)NCBI
mRatBN7.2X14,348,909 - 14,352,386 (+)NCBI
Rnor_6.0X15,098,882 - 15,102,344 (+)NCBI
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256696   ⟹   XP_006256758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,020,863 - 17,024,341 (+)NCBI
mRatBN7.2X14,348,909 - 14,352,386 (+)NCBI
Rnor_6.0X15,098,882 - 15,102,344 (+)NCBI
Rnor_5.0X15,882,043 - 15,885,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279735   ⟹   XP_063135805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,021,949 - 17,024,341 (+)NCBI
RefSeq Acc Id: XM_063279736   ⟹   XP_063135806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,021,949 - 17,024,341 (+)NCBI
RefSeq Acc Id: NP_446148   ⟸   NM_053696
- UniProtKB: Q925G0 (UniProtKB/Swiss-Prot),   G3V6P6 (UniProtKB/TrEMBL),   A6KP47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256756   ⟸   XM_006256694
- Peptide Label: isoform X1
- UniProtKB: Q925G0 (UniProtKB/Swiss-Prot),   G3V6P6 (UniProtKB/TrEMBL),   A6KP47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256757   ⟸   XM_006256695
- Peptide Label: isoform X2
- UniProtKB: Q925G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006256758   ⟸   XM_006256696
- Peptide Label: isoform X2
- UniProtKB: Q925G0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069156   ⟸   ENSRNOT00000087033
Ensembl Acc Id: ENSRNOP00000007367   ⟸   ENSRNOT00000007367
Ensembl Acc Id: ENSRNOP00000081665   ⟸   ENSRNOT00000094523
RefSeq Acc Id: XP_063135805   ⟸   XM_063279735
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063135806   ⟸   XM_063279736
- Peptide Label: isoform X3
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925G0-F1-model_v2 AlphaFold Q925G0 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701730
Promoter ID:EPDNEW_R12254
Type:multiple initiation site
Name:Rbm3_1
Description:RNA binding motif protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X15,098,927 - 15,098,987EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620145 AgrOrtholog
BioCyc Gene G2FUF-2947 BioCyc
Ensembl Genes ENSRNOG00000005387 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000007367 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7318884 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM UniProtKB/Swiss-Prot
  RBM3/CIRBP_RRM UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:114488 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105811 IMAGE-MGC_LOAD
NCBI Gene 114488 ENTREZGENE
PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbm3 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005387 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A0G2JUM7_RAT UniProtKB/TrEMBL
  A0A8I5ZVH4_RAT UniProtKB/TrEMBL
  A6KP47 ENTREZGENE, UniProtKB/TrEMBL
  G3V6P6 ENTREZGENE, UniProtKB/TrEMBL
  Q5PPI5_RAT UniProtKB/TrEMBL
  Q925G0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-09 Rbm3  RNA binding motif protein 3  Rbm3  RNA binding motif (RNP1, RRM) protein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Rbm3  RNA binding motif (RNP1, RRM) protein 3  Rbm3  RNA binding motif protein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Rbm3  RNA binding motif protein 3    RNA binding motif (RNP1, RRM) protein 3  Name updated 1299863 APPROVED
2004-09-10 Rbm3  RNA binding motif (RNP1, RRM) protein 3    RNA binding motif protein 3  Name updated 1299863 APPROVED
2002-08-07 Rbm3  RNA binding motif protein 3      Symbol and Name status set to provisional 70820 PROVISIONAL