Advanced Search (OLGA)

Gene: Mgat5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase) Rattus norvegicus

Analyze

Symbol:

Mgat5

Name:

alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase

RGD ID:

620100

Description:

Predicted to enable alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity; manganese ion binding activity; and protein phosphatase inhibitor activity. Predicted to be involved in positive regulation of cell migration; positive regulation of receptor signaling pathway via STAT; and protein N-linked glycosylation via asparagine. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Used to study proteinuria. Orthologous to human MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like; alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase; glcNAc-T V; GNT-V; LOC100909582; LOC679424; mannoside acetylglucosaminyltransferase 5; mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase; N-acetylglucosaminyl-transferase V; N-acetylglucosaminyltransferase V; similar to Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,228,327 - 41,516,462 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	41,228,360 - 41,516,461 (+)	Ensembl				GRCr8
mRatBN7.2	13	38,675,776 - 38,959,697 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	38,676,119 - 38,959,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	41,257,822 - 41,541,653 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	42,545,922 - 42,829,754 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	39,811,828 - 40,095,552 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	43,850,744 - 44,157,860 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	43,850,751 - 44,157,924 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	49,012,580 - 49,250,496 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	39,900,089 - 40,135,002 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	39,217,802 - 39,336,884 (+)	NCBI		Celera
RGSC_v3.1	13	40,113,779 - 40,149,045 (+)	NCBI
Cytogenetic Map	13	q12-q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Enterovirus Infections (ISO)

Experimental Liver Cirrhosis (ISO)

proteinuria (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

flavonoids (EXP)

gentamycin (EXP)

lipopolysaccharide (ISO)

mercury atom (EXP)

mercury(0) (EXP)

methotrexate (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

potassium chromate (ISO)

propofol (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

senecionine (ISO)

sevoflurane (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell migration (IEA,ISO)

positive regulation of receptor signaling pathway via STAT (IEA,ISO)

protein N-linked glycosylation (IBA,IEA,ISO,ISS)

Cellular Component

extracellular region (IEA)

Golgi apparatus (IBA,IEA,ISO)

Golgi membrane (IEA,ISS)

membrane (IEA,ISO)

Molecular Function

acetylglucosaminyltransferase activity (IEA,ISO)

alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity (IBA,IEA,ISO,ISS)

glycosyltransferase activity (IEA,ISO)

manganese ion binding (IEA,ISO,ISS)

protein phosphatase inhibitor activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

N-linked glycan biosynthetic pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

salt-sensitive hypertension (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Narrowing a region on rat chromosome 13 that protects against hypertension in Dahl SS-13BN congenic strains.	Moreno C, etal., Am J Physiol Heart Circ Physiol. 2011 Apr;300(4):H1530-5. doi: 10.1152/ajpheart.01026.2010. Epub 2011 Jan 21.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Isolation, characterization, and expression of a cDNA encoding N-acetylglucosaminyltransferase V.	Shoreibah M, etal., J Biol Chem 1993 Jul 25;268(21):15381-5.

Additional References at PubMed

PMID:10395745	PMID:14561752	PMID:16413118	PMID:18064521	PMID:18343992	PMID:23376485	PMID:23533145	PMID:24619415	PMID:24846175	PMID:30140003	PMID:38499842

Genomics

Comparative Map Data

Mgat5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,228,327 - 41,516,462 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	41,228,360 - 41,516,461 (+)	Ensembl				GRCr8
mRatBN7.2	13	38,675,776 - 38,959,697 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	38,676,119 - 38,959,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	41,257,822 - 41,541,653 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	42,545,922 - 42,829,754 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	39,811,828 - 40,095,552 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	43,850,744 - 44,157,860 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	43,850,751 - 44,157,924 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	49,012,580 - 49,250,496 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	39,900,089 - 40,135,002 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	39,217,802 - 39,336,884 (+)	NCBI		Celera
RGSC_v3.1	13	40,113,779 - 40,149,045 (+)	NCBI
Cytogenetic Map	13	q12-q13	NCBI

MGAT5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	134,119,935 - 134,454,621 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	134,119,933 - 134,454,621 (+)	Ensembl			hg38	GRCh38
GRCh37	2	134,877,506 - 135,212,192 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	134,728,300 - 134,922,938 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	134,842,899 - 135,040,200	NCBI
Celera	2	128,724,443 - 128,919,142 (+)	NCBI		Celera
Cytogenetic Map	2	q21.2-q21.3	NCBI
HuRef	2	127,004,546 - 127,204,992 (+)	NCBI		HuRef
CHM1_1	2	135,016,473 - 135,216,821 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	134,559,395 - 134,894,193 (+)	NCBI		T2T-CHM13v2.0

Mgat5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,132,450 - 127,413,760 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,132,752 - 127,416,073 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	127,204,919 - 127,488,334 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,205,015 - 127,488,336 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	129,101,563 - 129,379,549 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,134,308 - 129,311,253 (+)	NCBI		MGSCv36	mm8
Celera	1	129,854,899 - 130,132,451 (+)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI
cM Map	1	55.71	NCBI

Mgat5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	1,786,874 - 1,999,281 (+)	Ensembl
ChiLan1.0	NW_004955440	1,705,018 - 2,004,838 (+)	NCBI	ChiLan1.0	ChiLan1.0

MGAT5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	40,463,767 - 40,793,973 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	40,478,737 - 40,808,944 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	25,394,435 - 25,724,420 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	138,284,310 - 138,544,621 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	138,344,539 - 138,538,857 (+)	Ensembl			panPan2	panpan1.1

MGAT5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	37,041,215 - 37,334,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	37,087,247 - 37,329,723 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	37,236,423 - 37,575,022 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	38,440,089 - 38,672,160 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	19	37,082,752 - 37,422,014 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	37,244,160 - 37,582,910 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	38,472,210 - 38,811,086 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mgat5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	83,742,596 - 84,069,959 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	57,674,982 - 57,875,107 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	57,615,755 - 57,875,156 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MGAT5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	17,544,806 - 17,918,555 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	17,544,806 - 17,919,273 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	20,023,165 - 20,366,014 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MGAT5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	18,357,893 - 18,686,009 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	18,487,693 - 18,685,669 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	3,813,320 - 4,147,620 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mgat5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	33,605,569 - 33,898,834 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	33,564,740 - 33,896,573 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mgat5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	8,256,105 - 8,542,572 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mgat5
2712 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	72
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000004995
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

D13Rat174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	41,246,717 - 41,247,010 (+)	Marker Load Pipeline
mRatBN7.2	13	38,694,180 - 38,694,475 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	43,589,777 - 43,590,069	NCBI	Rnor6.0
Rnor_5.0	13	48,689,916 - 48,690,208	UniSTS	Rnor5.0
Celera	13	38,015,416 - 38,015,708	UniSTS
SHRSP x BN Map	13	7.9399	RGD
SHRSP x BN Map	13	7.9399	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

D13Got11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,901,862 - 38,902,100 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,100,798 - 44,101,035	NCBI	Rnor6.0
Rnor_5.0	13	49,193,740 - 49,193,977	UniSTS	Rnor5.0
RGSC_v3.4	13	40,077,905 - 40,078,143	RGD	RGSC3.4
RGSC_v3.4	13	40,077,906 - 40,078,143	UniSTS	RGSC3.4
Celera	13	39,280,091 - 39,280,328	UniSTS
RGSC_v3.1	13	40,091,949 - 40,092,186	RGD
RH 3.4 Map	13	73.7	UniSTS
RH 3.4 Map	13	73.7	RGD
RH 2.0 Map	13	253.2	RGD
Cytogenetic Map	13	q11-q12	UniSTS

D13Got18

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,946,862 - 38,947,042 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,145,196 - 44,145,375	NCBI	Rnor6.0
Rnor_5.0	13	49,237,843 - 49,238,022	UniSTS	Rnor5.0
RGSC_v3.4	13	40,122,347 - 40,122,527	RGD	RGSC3.4
RGSC_v3.4	13	40,122,348 - 40,122,527	UniSTS	RGSC3.4
Celera	13	39,324,190 - 39,324,369	UniSTS
RGSC_v3.1	13	40,136,391 - 40,136,570	RGD
RH 3.4 Map	13	64.8	UniSTS
RH 3.4 Map	13	64.8	RGD
RH 2.0 Map	13	267.4	RGD
Cytogenetic Map	13	q11-q12	UniSTS

D13Got17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	48,662,532 - 48,662,807	NCBI	Rnor5.0
Rnor_5.0	13	49,015,787 - 49,015,980	NCBI	Rnor5.0
Rnor_5.0	13	48,662,533 - 48,662,808	NCBI	Rnor5.0
Rnor_5.0	13	49,015,786 - 49,015,979	NCBI	Rnor5.0
RGSC_v3.4	13	39,903,297 - 39,903,489	UniSTS	RGSC3.4
RGSC_v3.4	13	39,903,296 - 39,903,488	RGD	RGSC3.4
Celera	13	37,983,770 - 37,983,962	UniSTS
RGSC_v3.1	13	39,917,339 - 39,917,531	RGD
RH 3.4 Map	13	41.1	RGD
RH 3.4 Map	13	41.1	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

D13Hmgc40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,744,968 - 38,745,230 (+)	MAPPER	mRatBN7.2
mRatBN7.2	13	38,744,968 - 38,745,230 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	43,545,977 - 43,546,234	NCBI	Rnor6.0
Rnor_6.0	13	43,938,305 - 43,938,562	NCBI	Rnor6.0
Rnor_5.0	13	49,033,260 - 49,033,517	UniSTS	Rnor5.0
Rnor_5.0	13	48,645,307 - 48,645,564	UniSTS	Rnor5.0
Celera	13	37,966,255 - 37,966,512	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

RH139379

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,675,237 - 38,675,333 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	43,606,860 - 43,606,955	NCBI	Rnor6.0
Rnor_5.0	13	48,705,966 - 48,706,061	UniSTS	Rnor5.0
RGSC_v3.4	13	39,832,174 - 39,832,269	UniSTS	RGSC3.4
Celera	13	38,030,614 - 38,030,709	UniSTS
RH 3.4 Map	13	73.9	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

BF387978

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,882,990 - 38,883,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,081,933 - 44,082,112	NCBI	Rnor6.0
Rnor_5.0	13	49,174,875 - 49,175,054	UniSTS	Rnor5.0
RGSC_v3.4	13	40,059,040 - 40,059,219	UniSTS	RGSC3.4
Celera	13	39,261,284 - 39,261,463	UniSTS
RH 3.4 Map	13	71.5	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

BI292164

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,729,350 - 38,729,509 (-)	MAPPER	mRatBN7.2
mRatBN7.2	13	38,729,350 - 38,729,509 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	43,922,687 - 43,922,845	NCBI	Rnor6.0
Rnor_6.0	13	43,561,383 - 43,561,541	NCBI	Rnor6.0
Rnor_5.0	13	48,660,713 - 48,660,871	UniSTS	Rnor5.0
Rnor_5.0	13	49,017,642 - 49,017,800	UniSTS	Rnor5.0
RGSC_v3.4	13	39,905,151 - 39,905,309	UniSTS	RGSC3.4
Celera	13	37,981,950 - 37,982,108	UniSTS
RH 3.4 Map	13	74.3	UniSTS
Cytogenetic Map	13	q11-q12	UniSTS

STS-Z41143

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	38,744,247 - 38,745,331 (-)	MAPPER	mRatBN7.2
mRatBN7.2	13	38,744,247 - 38,745,331 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	43,937,584 - 43,938,663	NCBI	Rnor6.0
Rnor_6.0	13	43,545,876 - 43,546,955	NCBI	Rnor6.0
Rnor_5.0	13	49,032,539 - 49,033,618	UniSTS	Rnor5.0
Rnor_5.0	13	48,645,206 - 48,646,285	UniSTS	Rnor5.0
RGSC_v3.4	13	39,920,050 - 39,921,129	UniSTS	RGSC3.4
Cytogenetic Map	13	q11-q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	355	192	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB294577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB294578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L14284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004995 ⟹ ENSRNOP00000004995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	41,228,360 - 41,516,461 (+)	Ensembl
mRatBN7.2 Ensembl	13	38,676,119 - 38,959,513 (+)	Ensembl
Rnor_6.0 Ensembl	13	43,850,751 - 44,157,924 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073921 ⟹ ENSRNOP00000067101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	43,494,350 - 43,566,680 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100469 ⟹ ENSRNOP00000076422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	41,228,360 - 41,516,461 (+)	Ensembl
mRatBN7.2 Ensembl	13	38,676,119 - 38,959,513 (+)	Ensembl

RefSeq Acc Id:

NM_023095 ⟹ NP_075583

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,228,662 - 41,512,009 (+)	NCBI
mRatBN7.2	13	38,676,119 - 38,959,513 (+)	NCBI
Rnor_6.0	13	43,850,744 - 44,157,849 (+)	NCBI
Rnor_5.0	13	49,012,580 - 49,250,496 (+)	NCBI
RGSC_v3.4	13	39,900,089 - 40,135,002 (+)	RGD
Celera	13	39,217,802 - 39,336,884 (+)	RGD

Sequence:

show sequence

GACCCCGCTCCTGGCTGTGCCTGGGACCCCAGTTCCCAGGAGCACGGTTGCAGGAGAGTGACCC
CGACTGCTACTGATGGTGCTTCTGCTGCTCCTCTACTAGCAGGAGTGACTCCTACCCAGAAGTG
GACTTGGAGGAGGGTCCGTTAGACCATCAGAATGGAAGCCCGACAAGCAAGTCAGCTGACTCAG
GAACCAGAGTGAGGGCCACGCACTCTCCGCCCCAGCCTGCACCATGAACTTGCCTTCCCCTTCT
GCTTGTTGAGAGCCAAGGGAATGGTACATTACTAGAGAGAGATGGCTTTCTTTTCTCCCTGGAA
GTTGTCCTCTCAGAAGCTGGGCTTTTTCTTGGTGACTTTTGGCTTCATATGGGGGATGATGCTT
CTACACTTCACCATCCAGCAGCGAACTCAGCCTGAGAGCAGCTCCATGTTGCGGGAGCAAATCC
TTGACCTCAGCAAAAGGTACATTAAGGCACTGGCAGAAGAGAACAGGAACGTGGTGGATGGCCC
GTATGCCGGTGTCATGACAGCCTATGATCTGAAGAAAACGCTCGCCGTGCTGCTGGATAACATC
TTGCAGCGCATCGGCAAGCTGGAGTCCAAGGTGGACAATCTTGTCAACGGCACAGGAGCGAATT
CTACCAACTCCACCACGGCTGTCCCCAGCTTGGTGTCACTGGAGAAAATTAATGTGGCAGATAT
CATTAATGGAGTTCAAGAAAAATGTGTATTGCCTCCTATGGATGGCTACCCCCACTGCGAGGGG
AAAATCAAGTGGATGAAAGACATGTGGCGGTCAGACCCCTGCTACGCAGACTATGGAGTGGACG
GGACCTCCTGCTCCTTTTTTATTTACCTCAGTGAGGTTGAAAATTGGTGTCCTCGTTTACCTTG
GAGAGCAAAAAATCCCTATGAAGAAGCTGACCATAACTCATTGGCAGAAATCCGCACGGATTTT
AACATTCTCTACGGCATGATGAAGAAGCATGAGGAGTTCCGGTGGATGAGACTTCGGATCCGGC
GAATGGCTGATGCATGGATCCAAGCAATCAAGTCTCTGGCAGAGAAACAAAACCTAGAGAAGAG
GAAACGGAAGAAAATCCTTGTTCACCTGGGGCTCCTGACCAAGGAATCAGGCTTCAAGATTGCA
GAGACAGCATTCAGCGGTGGCCCTCTCGGCGAGCTCGTTCAGTGGAGTGACTTAATCACATCTC
TGTACCTGCTGGGCCATGACATCCGCATCTCAGCCTCGCTGGCTGAGCTCAAGGAGATTATGAA
GAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTTATTTAT
ATCGATATTGTGGGACTTGCTCAATTCAAGAAAACGCTAGGACCATCCTGGGTTCATTACCAGT
GCATGCTCCGGGTGCTGGACTCCTTTGGAACAGAACCTGAGTTCAATCACGCAAGTTACGCCCA
GTCGAAAGGCCACAAGACCCCCTGGGGAAAGTGGAATCTGAACCCGCAACAGTTTTACACCATG
TTCCCTCATACCCCAGACAACAGCTTTCTGGGCTTCGTGGTCGAGCAGCACCTGAACTCCAGCG
ACATCCACCACATTAACGAGATCAAAAGGCAGAACCAGTCCCTTGTGTATGGCAAAGTGGATAG
TTTCTGGAAGAATAAGAAGATCTACTTGGACATCATTCACACGTACATGGAAGTGCACGCCACT
GTTTACGGCTCCAGTACCAAGAACATCCCCAGTTACGTGAAAAACCATGGCATTCTCAGCGGCC
GTGACCTACAGTTTCTTCTCCGGGAAACCAAGCTTTTTGTTGGGCTTGGATTCCCTTATGAAGG
TCCAGCTCCCCTGGAAGCCATCGCGAATGGATGTGCTTTCCTGAACCCCAAGTTCAACCCTCCT
AAAAGCAGCAAAAACACAGACTTCTTCATTGGCAAGCCAACACTGAGAGAGCTCACATCCCAGC
ACCCGTACGCAGAAGTCTTCATCGGCCGGCCACACGTCTGGACCGTGGACCTCAATAACCGAGA
GGAAGTAGAAGACGCAGTAAAAGCCATCTTAAACCAGAAGATTGAGCCGTATATGCCATATGAG
TTCACATGTGAAGGCATGCTGCAGAGAATCAACGCTTTCATCGAGAAACAGGACTTCTGCCACG
GCCAAGTGATGTGGCCGCCCCTTAGCGCCCTGCAGGTGAAGCTGGCTGAGCCCGGGCAGTCCTG
CAAACAGGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCCGTCCTTCTTCCAGCACCTCAACAAG
GAAAAGGACCTGCTGAAGTATAAGGTAATCTGCCAAAGCTCAGAACTATACAAGGACATCCTGG
TGCCCTCCTTCTACCCCAAGAGCAAGCACTGTGTGTTCCAAGGGGATCTCCTGCTCTTCAGTTG
TGCCGGGGCCCACCCCACACACCAGCGGATCTGCCCCTGCCGGGACTTCATCAAGGGCCAAGTG
GCCCTCTGCAAAGACTGCCTATAGCATAGCCACCCTGGATTCATTCAGATGGGAAAGACGTGGC
TCCGCTGGGCAGGGCCGAGGGGCTGAAAGACAGTCAGGGACTCTGACCAGAGCCTGAAATCTT

hide sequence

RefSeq Acc Id:

XM_017598934 ⟹ XP_017454423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,228,328 - 41,516,462 (+)	NCBI
mRatBN7.2	13	38,675,776 - 38,959,410 (+)	NCBI
Rnor_6.0	13	43,850,750 - 44,157,860 (+)	NCBI

Sequence:

show sequence

GCTCCTGGCTGTGCCTGGGACCCCAGTTCCCAGGAGCACGGTTGCAGGAGAGTGACCCCGACTG
CTACTGATGGTGCTTCTGCTGCTCCTCTACTAGCAGGAGTGACTCCTACCCAGAAGTGGACTTG
GAGGAGGGTCCGTTAGACCATAATGGAAGCCCGACAAGCAAGTCAGCTGACTCAGGAACCAGAG
TGAGGGCCACGCACTCTCCGCCCCAGCCTGCACCATGAACTTGCCTTCCCCTTCTGCTTGTTGA
GAGCCAAGGGAATGGTACATTACTAGAGAGAGATGGCTTTCTTTTCTCCCTGGAAGTTGTCCTC
TCAGAAGCTGGGCTTTTTCTTGGTGACTTTTGGCTTCATATGGGGGATGATGCTTCTACACTTC
ACCATCCAGCAGCGAACTCAGCCTGAGAGCAGCTCCATGTTGCGGGAGCAAATCCTTGACCTCA
GCAAAAGGTACATTAAGGCACTGGCAGAAGAGAACAGGAACGTGGTGGATGGCCCGTATGCCGG
TGTCATGACAGCCTATGATCTGAAGAAAACGCTCGCCGTGCTGCTGGATAACATCTTGCAGCGC
ATCGGCAAGCTGGAGTCCAAGGTGGACAATCTTGTCAACGGCACAGGAGCGAATTCTACCAACT
CCACCACGGCTGTCCCCAGCTTGGTGTCACTGGAGAAAATTAATGTGGCAGATATCATTAATGG
AGTTCAAGAAAAATGTGTATTGCCTCCTATGGATGGCTACCCCCACTGCGAGGGGAAAATCAAG
TGGATGAAAGACATGTGGCGGTCAGACCCCTGCTACGCAGACTATGGAGTGGACGGGACCTCCT
GCTCCTTTTTTATTTACCTCAGTGAGGTTGAAAATTGGTGTCCTCGTTTACCTTGGAGAGCAAA
AAATCCCTATGAAGAAGCTGACCATAACTCATTGGCAGAAATCCGCACGGATTTTAACATTCTC
TACGGCATGATGAAGAAGCATGAGGAGTTCCGGTGGATGAGACTTCGGATCCGGCGAATGGCTG
ATGCATGGATCCAAGCAATCAAGTCTCTGGCAGAGAAACAAAACCTAGAGAAGAGGAAACGGAA
GAAAATCCTTGTTCACCTGGGGCTCCTGACCAAGGAATCAGGCTTCAAGATTGCAGAGACAGCA
TTCAGCGGCGGCCCTCTCGGCGAGCTCGTTCAGTGGAGTGACTTAATCACATCTCTGTACCTGC
TGGGCCATGACATCCGCATCTCAGCCTCGCTGGCTGAGCTCAAGGAGATTATGAAGAAGGTTGT
TGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTTATTTATATCGATATT
GTGGGACTTGCTCAATTCAAGAAAACGCTAGGACCATCCTGGGTTCATTACCAGTGCATGCTCC
GGGTGCTGGACTCCTTTGGAACAGAACCTGAGTTCAATCACGCAAGTTACGCCCAGTCGAAAGG
CCACAAGACCCCCTGGGGAAAGTGGAATCTGAACCCGCAACAGTTTTACACCATGTTCCCTCAT
ACCCCAGACAACAGCTTTCTGGGCTTCGTGGTCGAGCAGCACCTGAACTCCAGCGACATCCACC
ACATTAACGAGATCAAAAGGCAGAACCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCTGGAA
GAATAAGAAGATCTACTTGGACATCATTCACACGTACATGGAAGTGCACGCCACTGTTTACGGC
TCCAGTACCAAGAACATCCCCAGTTACGTGAAAAACCATGGCATTCTCAGCGGCCGTGACCTAC
AGTTTCTTCTCCGGGAAACCAAGCTTTTTGTTGGGCTTGGATTCCCTTATGAAGGTCCAGCTCC
CCTGGAAGCCATCGCGAATGGATGTGCTTTCCTGAACCCCAAGTTCAACCCTCCTAAAAGCAGC
AAAAACACAGACTTCTTCATTGGCAAGCCAACACTGAGAGAGCTCACATCCCAGCACCCGTACG
CAGAAGTCTTCATCGGCCGGCCACACGTCTGGACCGTGGACCTCAATAACCGAGAGGAAGTAGA
AGACGCAGTAAAAGCCATCTTAAACCAGAAGATTGAGCCGTATATGCCATATGAGTTCACATGT
GAAGGCATGCTGCAGAGAATCAACGCTTTCATCGAGAAACAGGACTTCTGCCACGGCCAAGTGA
TGTGGCCGCCCCTTAGCGCCCTGCAGGTGAAGCTGGCTGAGCCCGGGCAGTCCTGCAAACAGGT
GTGCCAGGAGAGCCAGCTCATCTGCGAGCCGTCCTTCTTCCAGCACCTCAACAAGGAAAAGGAC
CTGCTGAAGTATAAGGTAATCTGCCAAAGCTCAGAACTATACAAGGACATCCTGGTGCCCTCCT
TCTACCCCAAGAGCAAGCACTGTGTGTTCCAAGGGGATCTCCTGCTCTTCAGTTGTGCCGGGGC
CCACCCCACACACCAGCGGATCTGCCCCTGCCGGGACTTCATCAAGGGCCAAGTGGCCCTCTGC
AAAGACTGCCTATAGCATAGCCACCCTGGATTCATTCAGATGGGAAAGACGTGGCTCCGCTGGG
CAGGGCCGAGGGGCTGAAAGACAGTCAGGGACTCTGACCAGAGCCTGAAATCTTTGGTCCACGG
C

hide sequence

RefSeq Acc Id:

XM_039091088 ⟹ XP_038947016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,228,327 - 41,477,021 (+)	NCBI
mRatBN7.2	13	38,675,776 - 38,924,527 (+)	NCBI

RefSeq Acc Id:

XM_063272594 ⟹ XP_063128664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,228,828 - 41,516,462 (+)	NCBI

RefSeq Acc Id:

XM_063272595 ⟹ XP_063128665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,251,942 - 41,516,462 (+)	NCBI

RefSeq Acc Id:

XM_063272596 ⟹ XP_063128666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,228,829 - 41,516,462 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_075583	(Get FASTA)	NCBI Sequence Viewer
	XP_017454423	(Get FASTA)	NCBI Sequence Viewer
	XP_038947016	(Get FASTA)	NCBI Sequence Viewer
	XP_063128664	(Get FASTA)	NCBI Sequence Viewer
	XP_063128665	(Get FASTA)	NCBI Sequence Viewer
	XP_063128666	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41665	(Get FASTA)	NCBI Sequence Viewer
	BAF94223	(Get FASTA)	NCBI Sequence Viewer
	BAF94243	(Get FASTA)	NCBI Sequence Viewer
	EDM09894	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004995
	ENSRNOP00000004995.2
	ENSRNOP00000076422
GenBank Protein	Q08834	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_075583 ⟸ NM_023095

- UniProtKB:

Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFFSPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEE
NRNVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVNGTGANSTNSTTAVPSLVSL
EKINVADIINGVQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGTSCSFFIYLSEVE
NWCPRLPWRAKNPYEEADHNSLAEIRTDFNILYGMMKKHEEFRWMRLRIRRMADAWIQAIKSLA
EKQNLEKRKRKKILVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASL
AELKEIMKKVVGNRSGCPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPE
FNHASYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQS
LVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFV
GLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVW
TVDLNNREEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVMWPPLSALQVK
LAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKYKVICQSSELYKDILVPSFYPKSKHCVFQ
GDLLLFSCAGAHPTHQRICPCRDFIKGQVALCKDCL

hide sequence

RefSeq Acc Id:	XP_017454423 ⟸ XM_017598934
- Peptide Label:	isoform X1
- UniProtKB:	Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFFSPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEE NRNVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVNGTGANSTNSTTAVPSLVSL EKINVADIINGVQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGTSCSFFIYLSEVE NWCPRLPWRAKNPYEEADHNSLAEIRTDFNILYGMMKKHEEFRWMRLRIRRMADAWIQAIKSLA EKQNLEKRKRKKILVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASL AELKEIMKKVVGNRSGCPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPE FNHASYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQS LVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFV GLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVW TVDLNNREEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVMWPPLSALQVK LAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKYKVICQSSELYKDILVPSFYPKSKHCVFQ GDLLLFSCAGAHPTHQRICPCRDFIKGQVALCKDCL hide sequence

Ensembl Acc Id:

ENSRNOP00000004995 ⟸ ENSRNOT00000004995

RefSeq Acc Id:	XP_038947016 ⟸ XM_039091088
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000067101 ⟸ ENSRNOT00000073921

Ensembl Acc Id:

ENSRNOP00000076422 ⟸ ENSRNOT00000100469

RefSeq Acc Id:	XP_063128664 ⟸ XM_063272594
- Peptide Label:	isoform X1
- UniProtKB:	Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128666 ⟸ XM_063272596
- Peptide Label:	isoform X1
- UniProtKB:	Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128665 ⟸ XM_063272595
- Peptide Label:	isoform X1
- UniProtKB:	Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL)

Protein Domains

Glycosyltransferase family 18 catalytic MGT5A-like N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q08834-F1-model_v2	AlphaFold	Q08834	1-740	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620100	AgrOrtholog
BioCyc Gene	G2FUF-18442	BioCyc
BioCyc Pathway	PWY-7426 [complex N-linked glycan biosynthesis (vertebrates)]	BioCyc
BioCyc Pathway Image	PWY-7426	BioCyc
Ensembl Genes	ENSRNOG00000003614	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000049403	Ensembl
Ensembl Transcript	ENSRNOT00000004995	ENTREZGENE
	ENSRNOT00000004995.5	UniProtKB/Swiss-Prot
	ENSRNOT00000100469	ENTREZGENE
InterPro	DUF4525	UniProtKB/Swiss-Prot
	GlyclTrfase_18	UniProtKB/Swiss-Prot
	MGAT5_Glycosyltransferase	UniProtKB/Swiss-Prot
KEGG Report	rno:65271	UniProtKB/Swiss-Prot
NCBI Gene	65271	ENTREZGENE
PANTHER	ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE A	UniProtKB/Swiss-Prot
	ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE	UniProtKB/Swiss-Prot
Pfam	DUF4525	UniProtKB/Swiss-Prot
	Glyco_transf_18	UniProtKB/Swiss-Prot
PhenoGen	Mgat5	PhenoGen
RatGTEx	ENSRNOG00000003614	RatGTEx
	ENSRNOG00000049403	RatGTEx
UniProt	A0A8I5Y5S9_RAT	UniProtKB/TrEMBL
	A6IBV2_RAT	UniProtKB/TrEMBL
	A9CMA3	ENTREZGENE, UniProtKB/TrEMBL
	A9CMD1	ENTREZGENE, UniProtKB/TrEMBL
	MGT5A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Mgat5	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	LOC100909582	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like	Data merged from RGD:6503116	737654	PROVISIONAL
2018-07-05	Mgat5	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	Mgat5	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-17	Mgat5	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	LOC679424	similar to Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase	Data merged from RGD:1588339	737654	PROVISIONAL
2012-07-05	LOC100909582	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-08-29	Mgat5	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	Mgat5	mannoside acetylglucosaminyltransferase 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC679424	similar to Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-11-17	Mgat5	mannoside acetylglucosaminyltransferase 5		Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase	Name updated	1299863	APPROVED
2005-01-20	Mgat5	Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase		N-acetylglucosaminyltransferase V	Name updated	1299863	APPROVED
2002-08-07	Mgat5	N-acetylglucosaminyltransferase V			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	740 amino acids	729036
gene_protein	type II membrane protein	729036

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

Mammalian Phenotype