Gzmc (granzyme C) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gzmc (granzyme C) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Gzmc
Name: granzyme C
RGD ID: 620019
Description: Orthologous to human GZMB (granzyme B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498520; LOC691695; LOC691701; natural killer cell protease 4; RGD1563645; Rnpk-4; Rnpk4; similar to granzyme C
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,437,312 - 34,440,006 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1534,437,317 - 34,440,048 (-)EnsemblGRCr8
mRatBN7.21530,321,653 - 30,324,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,173,603 - 30,346,814 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1530,129,076 - 30,139,105 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1530,062,897 - 30,072,172 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1532,313,045 - 32,315,739 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,463,690 - 33,466,384 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01531,721,769 - 31,724,463 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01535,392,158 - 35,394,787 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1535,392,162 - 35,394,792 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1536,448,971 - 36,451,720 (-)Ensemblrn6Rnor6.0
Rnor_5.01539,275,246 - 39,277,875 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41535,173,371 - 35,176,000 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1529,858,096 - 29,860,821 (-)NCBICelera
RGSC_v3.11535,189,071 - 35,191,700 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. P-4 and RNKP-7, new granzyme-like serine proteases expressed in activated rat lymphocytes. Ewoldt GR, etal., J Immunol 1997 May 15;158(10):4574-83.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gzmc
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3
Count of miRNA genes:3
Interacting mature miRNAs:3
Transcripts:ENSRNOT00000028058
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
RH131619  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15p12UniSTS
Gzmc  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81534,437,499 - 34,438,192 (+)Marker Load Pipeline
mRatBN7.21530,321,840 - 30,322,533 (+)MAPPERmRatBN7.2
Rnor_6.01535,392,346 - 35,393,038NCBIRnor6.0
Rnor_6.01536,449,158 - 36,449,850NCBIRnor6.0
Rnor_5.01540,303,169 - 40,303,861UniSTSRnor5.0
Rnor_5.01539,275,434 - 39,276,126UniSTSRnor5.0
Celera1530,043,098 - 30,043,790UniSTS
Cytogenetic Map15p12UniSTS
AI323531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21530,321,705 - 30,321,843 (+)MAPPERmRatBN7.2
Rnor_6.01535,392,211 - 35,392,348NCBIRnor6.0
Rnor_6.01536,449,023 - 36,449,160NCBIRnor6.0
Rnor_5.01540,303,034 - 40,303,171UniSTSRnor5.0
Rnor_5.01539,275,299 - 39,275,436UniSTSRnor5.0
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
12 1 11 29 30 26 14 70 14 6 149 96 5 13 27 34 12

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_134332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT878764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000028058   ⟹   ENSRNOP00000028057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,129,076 - 30,139,105 (-)Ensembl
Rnor_6.0 Ensembl1535,392,162 - 35,394,792 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000041430   ⟹   ENSRNOP00000040429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,218,074 - 30,346,814 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000045209   ⟹   ENSRNOP00000043259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,218,653 - 30,346,814 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000059660   ⟹   ENSRNOP00000056412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,173,609 - 30,346,806 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071692   ⟹   ENSRNOP00000064418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,218,653 - 30,221,297 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075752   ⟹   ENSRNOP00000064656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,321,658 - 30,324,389 (-)Ensembl
Rnor_6.0 Ensembl1536,448,971 - 36,451,720 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083961   ⟹   ENSRNOP00000075556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1534,459,007 - 34,462,469 (-)Ensembl
mRatBN7.2 Ensembl1530,343,362 - 30,346,772 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105501   ⟹   ENSRNOP00000092620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,062,897 - 30,072,172 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110630   ⟹   ENSRNOP00000082885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,173,603 - 30,176,511 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118970   ⟹   ENSRNOP00000092778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,218,653 - 30,221,565 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120987   ⟹   ENSRNOP00000098548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1534,437,317 - 34,440,048 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151406   ⟹   ENSRNOP00000099812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1534,459,017 - 34,462,427 (-)Ensembl
RefSeq Acc Id: NM_134332   ⟹   NP_599159
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,437,312 - 34,440,006 (-)NCBI
mRatBN7.21530,321,653 - 30,324,347 (-)NCBI
Rnor_6.01535,392,158 - 35,394,787 (-)NCBI
Rnor_5.01539,275,246 - 39,277,875 (-)NCBI
RGSC_v3.41535,173,371 - 35,176,000 (-)RGD
Celera1530,042,910 - 30,045,539 (-)RGD
Sequence:
RefSeq Acc Id: NP_599159   ⟸   NM_134332
- Peptide Label: precursor
- UniProtKB: Q63636 (UniProtKB/TrEMBL),   M0R5I8 (UniProtKB/TrEMBL),   A6KH93 (UniProtKB/TrEMBL),   A0A8I6GJW0 (UniProtKB/TrEMBL),   A0A0S3CWG6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028057   ⟸   ENSRNOT00000028058
Ensembl Acc Id: ENSRNOP00000064656   ⟸   ENSRNOT00000075752
Ensembl Acc Id: ENSRNOP00000092620   ⟸   ENSRNOT00000105501
Ensembl Acc Id: ENSRNOP00000075556   ⟸   ENSRNOT00000083961
Ensembl Acc Id: ENSRNOP00000082885   ⟸   ENSRNOT00000110630
Ensembl Acc Id: ENSRNOP00000040429   ⟸   ENSRNOT00000041430
Ensembl Acc Id: ENSRNOP00000064418   ⟸   ENSRNOT00000071692
Ensembl Acc Id: ENSRNOP00000056412   ⟸   ENSRNOT00000059660
Ensembl Acc Id: ENSRNOP00000092778   ⟸   ENSRNOT00000118970
Ensembl Acc Id: ENSRNOP00000043259   ⟸   ENSRNOT00000045209
Ensembl Acc Id: ENSRNOP00000098548   ⟸   ENSRNOT00000120987
Ensembl Acc Id: ENSRNOP00000099812   ⟸   ENSRNOT00000151406
Protein Domains
Peptidase S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63636-F1-model_v2 AlphaFold Q63636 1-248 view protein structure
AF-M0R5I8-F1-model_v2 AlphaFold M0R5I8 1-283 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620019 AgrOrtholog
BioCyc Gene G2FUF-13638 BioCyc
Ensembl Genes ENSRNOG00000030018 Ensembl
  ENSRNOG00000045641 Ensembl
  ENSRNOG00000049976 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000071303 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000072988 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028058.9 UniProtKB/TrEMBL
  ENSRNOT00000083961.2 UniProtKB/TrEMBL
  ENSRNOT00000120987 ENTREZGENE
  ENSRNOT00000120987.2 UniProtKB/TrEMBL
  ENSRNOT00000151406.1 UniProtKB/TrEMBL
  ENSRNOT00000163348.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Peptidase_S1/S6_AS UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1_S6 UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Ser/Cys_Pept_Trypsin-like UniProtKB/TrEMBL
KEGG Report rno:171290 UniProtKB/TrEMBL
NCBI Gene 171290 ENTREZGENE
PANTHER GRANZYME B UniProtKB/TrEMBL
  GRANZYME C UniProtKB/TrEMBL
  KALLIKREIN-RELATED UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PhenoGen Gzmc PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030018 RatGTEx
  ENSRNOG00000045641 RatGTEx
  ENSRNOG00000049976 RatGTEx
  ENSRNOG00000071303 RatGTEx
  ENSRNOG00000072988 RatGTEx
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Pept_Ser_Cys UniProtKB/TrEMBL
UniProt A0A0S3CWG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJW0 ENTREZGENE
  A0ABK0L2J1_RAT UniProtKB/TrEMBL
  A0ABK0L7S4_RAT UniProtKB/TrEMBL
  A0ABK0LHT5_RAT UniProtKB/TrEMBL
  A1L119_RAT UniProtKB/TrEMBL
  A6KH93 ENTREZGENE
  M0R5I8 ENTREZGENE
  Q63636 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6KH93 UniProtKB/TrEMBL
  M0R5I8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Gzmc  granzyme C  LOC691695  similar to granzyme C  Data merged from RGD:1597199 737654 PROVISIONAL
2015-07-29 Gzmc  granzyme C  RGD1563645  similar to granzyme C  Data merged from RGD:1563645 737654 PROVISIONAL
2011-10-27 RGD1563645  similar to granzyme C  LOC691701  similar to granzyme C  Data merged from RGD:1596012 737654 APPROVED
2008-04-30 RGD1563645  similar to granzyme C   RGD1563645_predicted  similar to granzyme C (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC691701  similar to granzyme C      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC691695  similar to granzyme C      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563645_predicted  similar to granzyme C (predicted)  LOC498520  similar to granzyme C  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498520  similar to granzyme C      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Gzmc  granzyme C      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Gzmc  granzyme C      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 248 amino acids 632834