Ppp1r12a (protein phosphatase 1, regulatory subunit 12A) - Rat Genome Database

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Gene: Ppp1r12a (protein phosphatase 1, regulatory subunit 12A) Rattus norvegicus
Analyze
Symbol: Ppp1r12a
Name: protein phosphatase 1, regulatory subunit 12A
RGD ID: 620013
Description: Enables phosphoprotein phosphatase activity. Predicted to be involved in several processes, including centrosome cycle; positive regulation of transcription by RNA polymerase II; and protein dephosphorylation. Predicted to act upstream of or within cellular response to xenobiotic stimulus and regulation of nucleocytoplasmic transport. Predicted to be located in centrosome; contractile muscle fiber; and kinetochore. Predicted to be part of PTW/PP1 phosphatase complex. Predicted to be active in A band and Z disc. Orthologous to human PPP1R12A (protein phosphatase 1 regulatory subunit 12A); PARTICIPATES IN long term potentiation; INTERACTS WITH (R)-noradrenaline; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 1-octadec-9-enoylglycero-3-phosphate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: M110; MBSP; myosin phosphatase, target subunit 1; myosin phosphatase-targeting subunit 1; Mypt1; PP-1M; protein phosphatase 1 regulatory subunit 12A; protein phosphatase 1, regulatory (inhibitor) subunit 12A; protein phosphatase myosin-binding subunit; protein phosphatase subunit 1M; serine/threonine protein phosphatase PP1 smooth muscle regulatory subunit M110; smooth muscle myosin phosphatase myosin-binding subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8745,368,922 - 45,480,158 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl745,369,315 - 45,480,157 (+)EnsemblGRCr8
mRatBN7.2743,482,808 - 43,593,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl743,482,803 - 43,593,425 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx745,390,762 - 45,499,381 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0747,593,881 - 47,702,502 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0747,371,635 - 47,480,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0751,404,971 - 51,515,382 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl751,404,919 - 51,515,373 (-)Ensemblrn6Rnor6.0
Rnor_5.0751,417,546 - 51,527,960 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4746,876,552 - 46,986,022 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera740,349,341 - 40,458,007 (+)NCBICelera
RGSC_v3.1746,896,822 - 47,006,293 (+)NCBI
Cytogenetic Map7q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-noradrenaline  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-octadec-9-enoylglycero-3-phosphate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-nitrotoluene  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
aldrithiol  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrasentan  (EXP)
benzatropine  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
Brodifacoum  (EXP)
bromochloroacetic acid  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (ISO)
capsazepine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
cisplatin  (ISO)
cocaine  (EXP)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
D-glucose  (EXP)
decabromodiphenyl ether  (ISO)
dibenziodolium  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (EXP,ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor  (EXP)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
fasudil  (EXP)
fluvastatin  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geranylgeraniol  (EXP)
glucose  (EXP)
glycodeoxycholic acid  (EXP)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
guanosine 5'-[gamma-thio]triphosphate  (EXP)
hexadecanoic acid  (ISO)
HTH-01-015  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hydroxyurea  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
notoginsenoside R1  (EXP)
oxaliplatin  (EXP)
p-anisidine  (ISO)
paclitaxel  (ISO)
paraquat  (EXP)
permethrin  (EXP)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
phorbol 12,13-dibutanoate  (EXP)
potassium chloride  (EXP)
potassium chromate  (ISO)
propiconazole  (ISO)
prostaglandin D2  (ISO)
quercetin  (ISO)
razoxane  (EXP)
resveratrol  (ISO)
simvastatin  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (EXP)
sodium fluoride  (ISO)
streptozocin  (EXP)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trans-piceid  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
Y-27632  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
A band  (IBA,IEA,ISO,ISS)
actin cytoskeleton  (IEA,ISO)
centrosome  (IEA,ISO,ISS)
contractile muscle fiber  (IEA,ISO)
cytoplasm  (IBA,IEA)
cytosol  (IEA,ISO,TAS)
kinetochore  (IEA,ISO,ISS)
PTW/PP1 phosphatase complex  (IEA,ISO,ISS)
stress fiber  (IEA)
Z disc  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Molecular cloning of cDNA encoding the 110 kDa and 21 kDa regulatory subunits of smooth muscle protein phosphatase 1M. Chen YH, etal., FEBS Lett 1994 Dec 12;356(1):51-5.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Molecular cloning and functional expression of a recombinant 72.5 kDa fragment of the 110 kDa regulatory subunit of smooth muscle protein phosphatase 1M. Haystead CM, etal., FEBS Lett 1995 Dec 18;377(2):123-7.
5. Tumorigenic transformation by CPI-17 through inhibition of a merlin phosphatase. Jin H, etal., Nature. 2006 Aug 3;442(7102):576-9.
6. p116Rip decreases myosin II phosphorylation by activating myosin light chain phosphatase and by inactivating RhoA. Koga Y and Ikebe M, J Biol Chem. 2005 Feb 11;280(6):4983-91. Epub 2004 Nov 14.
7. Prostate-apoptosis response-4 phosphorylation in vascular smooth muscle. MacDonald JA, etal., Arch Biochem Biophys. 2013 Jul 1;535(1):84-90. doi: 10.1016/j.abb.2012.11.009. Epub 2012 Dec 3.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Novel ZIP kinase isoform lacks leucine zipper. Takamoto N, etal., Arch Biochem Biophys. 2006 Dec 15;456(2):194-203. Epub 2006 Oct 16.
12. Phosphorylation of CPI17 and myosin binding subunit of type 1 protein phosphatase by p21-activated kinase. Takizawa N, etal., Biochem Biophys Res Commun 2002 Oct 4;297(4):773-8.
13. Par-4: a new activator of myosin phosphatase. Vetterkind S, etal., Mol Biol Cell. 2010 Apr 1;21(7):1214-24. doi: 10.1091/mbc.E09-08-0711. Epub 2010 Feb 3.
Additional References at PubMed
PMID:8662509   PMID:10579722   PMID:11067852   PMID:12595284   PMID:14704233   PMID:15321927   PMID:15908465   PMID:16106448   PMID:16297917   PMID:16396499   PMID:16641100   PMID:16815432  
PMID:16870832   PMID:17293476   PMID:17369396   PMID:17382904   PMID:17880363   PMID:18094049   PMID:18094148   PMID:18477460   PMID:18524939   PMID:19245366   PMID:19359365   PMID:20354225  
PMID:20634291   PMID:21070574   PMID:21423176   PMID:22004286   PMID:22235829   PMID:22322972   PMID:23172397   PMID:24972320   PMID:25502873   PMID:25816133   PMID:26004531   PMID:26163515  
PMID:26610064   PMID:26864694   PMID:30962047   PMID:35352799  


Genomics

Comparative Map Data
Ppp1r12a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8745,368,922 - 45,480,158 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl745,369,315 - 45,480,157 (+)EnsemblGRCr8
mRatBN7.2743,482,808 - 43,593,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl743,482,803 - 43,593,425 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx745,390,762 - 45,499,381 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0747,593,881 - 47,702,502 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0747,371,635 - 47,480,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0751,404,971 - 51,515,382 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl751,404,919 - 51,515,373 (-)Ensemblrn6Rnor6.0
Rnor_5.0751,417,546 - 51,527,960 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4746,876,552 - 46,986,022 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera740,349,341 - 40,458,007 (+)NCBICelera
RGSC_v3.1746,896,822 - 47,006,293 (+)NCBI
Cytogenetic Map7q21NCBI
PPP1R12A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381279,773,563 - 79,935,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1279,773,563 - 79,935,460 (-)Ensemblhg38GRCh38
GRCh371280,167,343 - 80,329,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361278,692,317 - 78,852,842 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341278,670,653 - 78,831,179NCBI
Celera1279,833,868 - 79,995,723 (-)NCBICelera
Cytogenetic Map12q21.2-q21.31NCBI
HuRef1277,223,683 - 77,385,520 (-)NCBIHuRef
CHM1_11280,133,789 - 80,295,575 (-)NCBICHM1_1
T2T-CHM13v2.01279,752,233 - 79,914,115 (-)NCBIT2T-CHM13v2.0
Ppp1r12a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,997,913 - 108,115,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10107,998,054 - 108,120,336 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810108,162,092 - 108,279,985 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10108,162,193 - 108,284,475 (+)Ensemblmm10GRCm38
MGSCv3710107,599,456 - 107,714,631 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610107,566,219 - 107,688,585 (+)NCBIMGSCv36mm8
Celera10110,096,336 - 110,211,438 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1056.33NCBI
Ppp1r12a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540518,596,541 - 18,727,345 (-)Ensembl
ChiLan1.0NW_00495540518,594,191 - 18,727,345 (-)NCBIChiLan1.0ChiLan1.0
PPP1R12A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21087,826,297 - 87,990,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11287,822,433 - 87,986,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01277,306,155 - 77,459,455 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11280,153,348 - 80,316,131 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1280,155,702 - 80,314,601 (-)EnsemblpanPan2panpan1.1
PPP1R12A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11522,272,291 - 22,413,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1522,274,259 - 22,414,359 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1522,698,781 - 22,837,753 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01522,634,434 - 22,773,680 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1522,634,483 - 22,773,936 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11522,210,562 - 22,351,199 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01522,271,520 - 22,410,758 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01522,511,839 - 22,651,103 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp1r12a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494537,963,878 - 38,100,776 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936698817,943 - 948,368 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936698811,399 - 948,631 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R12A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5101,490,341 - 101,639,429 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.15101,490,282 - 101,639,456 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25106,491,071 - 106,610,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R12A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11175,300,278 - 75,461,498 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1175,319,962 - 75,461,438 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037169,985,567 - 170,152,231 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r12a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475018,363,913 - 18,501,243 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475018,363,618 - 18,498,630 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp1r12a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11186,387,602 - 186,498,148 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppp1r12a
624 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:367
Count of miRNA genes:123
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000006773, ENSRNOT00000041473, ENSRNOT00000050037
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74299622658678836Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH131122  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2743,481,234 - 43,482,285 (-)MAPPERmRatBN7.2
Rnor_6.0751,515,905 - 51,516,955NCBIRnor6.0
Rnor_5.0751,528,483 - 51,529,533UniSTSRnor5.0
RGSC_v3.4746,874,818 - 46,875,868UniSTSRGSC3.4
Celera740,347,607 - 40,348,657UniSTS
RH 3.4 Map7348.4UniSTS
Cytogenetic Map7q21UniSTS
AU047441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2743,498,527 - 43,498,738 (-)MAPPERmRatBN7.2
Rnor_6.0751,499,452 - 51,499,662NCBIRnor6.0
Rnor_5.0751,512,030 - 51,512,240UniSTSRnor5.0
RGSC_v3.4746,892,111 - 46,892,321UniSTSRGSC3.4
Celera740,364,903 - 40,365,113UniSTS
Cytogenetic Map7q21UniSTS
RH137913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2743,487,904 - 43,488,025 (-)MAPPERmRatBN7.2
Rnor_6.0751,510,165 - 51,510,285NCBIRnor6.0
Rnor_5.0751,522,743 - 51,522,863UniSTSRnor5.0
RGSC_v3.4746,881,488 - 46,881,608UniSTSRGSC3.4
Celera740,354,278 - 40,354,398UniSTS
RH 3.4 Map7352.9UniSTS
Cytogenetic Map7q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF110176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S74907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006773   ⟹   ENSRNOP00000006773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,474,862 (+)Ensembl
mRatBN7.2 Ensembl743,482,803 - 43,591,634 (+)Ensembl
Rnor_6.0 Ensembl751,407,309 - 51,515,131 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000041473   ⟹   ENSRNOP00000045260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,319 - 45,479,902 (+)Ensembl
mRatBN7.2 Ensembl743,483,020 - 43,593,417 (+)Ensembl
Rnor_6.0 Ensembl751,407,309 - 51,515,131 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000050037   ⟹   ENSRNOP00000040934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
mRatBN7.2 Ensembl743,483,007 - 43,591,632 (+)Ensembl
Rnor_6.0 Ensembl751,407,029 - 51,515,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080285   ⟹   ENSRNOP00000069900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
mRatBN7.2 Ensembl743,483,020 - 43,593,417 (+)Ensembl
Rnor_6.0 Ensembl751,404,919 - 51,515,373 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108069   ⟹   ENSRNOP00000078058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
mRatBN7.2 Ensembl743,483,020 - 43,593,417 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112147   ⟹   ENSRNOP00000080607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
mRatBN7.2 Ensembl743,482,804 - 43,593,425 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115471   ⟹   ENSRNOP00000096566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
mRatBN7.2 Ensembl743,483,020 - 43,593,417 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152362   ⟹   ENSRNOP00000104388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl745,369,315 - 45,480,157 (+)Ensembl
RefSeq Acc Id: NM_053890   ⟹   NP_446342
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,444 - 45,478,103 (+)NCBI
mRatBN7.2743,482,969 - 43,591,631 (+)NCBI
Rnor_6.0751,407,029 - 51,515,221 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
RGSC_v3.4746,876,552 - 46,986,022 (+)RGD
Celera740,349,341 - 40,458,007 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241308   ⟹   XP_006241370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
Rnor_6.0751,404,973 - 51,515,382 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241311   ⟹   XP_006241373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,368,922 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
Rnor_6.0751,404,973 - 51,515,382 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241312   ⟹   XP_006241374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
Rnor_6.0751,404,973 - 51,515,382 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241313   ⟹   XP_006241375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
Rnor_6.0751,404,973 - 51,515,382 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241315   ⟹   XP_006241377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,368,922 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
Rnor_6.0751,404,973 - 51,515,382 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241316   ⟹   XP_006241378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,426,839 - 45,480,158 (+)NCBI
mRatBN7.2743,541,169 - 43,593,689 (+)NCBI
Rnor_6.0751,404,971 - 51,456,837 (-)NCBI
Rnor_5.0751,417,546 - 51,527,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078253   ⟹   XP_038934181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
RefSeq Acc Id: XM_039078254   ⟹   XP_038934182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
RefSeq Acc Id: XM_039078255   ⟹   XP_038934183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,369,265 - 45,480,158 (+)NCBI
mRatBN7.2743,482,808 - 43,593,687 (+)NCBI
RefSeq Acc Id: XM_063262871   ⟹   XP_063118941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,368,922 - 45,480,158 (+)NCBI
RefSeq Acc Id: XM_063262872   ⟹   XP_063118942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,368,922 - 45,480,158 (+)NCBI
RefSeq Acc Id: XM_063262873   ⟹   XP_063118943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8745,368,922 - 45,480,158 (+)NCBI
RefSeq Acc Id: NP_446342   ⟸   NM_053890
- UniProtKB: Q9WU33 (UniProtKB/Swiss-Prot),   Q62937 (UniProtKB/Swiss-Prot),   Q10728 (UniProtKB/Swiss-Prot),   A6IGD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241378   ⟸   XM_006241316
- Peptide Label: isoform X12
- UniProtKB: A0A8I6ATJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241377   ⟸   XM_006241315
- Peptide Label: isoform X8
- UniProtKB: A6IGD7 (UniProtKB/TrEMBL),   D4ACS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241373   ⟸   XM_006241311
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JWJ0 (UniProtKB/TrEMBL),   A6IGD6 (UniProtKB/TrEMBL),   A0A8I6ATJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241374   ⟸   XM_006241312
- Peptide Label: isoform X4
- UniProtKB: Q9WU33 (UniProtKB/Swiss-Prot),   Q62937 (UniProtKB/Swiss-Prot),   Q10728 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006241375   ⟸   XM_006241313
- Peptide Label: isoform X5
- UniProtKB: D4ACS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241370   ⟸   XM_006241308
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y8E5 (UniProtKB/TrEMBL),   A0A8I6ATJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069900   ⟸   ENSRNOT00000080285
Ensembl Acc Id: ENSRNOP00000006773   ⟸   ENSRNOT00000006773
Ensembl Acc Id: ENSRNOP00000045260   ⟸   ENSRNOT00000041473
Ensembl Acc Id: ENSRNOP00000040934   ⟸   ENSRNOT00000050037
RefSeq Acc Id: XP_038934181   ⟸   XM_039078253
- Peptide Label: isoform X2
- UniProtKB: Q9WU33 (UniProtKB/Swiss-Prot),   Q62937 (UniProtKB/Swiss-Prot),   Q10728 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038934182   ⟸   XM_039078254
- Peptide Label: isoform X7
- UniProtKB: D4ACS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934183   ⟸   XM_039078255
- Peptide Label: isoform X9
- UniProtKB: D4ACS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078058   ⟸   ENSRNOT00000108069
Ensembl Acc Id: ENSRNOP00000096566   ⟸   ENSRNOT00000115471
Ensembl Acc Id: ENSRNOP00000080607   ⟸   ENSRNOT00000112147
RefSeq Acc Id: XP_063118941   ⟸   XM_063262871
- Peptide Label: isoform X6
- UniProtKB: Q9WU33 (UniProtKB/Swiss-Prot),   Q62937 (UniProtKB/Swiss-Prot),   Q10728 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063118942   ⟸   XM_063262872
- Peptide Label: isoform X10
- UniProtKB: D4ACS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118943   ⟸   XM_063262873
- Peptide Label: isoform X11
- UniProtKB: D4A1S6 (UniProtKB/TrEMBL),   D4ACS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104388   ⟸   ENSRNOT00000152362
Protein Domains
cGMP-dependent protein kinase interacting

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q10728-F1-model_v2 AlphaFold Q10728 1-1032 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695183
Promoter ID:EPDNEW_R5708
Type:initiation region
Name:Ppp1r12a_1
Description:protein phosphatase 1, regulatory subunit 12A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0751,515,299 - 51,515,359EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620013 AgrOrtholog
BioCyc Gene G2FUF-34167 BioCyc
Ensembl Genes ENSRNOG00000004925 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000041473 ENTREZGENE
  ENSRNOT00000041473.6 UniProtKB/Swiss-Prot
  ENSRNOT00000050037 ENTREZGENE
  ENSRNOT00000080285 ENTREZGENE
  ENSRNOT00000108069 ENTREZGENE
  ENSRNOT00000152362 ENTREZGENE
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot
  6.10.140.390 UniProtKB/Swiss-Prot
  6.10.250.1820 UniProtKB/Swiss-Prot
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  MYPT1/MYPT2/Mbs85 UniProtKB/Swiss-Prot
  PP1_Regulatory_Subunit UniProtKB/Swiss-Prot
  PRKG1_interact UniProtKB/Swiss-Prot
KEGG Report rno:116670 UniProtKB/Swiss-Prot
NCBI Gene 116670 ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 UniProtKB/Swiss-Prot
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12A UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  PRKG1_interact UniProtKB/Swiss-Prot
PhenoGen Ppp1r12a PhenoGen
PIRSF PP1_12ABC_vert UniProtKB/Swiss-Prot
PRINTS ANKYRIN UniProtKB/Swiss-Prot
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004925 RatGTEx
SMART ANK UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
UniProt A0A0G2JWJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y8E5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQF4_RAT UniProtKB/TrEMBL
  A0A8I6ATJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LSN2_RAT UniProtKB/TrEMBL
  A6IGD5_RAT UniProtKB/TrEMBL
  A6IGD6 ENTREZGENE, UniProtKB/TrEMBL
  A6IGD7 ENTREZGENE, UniProtKB/TrEMBL
  A6IGD8 ENTREZGENE, UniProtKB/TrEMBL
  A6IGD9_RAT UniProtKB/TrEMBL
  D3ZR53_RAT UniProtKB/TrEMBL
  D4A1S6 ENTREZGENE, UniProtKB/TrEMBL
  D4ACS0 ENTREZGENE, UniProtKB/TrEMBL
  MYPT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q62937 ENTREZGENE
  Q9WU33 ENTREZGENE
UniProt Secondary Q62937 UniProtKB/Swiss-Prot
  Q9WU33 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-10-18 Ppp1r12a  protein phosphatase 1, regulatory subunit 12A  Ppp1r12a  protein phosphatase 1, regulatory (inhibitor) subunit 12A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Ppp1r12a  protein phosphatase 1, regulatory (inhibitor) subunit 12A  Mypt1  myosin phosphatase, target subunit 1  Symbol and Name updated 1299863 APPROVED
2002-08-07 Mypt1  myosin phosphatase, target subunit 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains seven ankyrin repeats 633338