Setd4 (SET domain containing 4) - Rat Genome Database

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Gene: Setd4 (SET domain containing 4) Rattus norvegicus
Analyze
Symbol: Setd4
Name: SET domain containing 4
RGD ID: 619899
Description: Predicted to enable protein-lysine N-methyltransferase activity and transcription coactivator activity. Predicted to be involved in several processes, including positive regulation of inflammatory response; positive regulation of macromolecule biosynthetic process; and regulation of cell proliferation in bone marrow. Predicted to be located in cytosol and nucleus. Orthologous to human SETD4 (SET domain containing 4); INTERACTS WITH (+)-schisandrin B; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein RDA279; LOC102556275; Rda279; SET domain-containing protein 4; uncharacterized LOC102556275
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,315,340 - 46,344,024 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1146,323,895 - 46,344,024 (-)EnsemblGRCr8
mRatBN7.21132,829,509 - 32,859,162 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1132,838,063 - 32,858,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1141,532,237 - 41,552,430 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,203,780 - 34,223,971 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,364,634 - 33,384,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01133,781,869 - 33,803,121 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,781,870 - 33,801,999 (-)Ensemblrn6Rnor6.0
Rnor_5.01137,373,163 - 37,395,496 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41133,765,399 - 33,785,529 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,480,548 - 32,500,678 (-)NCBICelera
RGSC_v3.11133,821,642 - 33,829,414 (-)NCBI
Cytogenetic Map11q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetaldehyde  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
epoxiconazole  (ISO)
fipronil  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:12477932   PMID:24738023   PMID:31308046  


Genomics

Comparative Map Data
Setd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,315,340 - 46,344,024 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1146,323,895 - 46,344,024 (-)EnsemblGRCr8
mRatBN7.21132,829,509 - 32,859,162 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1132,838,063 - 32,858,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1141,532,237 - 41,552,430 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,203,780 - 34,223,971 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,364,634 - 33,384,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01133,781,869 - 33,803,121 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,781,870 - 33,801,999 (-)Ensemblrn6Rnor6.0
Rnor_5.01137,373,163 - 37,395,496 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41133,765,399 - 33,785,529 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,480,548 - 32,500,678 (-)NCBICelera
RGSC_v3.11133,821,642 - 33,829,414 (-)NCBI
Cytogenetic Map11q11NCBI
SETD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,034,541 - 36,060,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,034,534 - 36,079,389 (-)Ensemblhg38GRCh38
GRCh372137,406,839 - 37,432,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,328,709 - 36,358,576 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342136,328,709 - 36,358,576NCBI
Celera2122,605,727 - 22,631,704 (-)NCBICelera
Cytogenetic Map21q22.12NCBI
HuRef2122,885,338 - 22,911,268 (-)NCBIHuRef
CHM1_12136,968,665 - 36,994,622 (-)NCBICHM1_1
T2T-CHM13v2.02134,417,599 - 34,443,584 (-)NCBIT2T-CHM13v2.0
Setd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,380,345 - 93,401,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,380,345 - 93,400,951 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381693,583,457 - 93,604,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,583,457 - 93,604,063 (-)Ensemblmm10GRCm38
MGSCv371693,583,705 - 93,604,060 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361693,472,001 - 93,492,343 (-)NCBIMGSCv36mm8
Celera1694,665,886 - 94,686,613 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.52NCBI
Setd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,215,069 - 35,239,511 (-)Ensembl
ChiLan1.0NW_00495540735,215,247 - 35,239,488 (-)NCBIChiLan1.0ChiLan1.0
SETD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,106,229 - 32,183,633 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12126,988,001 - 27,043,555 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,376,892 - 22,431,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12135,737,061 - 35,791,155 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2135,737,061 - 35,791,156 (-)EnsemblpanPan2panpan1.1
SETD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,283,623 - 31,309,527 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,150,596 - 31,309,687 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3130,383,968 - 30,409,896 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03130,581,049 - 30,606,931 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,442,434 - 30,606,862 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,452,631 - 30,478,541 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,466,771 - 30,492,659 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03130,957,454 - 30,983,386 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Setd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497130,842,836 - 30,866,141 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,610,597 - 6,625,009 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,601,811 - 6,624,991 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SETD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13199,564,050 - 199,588,710 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113199,564,048 - 199,589,924 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213209,715,202 - 209,740,816 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SETD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,062,582 - 80,105,863 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,062,040 - 80,085,474 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660547,884,098 - 7,909,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Setd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474524,104,617 - 24,148,617 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474523,928,041 - 24,148,644 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Setd4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1451,015,287 - 51,033,311 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Setd4
315 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:59
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000002308
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
ORF21  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21132,845,673 - 32,845,874 (+)MAPPERmRatBN7.2
Rnor_6.01133,789,481 - 33,789,681NCBIRnor6.0
Rnor_5.01137,381,859 - 37,382,059UniSTSRnor5.0
RGSC_v3.41133,773,011 - 33,773,211UniSTSRGSC3.4
Celera1132,488,160 - 32,488,360UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF388528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002308   ⟹   ENSRNOP00000002308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1146,323,895 - 46,344,024 (-)Ensembl
mRatBN7.2 Ensembl1132,838,065 - 32,858,243 (-)Ensembl
Rnor_6.0 Ensembl1133,781,870 - 33,801,999 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104229   ⟹   ENSRNOP00000082204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1132,838,063 - 32,854,510 (-)Ensembl
RefSeq Acc Id: NM_001113747   ⟹   NP_001107219
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,323,894 - 46,344,024 (-)NCBI
mRatBN7.21132,838,062 - 32,858,190 (-)NCBI
Rnor_6.01133,781,869 - 33,801,999 (-)NCBI
Rnor_5.01137,373,163 - 37,395,496 (-)NCBI
RGSC_v3.41133,765,399 - 33,785,529 (-)RGD
Celera1132,480,548 - 32,500,678 (-)RGD
Sequence:
RefSeq Acc Id: XM_039087971   ⟹   XP_038943899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,323,894 - 46,341,884 (-)NCBI
mRatBN7.21132,838,062 - 32,856,053 (-)NCBI
RefSeq Acc Id: XM_039087979   ⟹   XP_038943907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,323,894 - 46,341,884 (-)NCBI
mRatBN7.21132,838,062 - 32,856,053 (-)NCBI
RefSeq Acc Id: XM_063270278   ⟹   XP_063126348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,323,894 - 46,341,884 (-)NCBI
RefSeq Acc Id: XM_063270280   ⟹   XP_063126350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,323,894 - 46,341,668 (-)NCBI
RefSeq Acc Id: XM_063270281   ⟹   XP_063126351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,327,472 - 46,341,855 (-)NCBI
RefSeq Acc Id: XM_063270282   ⟹   XP_063126352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,329,498 - 46,341,855 (-)NCBI
RefSeq Acc Id: XR_005490970
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,315,340 - 46,341,855 (-)NCBI
mRatBN7.21132,829,509 - 32,859,162 (-)NCBI
RefSeq Acc Id: XR_594989
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,327,499 - 46,341,855 (-)NCBI
mRatBN7.21132,838,062 - 32,859,162 (-)NCBI
Rnor_6.01133,781,869 - 33,803,121 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001107219   ⟸   NM_001113747
- UniProtKB: B0BN36 (UniProtKB/TrEMBL),   A6JLL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002308   ⟸   ENSRNOT00000002308
RefSeq Acc Id: XP_038943907   ⟸   XM_039087979
- Peptide Label: isoform X2
- UniProtKB: A6JLL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943899   ⟸   XM_039087971
- Peptide Label: isoform X1
- UniProtKB: A6JLL5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082204   ⟸   ENSRNOT00000104229
RefSeq Acc Id: XP_063126348   ⟸   XM_063270278
- Peptide Label: isoform X1
- UniProtKB: A6JLL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126350   ⟸   XM_063270280
- Peptide Label: isoform X2
- UniProtKB: A6JLL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126351   ⟸   XM_063270281
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126352   ⟸   XM_063270282
- Peptide Label: isoform X4
Protein Domains
SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN36-F1-model_v2 AlphaFold B0BN36 1-439 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698071
Promoter ID:EPDNEW_R8596
Type:initiation region
Name:Setd4_1
Description:SET domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01133,802,024 - 33,802,084EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619899 AgrOrtholog
BioCyc Gene G2FUF-21814 BioCyc
Ensembl Genes ENSRNOG00000001699 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002308 ENTREZGENE
  ENSRNOT00000002308.7 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1420.10 UniProtKB/TrEMBL
  set domain protein methyltransferase, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7122760 IMAGE-MGC_LOAD
  IMAGE:8370827 IMAGE-MGC_LOAD
InterPro Lys_MTase_YDR198C_prd UniProtKB/TrEMBL
  Rubisco_LSMT_subst-bd_sf UniProtKB/TrEMBL
  Rubisco_subst-bd UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  SETD3_SETD6_MTase UniProtKB/TrEMBL
  SETD4_SET UniProtKB/TrEMBL
KEGG Report rno:245975 UniProtKB/TrEMBL
MGC_CLONE MGC:187669 IMAGE-MGC_LOAD
  MGC:95029 IMAGE-MGC_LOAD
NCBI Gene 245975 ENTREZGENE
PANTHER SET DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE UniProtKB/TrEMBL
Pfam Rubis-subs-bind UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
PhenoGen Setd4 PhenoGen
PIRSF Lys_MTase_YDR198C_prd UniProtKB/TrEMBL
PROSITE SET UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001699 RatGTEx
Superfamily-SCOP SSF82199 UniProtKB/TrEMBL
UniProt A6JLL4 ENTREZGENE, UniProtKB/TrEMBL
  A6JLL5 ENTREZGENE, UniProtKB/TrEMBL
  B0BN36 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Setd4  SET domain containing 4  LOC102556275  uncharacterized LOC102556275  Data merged from RGD:7612584 737654 PROVISIONAL
2013-12-18 LOC102556275  uncharacterized LOC102556275      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-22 Setd4  SET domain containing 4  Rda279  hypothetical protein RDA279  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Rda279  hypothetical protein RDA279      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rda279  hypothetical protein RDA279      Symbol and Name status set to provisional 70820 PROVISIONAL