Advanced Search (OLGA)

Gene: Trdn (triadin) Rattus norvegicus

Analyze

Symbol:

Trdn

Name:

triadin

RGD ID:

619856

Description:

Predicted to enable protein-macromolecule adaptor activity and transmembrane transporter binding activity. Involved in several processes, including cytoplasmic microtubule organization; regulation of release of sequestered calcium ion into cytosol; and response to Aroclor 1254. Located in junctional sarcoplasmic reticulum membrane and plasma membrane. Part of calcium channel complex and junctional membrane complex. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia and catecholaminergic polymorphic ventricular tachycardia 5. Orthologous to human TRDN (triadin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

triadin 1; triadin 32 kDa (TRISK 32); triadin 49 kDa (TRISK 49); triadin 95

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRDN (triadin)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Trdn (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Trdn (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRDN (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRDN (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101962457 (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRDN (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRDN (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Trdn (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Trdn (triadin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TRDN (triadin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Trdn (triadin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	trdn (triadin)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	trdn (triadin)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	trdn	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Allele / Splice:

Trdn^{Tn(sb-T2/Bart3)2.238Mcwi}

Genetic Models:

F344-Trdn^{Tn(sb-T2/Bart3)2.238Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	25,774,765 - 26,229,717 (-)	Ensembl				GRCr8
mRatBN7.2	1	23,955,651 - 24,410,494 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	23,955,651 - 24,410,595 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	23,712,731 - 24,162,882 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	29,712,475 - 30,162,651 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	23,909,818 - 24,359,973 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	25,403,390 - 25,787,664 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	25,403,390 - 25,839,345 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	26,865,461 - 27,248,423 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	24,514,752 - 24,925,948 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	22,661,681 - 23,059,882 (-)	NCBI		Celera
RGSC_v3.1	1	24,517,697 - 24,980,460 (-)	NCBI
Cytogenetic Map	1	p12-p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

catecholaminergic polymorphic ventricular tachycardia (ISO)

catecholaminergic polymorphic ventricular tachycardia 1 (ISO)

catecholaminergic polymorphic ventricular tachycardia 5 (ISO)

diastolic heart failure (ISO)

dilated cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

decabromodiphenyl ether (EXP)

dioxygen (ISO)

diquat (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

flavonoids (EXP)

folic acid (ISO)

genistein (ISO)

glycidol (EXP)

lipopolysaccharide (ISO)

methapyrilene (ISO)

nitrofen (EXP)

okadaic acid (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenylephrine (EXP)

pioglitazone (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

spermine (ISO)

sunitinib (ISO)

tetrachloroethene (ISO)

titanium dioxide (ISO)

triclosan (ISO)

triticonazole (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoplasmic microtubule organization (IMP)

endoplasmic reticulum membrane organization (IMP)

heart contraction (IBA,ISO)

intracellular calcium ion homeostasis (IMP,NAS)

myotube differentiation (IEP)

negative regulation of release of sequestered calcium ion into cytosol (IMP)

positive regulation of cell communication by electrical coupling involved in cardiac conduction (ISO)

positive regulation of release of sequestered calcium ion into cytosol (IMP)

regulation of cardiac muscle cell membrane potential (IBA,ISO)

regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion (ISO)

regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (IBA,IMP,ISO)

regulation of sequestering of calcium ion (IEA)

release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (IBA,ISO)

response to Aroclor 1254 (IEP)

response to bacterium (ISO)

Cellular Component

calcium channel complex (IGI)

junctional membrane complex (IDA,IMP)

junctional sarcoplasmic reticulum membrane (IBA,IDA)

membrane (IEA)

plasma membrane (IBA,IDA,ISO)

sarcolemma (IEA)

sarcoplasmic reticulum (IDA,IEA,ISO)

sarcoplasmic reticulum membrane (IEA)

Molecular Function

protein binding (IPI,ISO)

protein-macromolecule adaptor activity (IBA,ISO)

signaling receptor binding (IEA)

transmembrane transporter binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Immunolocalization of triadin, DHP receptors, and ryanodine receptors in adult and developing skeletal muscle of rats.	Carl SL, etal., Muscle Nerve. 1995 Nov;18(11):1232-43.
2.	Altered expression of triadin 95 causes parallel changes in localized Ca2+ release events and global Ca2+ signals in skeletal muscle cells in culture.	Fodor J, etal., J Physiol. 2008 Dec 1;586(Pt 23):5803-18. Epub 2008 Oct 9.
3.	Role of triadin in the organization of reticulum membrane at the muscle triad.	Fourest-Lieuvin A, etal., J Cell Sci. 2012 Jul 15;125(Pt 14):3443-53. doi: 10.1242/jcs.100958. Epub 2012 Apr 14.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	On the role of junctin in cardiac Ca2+ handling, contractility, and heart failure.	Gergs U, etal., Am J Physiol Heart Circ Physiol. 2007 Jul;293(1):H728-34. Epub 2007 Mar 30.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Cloning and characterization of a new isoform of skeletal muscle triadin.	Marty I, etal., J Biol Chem 2000 Mar 17;275(11):8206-12.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	Trisk 32 regulates IP(3) receptors in rat skeletal myoblasts.	Olah T, etal., Pflugers Arch. 2011 Oct;462(4):599-610. doi: 10.1007/s00424-011-1001-y. Epub 2011 Aug 3.
11.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
12.	Luminal Ca2+ regulation of single cardiac ryanodine receptors: insights provided by calsequestrin and its mutants.	Qin J, etal., J Gen Physiol. 2008 Apr;131(4):325-34. Epub 2008 Mar 17.
13.	Triadin (Trisk 95) overexpression blocks excitation-contraction coupling in rat skeletal myotubes.	Rezgui SS, etal., J Biol Chem. 2005 Nov 25;280(47):39302-8. Epub 2005 Sep 21.
14.	GOA pipeline	RGD automated data pipeline
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	Absence of triadin, a protein of the calcium release complex, is responsible for cardiac arrhythmia with sudden death in human.	Roux-Buisson N, etal., Hum Mol Genet. 2012 Jun 15;21(12):2759-67. doi: 10.1093/hmg/dds104. Epub 2012 Mar 14.
18.	Gene expression profiles following exposure to a developmental neurotoxicant, Aroclor 1254: pathway analysis for possible mode(s) of action.	Royland JE and Kodavanti PR, Toxicol Appl Pharmacol. 2008 Sep 1;231(2):179-96. Epub 2008 May 6.
19.	Protein protein interactions between triadin and calsequestrin are involved in modulation of sarcoplasmic reticulum calcium release in cardiac myocytes.	Terentyev D, etal., J Physiol. 2007 Aug 15;583(Pt 1):71-80. Epub 2007 Jun 14.
20.	Retrograde regulation of store-operated calcium channels by the ryanodine receptor-associated protein triadin 95 in rat skeletal myotubes.	Vassilopoulos S, etal., Cell Calcium. 2007 Feb;41(2):179-85. Epub 2006 Aug 4.

Additional References at PubMed

PMID:9287354	PMID:12955494	PMID:15041652	PMID:15731460	PMID:15927957	PMID:18025088	PMID:19383796	PMID:23012479	PMID:37589058

Genomics

Comparative Map Data

Trdn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	25,774,765 - 26,229,717 (-)	Ensembl				GRCr8
mRatBN7.2	1	23,955,651 - 24,410,494 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	23,955,651 - 24,410,595 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	23,712,731 - 24,162,882 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	29,712,475 - 30,162,651 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	23,909,818 - 24,359,973 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	25,403,390 - 25,787,664 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	25,403,390 - 25,839,345 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	26,865,461 - 27,248,423 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	24,514,752 - 24,925,948 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	22,661,681 - 23,059,882 (-)	NCBI		Celera
RGSC_v3.1	1	24,517,697 - 24,980,460 (-)	NCBI
Cytogenetic Map	1	p12-p11	NCBI

TRDN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	123,216,339 - 123,636,950 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	123,215,088 - 123,637,260 (-)	Ensembl			hg38	GRCh38
GRCh37	6	123,537,484 - 123,958,095 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	123,579,182 - 123,999,641 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	123,580,714 - 123,999,641	NCBI
Celera	6	124,281,651 - 124,701,991 (-)	NCBI		Celera
Cytogenetic Map	6	q22.31	NCBI
HuRef	6	121,115,183 - 121,535,579 (-)	NCBI		HuRef
CHM1_1	6	123,801,225 - 124,221,793 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	124,404,293 - 124,824,746 (-)	NCBI		T2T-CHM13v2.0

Trdn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	32,959,479 - 33,352,705 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	32,956,550 - 33,352,705 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	33,083,483 - 33,476,709 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	33,080,554 - 33,476,709 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	32,803,289 - 33,196,515 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	32,772,897 - 32,923,408 (+)	NCBI		MGSCv36	mm8
Celera	10	33,991,863 - 34,385,108 (+)	NCBI		Celera
Cytogenetic Map	10	A4	NCBI
cM Map	10	18.37	NCBI

Trdn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955436	4,963,945 - 5,266,727 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRDN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	143,213,514 - 143,630,282 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	141,115,209 - 141,534,159 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	121,010,234 - 121,424,644 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	125,133,827 - 125,546,854 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	125,134,433 - 125,546,537 (-)	Ensembl			panPan2	panpan1.1

TRDN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	62,402,763 - 62,762,717 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	62,402,642 - 62,762,722 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	63,211,629 - 63,571,581 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	62,604,717 - 62,967,214 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	62,606,830 - 62,967,138 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	62,540,244 - 62,899,794 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	62,328,116 - 62,688,183 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	62,976,846 - 63,337,432 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101962457
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	113,572,732 - 113,686,223 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936802	442,262 - 634,293 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936802	389,653 - 637,372 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRDN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	39,180,913 - 39,567,240 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	39,180,544 - 39,567,245 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	43,518,886 - 43,723,161 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRDN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	50,145,787 - 50,580,397 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	22,476,403 - 22,891,592 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trdn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624798	7,780,362 - 8,018,719 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Trdn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	207,258,965 - 207,567,902 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Trdn
2209 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	114
Count of miRNA genes:	86
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000017428, ENSRNOT00000042072, ENSRNOT00000067280
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	26564886	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	1	26564886	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	1	28483164	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

D1Wox82

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	24,050,521 - 24,050,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	25,500,229 - 25,500,378	NCBI	Rnor6.0
Rnor_5.0	1	26,960,748 - 26,960,897	UniSTS	Rnor5.0
RGSC_v3.4	1	24,610,373 - 24,610,522	UniSTS	RGSC3.4
Celera	1	22,756,634 - 22,756,783	UniSTS
Cytogenetic Map	1	p11	UniSTS

RH128748

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	24,047,215 - 24,047,395 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	25,496,923 - 25,497,102	NCBI	Rnor6.0
Rnor_5.0	1	26,957,442 - 26,957,621	UniSTS	Rnor5.0
RGSC_v3.4	1	24,607,067 - 24,607,246	UniSTS	RGSC3.4
Celera	1	22,753,328 - 22,753,507	UniSTS
RH 3.4 Map	1	240.7	UniSTS
Cytogenetic Map	1	p11	UniSTS

RH139255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	24,283,170 - 24,283,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	25,711,135 - 25,711,278	NCBI	Rnor6.0
Rnor_5.0	1	27,172,186 - 27,172,329	UniSTS	Rnor5.0
RGSC_v3.4	1	24,849,443 - 24,849,586	UniSTS	RGSC3.4
Celera	1	22,983,754 - 22,983,897	UniSTS
Cytogenetic Map	1	p11	UniSTS

AA849413

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	24,068,403 - 24,068,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	25,517,227 - 25,517,320	NCBI	Rnor6.0
Rnor_5.0	1	26,977,746 - 26,977,839	UniSTS	Rnor5.0
RGSC_v3.4	1	24,628,410 - 24,628,503	UniSTS	RGSC3.4
Celera	1	22,774,368 - 22,774,461	UniSTS
RH 3.4 Map	1	241.6	UniSTS
Cytogenetic Map	1	p11	UniSTS

AI172006

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	23,955,862 - 23,956,005 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	25,403,602 - 25,403,744	NCBI	Rnor6.0
Rnor_5.0	1	26,865,673 - 26,865,815	UniSTS	Rnor5.0
RGSC_v3.4	1	24,514,964 - 24,515,106	UniSTS	RGSC3.4
Celera	1	22,661,893 - 22,662,035	UniSTS
RH 3.4 Map	1	241.6	UniSTS
Cytogenetic Map	1	p11	UniSTS

Genetic Models

This gene Trdn is modified in the following models/strains:

F344-Trdn^{Tn(sb-T2/Bart3)2.238Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	12	65	114	59	58	27	22	27	6	201	120	11	92	37	77	31	2	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF220558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF220559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ243303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ243304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ812275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ812276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042072 ⟹ ENSRNOP00000041570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	25,774,765 - 26,229,717 (-)	Ensembl
mRatBN7.2 Ensembl	1	23,955,651 - 24,410,595 (-)	Ensembl
Rnor_6.0 Ensembl	1	25,405,369 - 25,839,345 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090388 ⟹ ENSRNOP00000069016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	23,955,651 - 24,410,595 (-)	Ensembl
Rnor_6.0 Ensembl	1	25,403,390 - 25,839,198 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092757 ⟹ ENSRNOP00000076056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	25,774,765 - 26,229,700 (-)	Ensembl
mRatBN7.2 Ensembl	1	23,955,651 - 24,410,595 (-)	Ensembl
Rnor_6.0 Ensembl	1	25,716,396 - 25,839,279 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093030 ⟹ ENSRNOP00000075929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	26,032,060 - 26,229,700 (-)	Ensembl
mRatBN7.2 Ensembl	1	24,212,949 - 24,410,595 (-)	Ensembl
Rnor_6.0 Ensembl	1	25,655,253 - 25,787,619 (-)	Ensembl

RefSeq Acc Id:

NM_021666 ⟹ NP_067698

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,229,599 (-)	NCBI
mRatBN7.2	1	23,955,651 - 24,410,494 (-)	NCBI
Rnor_6.0	1	25,403,390 - 25,787,664 (-)	NCBI
Rnor_5.0	1	26,865,461 - 27,248,423 (-)	NCBI
RGSC_v3.4	1	24,514,752 - 24,925,948 (-)	RGD
Celera	1	22,661,681 - 23,059,882 (-)	RGD

Sequence:

show sequence

ATGACTGAGATCACAGCTGAAGGAAATGCATCTATAACCACAACTGTGATAGACAACAAAAATG
GATCTGTTCCCAAGTCCCCTGGAAAGGTGCTGAAGAGGACTGTCACCGAAGACATCGTGACAAC
ATTCAGCTCCCCTGCAGCCTGGCTTCTGGTCATCGCCCTGATTATCACCTGGTCAGCTGTTGCT
ATTGTGATGTTTGATTTAGTGGACTACAAAAACTTTTCAGCAAGCTCCATCGCCAAGATTGGCT
CTGATCCTCTAAAACTAGTGAACGATGCTGTGGAGGAAACAACAGACTGGATCTATGGCTTCTT
CTCTTTGCTATCTGATATCATCTCATCTGATGGTGATGAAGATGATGAGGATGCAGATGAGGAC
ATTGACAAAGGAGAAATAGAAGAACCTCCCTTAAAAAGAAAAGAAATACAAAAAGAGAAGGCTG
AAAAGCAGGAGAAACCTGAGAAGAAAATACAAACTAAAGTTTCGCACAGAGAAAAGGAGAAAGG
AAAAGAAAAATTAAAAGGAGAAAAACCTGAGAAGAAAGCAACTCACAAGGAGAAACTTGAGAAA
AAAGAAAGAACAGAGACAAAGATGGCAGCAAAAGAGGACAAGAAAATTAAGACTAAGGAAAAGA
CCGAAGAAAAGGCTAAGAAGGAAATGAAAGTTGGGAAACAGGAGAAAGCGAAACCAGCAGCTGC
AAAAGCCAAAGAAACTCCGAAAACAACACCGAAAGCCAGAGAGAAGGATGACAAAGAAACGCCA
GCTGTGCCCAAGCATGAGCAGAAAGATCAGTATGCGTTCTGTCGATATATGATTGACATGTTTG
TCCATGGGGATTTAAAACCAGGACAAAGCCCAGCTGTGCCACCACCATCATTGACAGCTTCCAG
ACCTGCTTTGTCAACACCATCACTGGAAGAAAAAGAAAAAGAAGAAAAGAAGAAAGTGGAGAAG
AAAGTTACTTCTGATACAAAAAAGAAAGAAAAAGGAGAAGCCAAAAAGAAAAGCGAGAAAGAAA
CTGTCATTGATGGGAAAGGAAAAGAGCCAGGAAAACCTCCTGAAACAAAACAAACAACCACCAA
ACTCACAACACAAGCTGCAGCTACCAAAGATGAGAAGAAAGAAGATTCCAAGAAAATGAAAAAA
CCTCCAGAAGAGAAACCCAAGGGAAAAAAACAGGAAAAGAAAGAAAAGCACATAGAACCAGCAA
AGACACCAAAAAAGGAACATCCAGCTCCAAGTGAAAAACACAGAAAAGCAAAAGCTGAGCAAGC
CAAAGAAGAGATTGCTCCTGCCTCAACAAAAAAGGCCCTGCATGGAAAGAAAGAAGAGAAAGCC
AAGACAGTGGAGCAAGGCAAAGATGTAAAGCCTAAACTACCACAGCCACAACTAAAAAAGGAAG
AGAAGTCCGAGCCACAACCAAAAAAAGAAGTGAAGTTGGAGACACAACTAAAAAAAGAAGAGAA
GTCAGAGCCTCAAGTTAAGAAGGAAGCAAAACTAGCATCATCTGAAAAAGGCCAAACACGCAAA
CAGAACATCACCAGACCAGAGCAAGTTATTCCTCATGGTAAACCAGAACAAAAAGTTCCCAAAC
AGATAAAAGCTATTACAGCAGAAAAGACAGAAAAAGCTGAACGCCAAGAAAAATACCATCCATC
TATAAAAACAGAGGGAAAACCAGAAGTCACAGACTCAGGGAAGAAGAAAATTGAAAAACCTGAA
AAGGAAAGTAAAGTTCCACCAAAACAAGAAAATCTTCAGGTGCGCAATGTGACTAGAGCGGAAA
AACGTGGAAAAATATCAAAAGATTCCAAAGATGCACCAGCTCCAAAGAAAGATAAAGACTCCAA
AGATGTCCTGCATTCAAAGAAAGATAAAGAAGTAACTAATAATGTGTCTTCACCAAAGAAGCAA
AAAAGTCCCATCAGTTTCTTCCAATGTGTCTACTTGGATGGGTACAATGGCTATGGATTTCAGT
TTCCTGTCACTCCTGTCCAACACTCTGGAGAGAACCCTGGCAAATCAAACTCTCCAGGACAGAA
GCAGCAAGAACAATAGACACCCATACATGACCCTGACAACTGCTTTTACATCATGAAAGTGGAA
TCTTCTCTTTTGTTCACAGTGGCACGGGCAGTCAAAACTAACCAGTGCTGAGATTTCATTGTAA
ACATTTTGCCTGGCATAAAGAAATAGCATGGACAAAAGGGTTGACTAATAAGCAAATGTGTTGA
GGGTCTAATACTTGAGAATCTTTATTTGTGTCTGTTGCTATAGGAGGGGTACTTACATTCAGCT
CTTTCTAGTCGTTATAAGGTAGTAATCTCATTAAAGTTTACTTTTAAATGTAATTGGCACAATT
ACAAAATGAGATTTATGACTTCAGGTAGATAATTTTTAATTTGGTTATATAGACTGTGTTCTAA
TTTTAAAGAGTACAGGAGCATATATAAAAGTTATTCTTCTGCATCATGTGGGTAGACTCAGTTT
ACCCAAAAACCTATGTGCGTTATTACATTCATTTCTGTTTCTAGTTCTATTGTGTCAAGACTCT
ACATAGGTGTGTCTTACACCAGAGTGCTCTAAATCCCTTGTCATATCTAACAGATGGGACATGA
CAAAGAATAAGTACTTGTTGGATCTTATCTCTGAGGTTGTCTTGAGCTATGCTTAAGACATTCT
CTCTTATGGACATATACTTGCAGTTAAGCAGGTCTGGTAAACCACTTGCTTAATATGCAAGTTA
ATGAGATATGAAATTTTCACATTTCTCCAGATTGTGCCCCAGTAAATCCATCACCTGGGTGAAG
GTTTAGATCAAACATTAACTATGGTTGACAAATACAAACATAGTTTTATTTCTCAATACATTCT
TTCTGTGAGAGTAAATTTTTTTTTCAAATGGAAACAATACAAATTCCATAAATGTTTAAGCGAG
ATATTTTGGGCCTAGGCATGTTTATGAGATGCCTTTCTTTTGGCTGATTGAACATTAACACCAG
TTAAATGAATGGCAGTTTCTAATATACGTGTCCAGGCATCACTGAAAATAACATCTTCTTGGTA
ATACAAACACTCGATTTTAATGAACTTTTCTTATCAACTCTAGAAAACATGACTGTACTTTTTC
TTCAAGTTTCCAGTTGTAGCTGAACTTGTGACAAATTAACAAGTTCAACTCATGGAAATAACTT
GAGTTACCATTTCTGGCATTATCAGAAGCTCAGCCAATGCTGAGCTACTGACTTTGTGAGCAAG
CTGTGTGGTTGGTCTTAAAGTACTACAGCCAAACACAGTTCTTGAGGTCCAAGACAAAGGTTCA
TTTTATCAATATTCAGGTAAGATGTAGATCAGATACATCATTAGTATTAATGATGGAATGTTGG
TGACTCTTGTAAGAAAGTCAGCTTCAACCAGATGCTGACAGACTGGATTCACACTACAGAAACC
AACACTACAATGAACTAGTTTAATGGAGCCATTTGGAGGGGAAGGAGTACATAATTGACCAGAG
CAAATGATACCATCTTTCAAAGCCACTTCATTCAGCAATTCAAACTCACAAGGAGAACAGTGGA
TAAAGCGCTCTACTTAGTTGGAGTTTCACCCATGCAAGTTCCTGAGTATGGAACAGAGAACAAA
TGTGACAGTTGTTTTAAAAGACATGCTACAGAATGGGTTATCCACTAAGTTATTACCTTTCAAT
GACTATATACTAAGCTCTTAGTCTTTCTATTCTGTGTCAGATAATACAGCAAAAGGTTTTACTT
CATGCTACACTGGCACAGTAAATGACATTCAAAACTGCATTATATATATATATATATATATATA
TATATATATATATATATATTGGGTCTGTATCTCCAGGTTACCAGGAACCATCAAAACAAACAGC
TCAGAGTTGTTTTGGAGACAGATAAAGTGTCTTAATATGGATTTGTTTGAAAACACTTTCTGAA
ATTATGGTTTTGGAGATTACATTAATCTTATCTCCACCAATTTCGAAATATCCATCTATTTTCT
TTATGAAACAAATTGACAAAATATAAGAGATGTTACTATAAATTTAGATGTTAGAGAAAACAAT
TATGGTATAATTAATATTAACAATAATTATTACATTTTGTCTAAAATTTCAATGTTGAGTATAA
TTTGAAAATATTATCCAAACTGGCATCTGTTTGTATCTTTACATTAATAAAATACTTCTGACCC
CTGAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063272290 ⟹ XP_063128360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272296 ⟹ XP_063128366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272299 ⟹ XP_063128369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272302 ⟹ XP_063128372

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272306 ⟹ XP_063128376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272311 ⟹ XP_063128381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272312 ⟹ XP_063128382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272316 ⟹ XP_063128386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272319 ⟹ XP_063128389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272320 ⟹ XP_063128390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272323 ⟹ XP_063128393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272326 ⟹ XP_063128396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,774,765 - 26,229,805 (-)	NCBI

RefSeq Acc Id:

XM_063272330 ⟹ XP_063128400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,866,197 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272332 ⟹ XP_063128402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,866,197 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272337 ⟹ XP_063128407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,866,197 - 26,230,069 (-)	NCBI

RefSeq Acc Id:

XM_063272343 ⟹ XP_063128413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	25,927,987 - 26,230,069 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_067698	(Get FASTA)	NCBI Sequence Viewer
	XP_063128360	(Get FASTA)	NCBI Sequence Viewer
	XP_063128366	(Get FASTA)	NCBI Sequence Viewer
	XP_063128369	(Get FASTA)	NCBI Sequence Viewer
	XP_063128372	(Get FASTA)	NCBI Sequence Viewer
	XP_063128376	(Get FASTA)	NCBI Sequence Viewer
	XP_063128381	(Get FASTA)	NCBI Sequence Viewer
	XP_063128382	(Get FASTA)	NCBI Sequence Viewer
	XP_063128386	(Get FASTA)	NCBI Sequence Viewer
	XP_063128389	(Get FASTA)	NCBI Sequence Viewer
	XP_063128390	(Get FASTA)	NCBI Sequence Viewer
	XP_063128393	(Get FASTA)	NCBI Sequence Viewer
	XP_063128396	(Get FASTA)	NCBI Sequence Viewer
	XP_063128400	(Get FASTA)	NCBI Sequence Viewer
	XP_063128402	(Get FASTA)	NCBI Sequence Viewer
	XP_063128407	(Get FASTA)	NCBI Sequence Viewer
	XP_063128413	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF29539	(Get FASTA)	NCBI Sequence Viewer
	AAF29540	(Get FASTA)	NCBI Sequence Viewer
	CAB64603	(Get FASTA)	NCBI Sequence Viewer
	CAB64604	(Get FASTA)	NCBI Sequence Viewer
	CAH23273	(Get FASTA)	NCBI Sequence Viewer
	CAH23274	(Get FASTA)	NCBI Sequence Viewer
	EDL87716	(Get FASTA)	NCBI Sequence Viewer
	EDL87717	(Get FASTA)	NCBI Sequence Viewer
	EDL87718	(Get FASTA)	NCBI Sequence Viewer
	EDL87719	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041570
GenBank Protein	Q9QX75	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_067698 ⟸ NM_021666

- UniProtKB:

Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot), A6JUQ9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTEITAEGNASITTTVIDNKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITWSAVA
IVMFDLVDYKNFSASSIAKIGSDPLKLVNDAVEETTDWIYGFFSLLSDIISSDGDEDDEDADED
IDKGEIEEPPLKRKEIQKEKAEKQEKPEKKIQTKVSHREKEKGKEKLKGEKPEKKATHKEKLEK
KERTETKMAAKEDKKIKTKEKTEEKAKKEMKVGKQEKAKPAAAKAKETPKTTPKAREKDDKETP
AVPKHEQKDQYAFCRYMIDMFVHGDLKPGQSPAVPPPSLTASRPALSTPSLEEKEKEEKKKVEK
KVTSDTKKKEKGEAKKKSEKETVIDGKGKEPGKPPETKQTTTKLTTQAAATKDEKKEDSKKMKK
PPEEKPKGKKQEKKEKHIEPAKTPKKEHPAPSEKHRKAKAEQAKEEIAPASTKKALHGKKEEKA
KTVEQGKDVKPKLPQPQLKKEEKSEPQPKKEVKLETQLKKEEKSEPQVKKEAKLASSEKGQTRK
QNITRPEQVIPHGKPEQKVPKQIKAITAEKTEKAERQEKYHPSIKTEGKPEVTDSGKKKIEKPE
KESKVPPKQENLQVRNVTRAEKRGKISKDSKDAPAPKKDKDSKDVLHSKKDKEVTNNVSSPKKQ
KSPISFFQCVYLDGYNGYGFQFPVTPVQHSGENPGKSNSPGQKQQEQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000076056 ⟸ ENSRNOT00000092757

Ensembl Acc Id:

ENSRNOP00000069016 ⟸ ENSRNOT00000090388

Ensembl Acc Id:

ENSRNOP00000041570 ⟸ ENSRNOT00000042072

Ensembl Acc Id:

ENSRNOP00000075929 ⟸ ENSRNOT00000093030

RefSeq Acc Id:	XP_063128390 ⟸ XM_063272320
- Peptide Label:	isoform X10
- UniProtKB:	F1LY11 (UniProtKB/TrEMBL), A0A8L2RBI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128386 ⟸ XM_063272316
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063128376 ⟸ XM_063272306
- Peptide Label:	isoform X5
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128393 ⟸ XM_063272323
- Peptide Label:	isoform X11
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128382 ⟸ XM_063272312
- Peptide Label:	isoform X7
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128389 ⟸ XM_063272319
- Peptide Label:	isoform X9
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128372 ⟸ XM_063272302
- Peptide Label:	isoform X4
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128381 ⟸ XM_063272311
- Peptide Label:	isoform X6
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128369 ⟸ XM_063272299
- Peptide Label:	isoform X3
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128366 ⟸ XM_063272296
- Peptide Label:	isoform X2
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128360 ⟸ XM_063272290
- Peptide Label:	isoform X1
- UniProtKB:	Q9QX76 (UniProtKB/Swiss-Prot), Q9QX75 (UniProtKB/Swiss-Prot), Q9JKZ6 (UniProtKB/Swiss-Prot), Q9JKZ5 (UniProtKB/Swiss-Prot), Q5DVI7 (UniProtKB/Swiss-Prot), Q5DVI6 (UniProtKB/Swiss-Prot), E9PTN7 (UniProtKB/Swiss-Prot), A0A0G2JU95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128396 ⟸ XM_063272326
- Peptide Label:	isoform X12
- UniProtKB:	A6JUR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128402 ⟸ XM_063272332
- Peptide Label:	isoform X14
- UniProtKB:	A6JUR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128407 ⟸ XM_063272337
- Peptide Label:	isoform X15
- UniProtKB:	A6JUR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128400 ⟸ XM_063272330
- Peptide Label:	isoform X13
- UniProtKB:	A6JUR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128413 ⟸ XM_063272343
- Peptide Label:	isoform X16

Protein Domains

Aspartyl beta-hydroxylase/Triadin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QX75-F1-model_v2	AlphaFold	Q9QX75	1-687	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619856	AgrOrtholog
BioCyc Gene	G2FUF-62001	BioCyc
Ensembl Genes	ENSRNOG00000012609	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000042072	ENTREZGENE
InterPro	Asp-B-hydro/Triadin_dom	UniProtKB/Swiss-Prot
	Triadin	UniProtKB/Swiss-Prot
KEGG Report	rno:59299	UniProtKB/Swiss-Prot
NCBI Gene	59299	ENTREZGENE
PANTHER	PTHR14106	UniProtKB/Swiss-Prot
	TRIADIN	UniProtKB/Swiss-Prot
Pfam	Asp-B-Hydro_N	UniProtKB/Swiss-Prot
PhenoGen	Trdn	PhenoGen
RatGTEx	ENSRNOG00000012609	RatGTEx
UniProt	A0A0G2JU95	ENTREZGENE
	A0A1B0GWK5_RAT	UniProtKB/TrEMBL
	A0A8L2RBI2	ENTREZGENE, UniProtKB/TrEMBL
	A6JUQ9	ENTREZGENE, UniProtKB/TrEMBL
	A6JUR0	ENTREZGENE, UniProtKB/TrEMBL
	A6JUR1	ENTREZGENE, UniProtKB/TrEMBL
	E9PTN7	ENTREZGENE
	F1LY11	ENTREZGENE, UniProtKB/TrEMBL
	Q5DVI6	ENTREZGENE
	Q5DVI7	ENTREZGENE
	Q9JKZ5	ENTREZGENE
	Q9JKZ6	ENTREZGENE
	Q9QX75	ENTREZGENE
	Q9QX76	ENTREZGENE
	TRDN_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	E9PTN7	UniProtKB/Swiss-Prot
	Q5DVI6	UniProtKB/Swiss-Prot
	Q5DVI7	UniProtKB/Swiss-Prot
	Q9JKZ5	UniProtKB/Swiss-Prot
	Q9JKZ6	UniProtKB/Swiss-Prot
	Q9QX76	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Trdn	triadin		triadin 1	Name updated	1299863	APPROVED
2002-08-07	Trdn	triadin 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in adult rat skeletal muscle and also in rat embryo skeletal muscle	634424

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM