Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) - Rat Genome Database

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Gene: Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) Rattus norvegicus
Analyze
Symbol: Nsmf
Name: NMDA receptor synaptonuclear signaling and neuronal migration factor
RGD ID: 619819
Description: Enables calcium-dependent protein binding activity. Involved in several processes, including cellular response to electrical stimulus; postsynapse to nucleus signaling pathway; and regulation of dendrite morphogenesis. Located in several cellular components, including dendrite; nucleus; and perikaryon. Part of euchromatin. Is active in glutamatergic synapse and postsynapse. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia and hypogonadotropic hypogonadism 9 with or without anosmia. Orthologous to human NSMF (NMDA receptor synaptonuclear signaling and neuronal migration factor); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Jac; Jacob; juxtasynaptic attractor of caldendrin on dendritic boutons protein; MGC105348; nasal embryonic LHRH factor; nasal embryonic luteinizing hormone-releasing hormone factor; Nelf
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Nuclear translocation of jacob in hippocampal neurons after stimuli inducing long-term potentiation but not long-term depression. Behnisch T, etal., PLoS One. 2011 Feb 18;6(2):e17276. doi: 10.1371/journal.pone.0017276.
2. Caldendrin-Jacob: a protein liaison that couples NMDA receptor signalling to the nucleus. Dieterich DC, etal., PLoS Biol. 2008 Feb;6(2):e34. doi: 10.1371/journal.pbio.0060034.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Encoding and transducing the synaptic or extrasynaptic origin of NMDA receptor signals to the nucleus. Karpova A, etal., Cell. 2013 Feb 28;152(5):1119-33. doi: 10.1016/j.cell.2013.02.002.
5. Dendritic mRNA targeting of Jacob and N-methyl-d-aspartate-induced nuclear translocation after calpain-mediated proteolysis. Kindler S, etal., J Biol Chem. 2009 Sep 11;284(37):25431-40. doi: 10.1074/jbc.M109.022137. Epub 2009 Jul 16.
6. Novel gene expressed in nasal region influences outgrowth of olfactory axons and migration of luteinizing hormone-releasing hormone (LHRH) neurons. Kramer PR and Wray S, Genes Dev 2000 Jul 15;14(14):1824-34.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
10. Digenic mutations account for variable phenotypes in idiopathic hypogonadotropic hypogonadism. Pitteloud N, etal., J Clin Invest. 2007 Feb;117(2):457-63. Epub 2007 Jan 18.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19014935   PMID:19654008   PMID:20025934   PMID:23539133   PMID:25248434   PMID:26514267   PMID:29476059   PMID:33436037  


Genomics

Comparative Map Data
Nsmf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBICelera
Cytogenetic Map3p13NCBI
NSMF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,447,570 - 137,459,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,447,570 - 137,459,334 (-)EnsemblGRCh38hg38GRCh38
GRCh379140,342,022 - 140,353,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,462,498 - 139,473,575 (-)NCBINCBI36Build 36hg18NCBI36
Build 349137,618,513 - 137,629,591NCBI
Celera9110,868,305 - 110,878,574 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,806,039 - 109,817,921 (-)NCBIHuRef
CHM1_19140,490,446 - 140,501,310 (-)NCBICHM1_1
T2T-CHM13v2.09149,698,122 - 149,709,468 (-)NCBIT2T-CHM13v2.0
Nsmf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,944,370 - 24,952,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,944,367 - 24,952,893 (+)EnsemblGRCm39 Ensembl
GRCm38225,054,361 - 25,062,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37224,909,899 - 24,918,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,876,388 - 24,884,890 (+)NCBIMGSCv36mm8
Celera224,781,465 - 24,789,967 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.94NCBI
Nsmf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,369,218 - 5,375,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,368,384 - 5,376,480 (-)NCBIChiLan1.0ChiLan1.0
NSMF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,928,740 - 1,941,379 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,931,082 - 1,943,712 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,518,698 - 108,531,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,482,420 - 137,495,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,482,420 - 137,495,990 (-)Ensemblpanpan1.1panPan2
NSMF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,287,019 - 48,295,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,287,014 - 48,294,780 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,474,255 - 47,482,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,149,164 - 49,157,603 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,149,158 - 49,157,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,925,534 - 47,933,972 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,224,513 - 48,232,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,271,008 - 48,279,446 (+)NCBIUU_Cfam_GSD_1.0
Nsmf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSMF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,980,663 - 313,982,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSMF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112734,863 - 744,214 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12735,127 - 744,659 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,603,362 - 4,612,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsmf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760574,920 - 583,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760575,805 - 583,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nsmf
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:897
Count of miRNA genes:199
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000012129, ENSRNOT00000042100, ENSRNOT00000048137, ENSRNOT00000048353, ENSRNOT00000061303
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat

Markers in Region
RH132853  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,864,063 - 7,864,265 (+)MAPPERmRatBN7.2
Rnor_6.032,264,445 - 2,264,646NCBIRnor6.0
Rnor_5.032,245,693 - 2,245,894UniSTSRnor5.0
RGSC_v3.435,203,705 - 5,203,906UniSTSRGSC3.4
Celera32,693,289 - 2,693,490UniSTS
Cytogenetic Map3p13UniSTS
RH132502  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,861,242 - 7,861,452 (+)MAPPERmRatBN7.2
Rnor_6.032,261,624 - 2,261,833NCBIRnor6.0
Rnor_5.032,242,872 - 2,243,081UniSTSRnor5.0
RGSC_v3.435,200,884 - 5,201,093UniSTSRGSC3.4
Celera32,690,468 - 2,690,677UniSTS
RH 3.4 Map1845.3UniSTS
Cytogenetic Map3p13UniSTS
UniSTS:224573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,870,419 - 7,870,575 (+)MAPPERmRatBN7.2
Rnor_6.032,270,801 - 2,270,956NCBIRnor6.0
Rnor_5.032,252,049 - 2,252,204UniSTSRnor5.0
RGSC_v3.435,210,061 - 5,210,216UniSTSRGSC3.4
Celera32,699,645 - 2,699,800UniSTS
Cytogenetic Map3p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 28 10 10 2 10 74 20 33 9
Low 1 15 47 31 17 31 8 11 15 8 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_057190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ293697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ293698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ293699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000012129   ⟹   ENSRNOP00000012129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042100   ⟹   ENSRNOP00000044714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048137   ⟹   ENSRNOP00000045393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048353   ⟹   ENSRNOP00000040572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000061303   ⟹   ENSRNOP00000058016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,321 - 2,270,743 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102542   ⟹   ENSRNOP00000094577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109243   ⟹   ENSRNOP00000089293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl37,861,872 - 7,868,361 (+)Ensembl
RefSeq Acc Id: NM_001270626   ⟹   NP_001257555
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270627   ⟹   NP_001257556
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270628   ⟹   NP_001257557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_057190   ⟹   NP_476538
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
RGSC_v3.435,201,581 - 5,210,256 (+)RGD
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NR_073057
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233554   ⟹   XP_006233616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,018 - 28,268,790 (+)NCBI
mRatBN7.237,861,846 - 7,870,615 (+)NCBI
Rnor_6.032,262,173 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063283014   ⟹   XP_063139084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,020 - 28,268,790 (+)NCBI
RefSeq Acc Id: XM_063283015   ⟹   XP_063139085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,018 - 28,268,790 (+)NCBI
RefSeq Acc Id: NP_476538   ⟸   NM_057190
- Peptide Label: isoform 1
- UniProtKB: Q9EPI5 (UniProtKB/Swiss-Prot),   Q9EPI4 (UniProtKB/Swiss-Prot),   Q7TSC8 (UniProtKB/Swiss-Prot),   Q7TSC6 (UniProtKB/Swiss-Prot),   Q5PPF6 (UniProtKB/Swiss-Prot),   Q9EPI6 (UniProtKB/Swiss-Prot),   A0A140TAI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257555   ⟸   NM_001270626
- Peptide Label: isoform 2
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL),   D3ZVR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257556   ⟸   NM_001270627
- Peptide Label: isoform 3
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257557   ⟸   NM_001270628
- Peptide Label: isoform 4
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233616   ⟸   XM_006233554
- Peptide Label: isoform X2
- UniProtKB: Q9EPI6 (UniProtKB/Swiss-Prot),   Q9EPI5 (UniProtKB/Swiss-Prot),   Q9EPI4 (UniProtKB/Swiss-Prot),   Q7TSC8 (UniProtKB/Swiss-Prot),   Q7TSC6 (UniProtKB/Swiss-Prot),   Q5PPF6 (UniProtKB/Swiss-Prot),   F1LLY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000045393   ⟸   ENSRNOT00000048137
RefSeq Acc Id: ENSRNOP00000012129   ⟸   ENSRNOT00000012129
RefSeq Acc Id: ENSRNOP00000058016   ⟸   ENSRNOT00000061303
RefSeq Acc Id: ENSRNOP00000040572   ⟸   ENSRNOT00000048353
RefSeq Acc Id: ENSRNOP00000044714   ⟸   ENSRNOT00000042100
RefSeq Acc Id: ENSRNOP00000094577   ⟸   ENSRNOT00000102542
RefSeq Acc Id: ENSRNOP00000089293   ⟸   ENSRNOT00000109243
RefSeq Acc Id: XP_063139085   ⟸   XM_063283015
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139084   ⟸   XM_063283014
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPI6-F1-model_v2 AlphaFold Q9EPI6 1-532 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691857
Promoter ID:EPDNEW_R2381
Type:multiple initiation site
Name:Nsmf_1
Description:NMDA receptor synaptonuclear signaling and neuronal migrationfactor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.032,262,259 - 2,262,319EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619819 AgrOrtholog
BioCyc Gene G2FUF-50488 BioCyc
Ensembl Genes ENSRNOG00000008810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012129.8 UniProtKB/TrEMBL
  ENSRNOT00000042100 ENTREZGENE
  ENSRNOT00000042100.5 UniProtKB/TrEMBL
  ENSRNOT00000048137.6 UniProtKB/TrEMBL
  ENSRNOT00000048353 ENTREZGENE
  ENSRNOT00000048353.6 UniProtKB/TrEMBL
  ENSRNOT00000061303 ENTREZGENE
  ENSRNOT00000061303.5 UniProtKB/TrEMBL
  ENSRNOT00000102542.1 UniProtKB/TrEMBL
  ENSRNOT00000109243.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
  iswi atpase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7318793 IMAGE-MGC_LOAD
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  NSMF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117536 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105348 IMAGE-MGC_LOAD
NCBI Gene 117536 ENTREZGENE
PANTHER NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR32061 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PhenoGen Nsmf PhenoGen
PROSITE PS50096 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008810 RatGTEx
UniProt A0A140TAI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABM3_RAT UniProtKB/TrEMBL
  A0A8I6GKU3_RAT UniProtKB/TrEMBL
  D3ZVR5 ENTREZGENE, UniProtKB/TrEMBL
  D4A9M2 ENTREZGENE, UniProtKB/TrEMBL
  D4AAJ2_RAT UniProtKB/TrEMBL
  F1LLY3 ENTREZGENE, UniProtKB/TrEMBL
  NSMF_RAT UniProtKB/Swiss-Prot
  Q5PPF6 ENTREZGENE
  Q7TSC6 ENTREZGENE
  Q7TSC8 ENTREZGENE
  Q9EPI4 ENTREZGENE
  Q9EPI5 ENTREZGENE
  Q9EPI6 ENTREZGENE
UniProt Secondary Q5PPF6 UniProtKB/Swiss-Prot
  Q7TSC6 UniProtKB/Swiss-Prot
  Q7TSC8 UniProtKB/Swiss-Prot
  Q9EPI4 UniProtKB/Swiss-Prot
  Q9EPI5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-06 Nsmf  NMDA receptor synaptonuclear signaling and neuronal migration factor  Nelf  nasal embryonic LHRH factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Nelf  nasal embryonic LHRH factor      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Nelf  nasal embryonic LHRH factor      Symbol and Name status set to provisional 70820 PROVISIONAL