Ppp4r1 (protein phosphatase 4, regulatory subunit 1) - Rat Genome Database

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Gene: Ppp4r1 (protein phosphatase 4, regulatory subunit 1) Rattus norvegicus
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Symbol: Ppp4r1
Name: protein phosphatase 4, regulatory subunit 1
RGD ID: 619798
Description: Predicted to enable protein phosphatase regulator activity. Predicted to be active in cytoplasm. Orthologous to human PPP4R1 (protein phosphatase 4 regulatory subunit 1); INTERACTS WITH 2,6-dinitrotoluene; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Pp4r1; serine/threonine-protein phosphatase 4 regulatory subunit 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,836,950 - 112,897,490 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9112,838,812 - 112,897,557 (+)EnsemblGRCr8
mRatBN7.29105,391,271 - 105,450,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9113,798,599 - 113,859,120 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,905,997 - 118,969,026 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,264,559 - 117,324,969 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,515,312 - 113,573,308 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)Ensemblrn6Rnor6.0
Rnor_5.09113,066,545 - 113,105,528 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49104,572,704 - 104,611,601 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera9102,770,161 - 102,827,110 (+)NCBICelera
RGSC_v3.19104,782,185 - 104,821,080 (+)NCBI
Cytogenetic Map9q37NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Cloning and characterization of a novel subunit of protein serine/threonine phosphatase 4 from mesangial cells. Wada T, etal., J Am Soc Nephrol 2001 Dec;12(12):2601-8.
Additional References at PubMed
PMID:15489334   PMID:28131823  


Genomics

Comparative Map Data
Ppp4r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,836,950 - 112,897,490 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9112,838,812 - 112,897,557 (+)EnsemblGRCr8
mRatBN7.29105,391,271 - 105,450,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9113,798,599 - 113,859,120 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,905,997 - 118,969,026 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,264,559 - 117,324,969 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,515,312 - 113,573,308 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)Ensemblrn6Rnor6.0
Rnor_5.09113,066,545 - 113,105,528 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49104,572,704 - 104,611,601 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera9102,770,161 - 102,827,110 (+)NCBICelera
RGSC_v3.19104,782,185 - 104,821,080 (+)NCBI
Cytogenetic Map9q37NCBI
PPP4R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,546,794 - 9,617,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,546,791 - 9,615,240 (-)Ensemblhg38GRCh38
GRCh37189,546,792 - 9,614,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,536,792 - 9,604,600 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34189,536,841 - 9,604,567NCBI
Celera189,431,022 - 9,498,791 (-)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,509,276 - 9,576,873 (-)NCBIHuRef
CHM1_1189,546,520 - 9,614,326 (-)NCBICHM1_1
T2T-CHM13v2.0189,710,190 - 9,781,391 (-)NCBIT2T-CHM13v2.0
Ppp4r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,089,253 - 66,148,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,089,568 - 66,148,921 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381765,782,543 - 65,841,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,782,573 - 65,841,926 (+)Ensemblmm10GRCm38
MGSCv371766,132,695 - 66,191,266 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361765,719,688 - 65,741,389 (+)NCBIMGSCv36mm8
Celera1770,106,657 - 70,145,143 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Ppp4r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,515,057 - 2,568,860 (+)Ensembl
ChiLan1.0NW_0049554022,529,335 - 2,568,621 (+)NCBIChiLan1.0ChiLan1.0
PPP4R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,835,624 - 28,906,818 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,528,218 - 14,599,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,671,010 - 4,742,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,957,754 - 7,022,996 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,974,934 - 7,022,996 (+)EnsemblpanPan2panpan1.1
PPP4R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,524,483 - 75,582,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,525,249 - 75,583,553 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha774,920,570 - 74,981,437 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0775,583,143 - 75,644,350 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,583,161 - 75,644,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,281,276 - 75,342,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,298,587 - 75,360,124 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,608,737 - 75,670,013 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp4r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,547,917 - 2,597,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,790,837 - 1,826,245 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,776,194 - 1,826,243 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP4R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,462,855 - 98,544,477 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1698,462,833 - 98,539,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP4R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,417,293 - 68,488,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,418,292 - 68,488,176 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605043,369,057 - 43,441,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp4r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,150,135 - 18,206,898 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477018,150,135 - 18,206,835 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp4r1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14175,774,933 - 175,831,947 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppp4r1
408 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:511
Count of miRNA genes:260
Interacting mature miRNAs:316
Transcripts:ENSRNOT00000066793
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat

Markers in Region
RH132764  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,450,790 - 105,450,983 (+)MAPPERmRatBN7.2
Rnor_6.09113,573,473 - 113,573,665NCBIRnor6.0
Rnor_5.09113,105,693 - 113,105,885UniSTSRnor5.0
RGSC_v3.49104,611,766 - 104,611,958UniSTSRGSC3.4
Celera9102,827,275 - 102,827,467UniSTS
Cytogenetic Map9q37UniSTS
RH139106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,450,826 - 105,450,983 (+)MAPPERmRatBN7.2
Rnor_6.09113,573,509 - 113,573,665NCBIRnor6.0
Rnor_5.09113,105,729 - 113,105,885UniSTSRnor5.0
RGSC_v3.49104,611,802 - 104,611,958UniSTSRGSC3.4
Celera9102,827,311 - 102,827,467UniSTS
Cytogenetic Map9q37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 13 79 210 91 90 59 149 59 6 477 271 22 188 117 120 31 33 33

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_080907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF332004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066793   ⟹   ENSRNOP00000061977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,838,812 - 112,897,557 (+)Ensembl
mRatBN7.2 Ensembl9105,391,938 - 105,450,625 (+)Ensembl
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104139   ⟹   ENSRNOP00000090902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,839,183 - 112,897,495 (+)Ensembl
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111258   ⟹   ENSRNOP00000097964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,855,719 - 112,897,501 (+)Ensembl
mRatBN7.2 Ensembl9105,408,035 - 105,450,633 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129820   ⟹   ENSRNOP00000107554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,838,864 - 112,897,493 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139243   ⟹   ENSRNOP00000109427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,858,385 - 112,897,557 (+)Ensembl
RefSeq Acc Id: NM_080907   ⟹   NP_543183
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,806 - 112,897,490 (+)NCBI
mRatBN7.29105,391,938 - 105,450,626 (+)NCBI
Rnor_6.09113,515,312 - 113,573,308 (+)NCBI
Rnor_5.09113,066,545 - 113,105,528 (+)NCBI
RGSC_v3.49104,572,704 - 104,611,601 (+)RGD
Celera9102,770,161 - 102,827,110 (+)RGD
Sequence:
RefSeq Acc Id: XM_039082977   ⟹   XP_038938905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,852,947 - 112,897,490 (+)NCBI
mRatBN7.29105,408,011 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082978   ⟹   XP_038938906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,869 - 112,897,490 (+)NCBI
mRatBN7.29105,391,956 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082979   ⟹   XP_038938907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,839,134 - 112,897,490 (+)NCBI
mRatBN7.29105,392,266 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082980   ⟹   XP_038938908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,758 - 112,897,490 (+)NCBI
mRatBN7.29105,391,884 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082981   ⟹   XP_038938909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,852,946 - 112,897,490 (+)NCBI
mRatBN7.29105,408,010 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082982   ⟹   XP_038938910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,836,950 - 112,897,490 (+)NCBI
mRatBN7.29105,391,271 - 105,450,626 (+)NCBI
RefSeq Acc Id: XM_039082983   ⟹   XP_038938911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,852,953 - 112,897,490 (+)NCBI
mRatBN7.29105,408,014 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082984   ⟹   XP_038938912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,388 - 112,897,490 (+)NCBI
mRatBN7.29105,391,522 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082985   ⟹   XP_038938913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,852,949 - 112,897,490 (+)NCBI
mRatBN7.29105,408,012 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_063266612   ⟹   XP_063122682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,557 - 112,879,255 (+)NCBI
RefSeq Acc Id: XR_010054561
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,555 - 112,889,173 (+)NCBI
RefSeq Acc Id: XR_010054562
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,838,556 - 112,887,500 (+)NCBI
RefSeq Acc Id: NP_543183   ⟸   NM_080907
- UniProtKB: Q8VI02 (UniProtKB/Swiss-Prot),   F1LRK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061977   ⟸   ENSRNOT00000066793
RefSeq Acc Id: XP_038938910   ⟸   XM_039082982
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACS7 (UniProtKB/TrEMBL),   A6JRC6 (UniProtKB/TrEMBL),   A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938912   ⟸   XM_039082984
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACS7 (UniProtKB/TrEMBL),   A6JRC6 (UniProtKB/TrEMBL),   A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938908   ⟸   XM_039082980
- Peptide Label: isoform X4
- UniProtKB: F1LRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938906   ⟸   XM_039082978
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938907   ⟸   XM_039082979
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938909   ⟸   XM_039082981
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938905   ⟸   XM_039082977
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938913   ⟸   XM_039082985
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACS7 (UniProtKB/TrEMBL),   A6JRC6 (UniProtKB/TrEMBL),   A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938911   ⟸   XM_039082983
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACS7 (UniProtKB/TrEMBL),   A6JRC6 (UniProtKB/TrEMBL),   A0A8I6AX20 (UniProtKB/TrEMBL),   A6JRC4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097964   ⟸   ENSRNOT00000111258
Ensembl Acc Id: ENSRNOP00000090902   ⟸   ENSRNOT00000104139
RefSeq Acc Id: XP_063122682   ⟸   XM_063266612
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000107554   ⟸   ENSRNOT00000129820
Ensembl Acc Id: ENSRNOP00000109427   ⟸   ENSRNOT00000139243

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VI02-F1-model_v2 AlphaFold Q8VI02 1-951 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619798 AgrOrtholog
BioCyc Gene G2FUF-26483 BioCyc
Ensembl Genes ENSRNOG00000013733 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000066793 ENTREZGENE
  ENSRNOT00000104139 ENTREZGENE
  ENSRNOT00000111258 ENTREZGENE
  ENSRNOT00000139243 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5598703 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  HEAT UniProtKB/Swiss-Prot
  HEAT_type_2 UniProtKB/Swiss-Prot
  PP2A_Regulatory_Subunit_A UniProtKB/Swiss-Prot
KEGG Report rno:140943 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72329 IMAGE-MGC_LOAD
NCBI Gene 140943 ENTREZGENE
PANTHER PTHR10648:SF8 UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT UniProtKB/Swiss-Prot
Pfam HEAT UniProtKB/Swiss-Prot
PhenoGen Ppp4r1 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013733 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A0A8I6ACS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AX20 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LF89_RAT UniProtKB/TrEMBL
  A0ABK0LYG7_RAT UniProtKB/TrEMBL
  A6JRC4 ENTREZGENE, UniProtKB/TrEMBL
  A6JRC5_RAT UniProtKB/TrEMBL
  A6JRC6 ENTREZGENE, UniProtKB/TrEMBL
  A6JRC7_RAT UniProtKB/TrEMBL
  A6JRC8_RAT UniProtKB/TrEMBL
  F1LRK9 ENTREZGENE, UniProtKB/TrEMBL
  PP4R1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Ppp4r1  protein phosphatase 4, regulatory subunit 1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Ppp4r1  protein phosphatase 4, regulatory subunit 1      Symbol and Name status set to provisional 70820 PROVISIONAL