Advanced Search (OLGA)

Gene: Unc13b (unc-13 homolog B) Rattus norvegicus

Analyze

Symbol:

Unc13b

Name:

unc-13 homolog B

RGD ID:

619723

Description:

Enables calmodulin binding activity and syntaxin-1 binding activity. Involved in several processes, including positive regulation of inhibitory postsynaptic potential; regulation of secretion by cell; and secretion by cell. Located in cytosol; synaptic membrane; and terminal bouton. Orthologous to human UNC13B (unc-13 homolog B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; allethrin; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Munc13-2; unc-13 homolog B (C. elegans); Unc13h2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UNC13B (unc-13 homolog B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB
Mus musculus (house mouse):	Unc13b (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UNC13B (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UNC13B (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Unc13b (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UNC13B (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UNC13B (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Unc13b (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Unc13b (unc-13 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UNC13A (unc-13 homolog A)	HGNC	OrthoDB
Homo sapiens (human):	KDELR1 (KDEL endoplasmic reticulum protein retention receptor 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UNC13B (unc-13 homolog B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Unc13b (unc-13 homolog B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	unc13bb (unc-13 homolog Bb (C. elegans))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	unc-13	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	unc-13	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100489443	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,084,809 - 62,299,884 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	62,084,819 - 62,299,884 (+)	Ensembl				GRCr8
mRatBN7.2	5	57,288,999 - 57,504,110 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,289,227 - 57,502,926 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	59,262,249 - 59,477,176 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,081,066 - 61,295,990 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,066,236 - 61,280,959 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	58,505,449 - 58,714,396 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,505,500 - 58,715,576 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	63,030,715 - 63,240,229 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	59,551,928 - 59,768,901 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	55,876,984 - 56,089,901 (+)	NCBI		Celera
RGSC_v3.1	5	59,716,002 - 59,769,080 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

diquat (ISO)

doxorubicin (ISO)

fenthion (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

graphite (EXP)

indometacin (ISO)

L-methionine (ISO)

lead(0) (ISO)

methoxyacetic acid (ISO)

Methylazoxymethanol acetate (EXP)

Monobutylphthalate (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pyrethrins (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosomal vesicle exocytosis (ISO)

cellular response to glucose stimulus (IMP,ISO)

chemical synaptic transmission (IEA,ISO,ISS)

dense core granule docking (ISO)

dense core granule priming (IBA,IEA,IGI)

exocytosis (IEA)

innervation (ISO)

modulation of chemical synaptic transmission (IEA)

negative regulation of synaptic plasticity (ISO)

neuromuscular junction development (ISO)

neuronal dense core vesicle exocytosis (ISO,ISS)

phagosome maturation (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of defense response to bacterium (ISO)

positive regulation of exocytosis (IMP)

positive regulation of inhibitory postsynaptic potential (IGI)

positive regulation of protein secretion (IMP,ISO)

positive regulation of synaptic vesicle priming (IGI)

regulation of presynaptic dense core granule exocytosis (IDA,IEP,IMP)

regulation of short-term neuronal synaptic plasticity (ISO)

regulation of synaptic vesicle priming (IEA)

spontaneous neurotransmitter secretion (IGI)

synaptic transmission, glutamatergic (IBA,ISO)

synaptic vesicle docking (IBA,ISO)

synaptic vesicle exocytosis (IEA,ISO)

synaptic vesicle priming (IBA,IEA,IMP,ISO,ISS)

Cellular Component

calyx of Held (ISO)

cytoplasm (IEA)

cytosol (IDA,ISO)

early phagosome (ISO)

glutamatergic synapse (ISO)

Golgi apparatus (ISO)

hippocampal mossy fiber to CA3 synapse (ISO)

membrane (IEA,ISO)

neuromuscular junction (IBA,ISO)

plasma membrane (IBA,IEA,IGI)

presynapse (IEA,ISO)

presynaptic active zone (ISO)

presynaptic membrane (IBA)

ribbon synapse (ISO)

synapse (IEA)

synaptic membrane (IDA)

synaptic vesicle membrane (IBA)

terminal bouton (IBA,IGI)

Molecular Function

calcium ion binding (IEA)

calmodulin binding (IBA,IDA,IEA)

diacylglycerol binding (IEA)

GTP-dependent protein binding (ISO)

metal ion binding (IEA)

phospholipid binding (IEA)

protein binding (IPI,ISO)

syntaxin binding (IDA)

syntaxin-1 binding (IBA,IDA,IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Differential expression of two novel Munc13 proteins in rat brain.	Augustin I, etal., Biochem J. 1999 Feb 1;337 ( Pt 3):363-71.
2.	Functional interaction of the active zone proteins Munc13-1 and RIM1 in synaptic vesicle priming.	Betz A, etal., Neuron 2001 Apr;30(1):183-96.
3.	Mammalian homologues of Caenorhabditis elegans unc-13 gene define novel family of C2-domain proteins.	Brose N, etal., J Biol Chem 1995 Oct 20;270(42):25273-80.
4.	RIM proteins activate vesicle priming by reversing autoinhibitory homodimerization of Munc13.	Deng L, etal., Neuron. 2011 Jan 27;69(2):317-31. doi: 10.1016/j.neuron.2011.01.005.
5.	Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry.	Dimova K, etal., Biochemistry. 2009 Jun 30;48(25):5908-21. doi: 10.1021/bi900300r.
6.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
8.	Rab34 and its effector munc13-2 constitute a new pathway modulating protein secretion in the cellular response to hyperglycemia.	Goldenberg NM and Silverman M, Am J Physiol Cell Physiol. 2009 Oct;297(4):C1053-8. doi: 10.1152/ajpcell.00286.2009. Epub 2009 Jul 29.
9.	CAPS and Munc13 utilize distinct PIP2-linked mechanisms to promote vesicle exocytosis.	Kabachinski G, etal., Mol Biol Cell. 2014 Feb;25(4):508-21. doi: 10.1091/mbc.E12-11-0829. Epub 2013 Dec 19.
10.	Nonconserved Ca(2+)/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity.	Lipstein N, etal., Mol Cell Biol. 2012 Nov;32(22):4628-41. doi: 10.1128/MCB.00933-12. Epub 2012 Sep 10.
11.	Identification of a Munc13-sensitive step in chromaffin cell large dense-core vesicle exocytosis.	Man KN, etal., Elife. 2015 Nov 17;4. pii: e10635. doi: 10.7554/eLife.10635.
12.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
13.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	The RAB3-RIM Pathway Is Essential for the Release of Neuromodulators.	Persoon CM, etal., Neuron. 2019 Dec 18;104(6):1065-1080.e12. doi: 10.1016/j.neuron.2019.09.015. Epub 2019 Oct 31.
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9607201	PMID:9697857	PMID:10233166	PMID:11792326	PMID:11832228	PMID:12070347	PMID:15294163	PMID:15988013	PMID:16138900	PMID:16704978	PMID:19558619	PMID:19700493
PMID:22248876	PMID:22674279	PMID:23197834	PMID:23229896	PMID:23658173	PMID:25374362	PMID:28264913	PMID:31936129

Genomics

Comparative Map Data

Unc13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,084,809 - 62,299,884 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	62,084,819 - 62,299,884 (+)	Ensembl				GRCr8
mRatBN7.2	5	57,288,999 - 57,504,110 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,289,227 - 57,502,926 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	59,262,249 - 59,477,176 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,081,066 - 61,295,990 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,066,236 - 61,280,959 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	58,505,449 - 58,714,396 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,505,500 - 58,715,576 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	63,030,715 - 63,240,229 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	59,551,928 - 59,768,901 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	55,876,984 - 56,089,901 (+)	NCBI		Celera
RGSC_v3.1	5	59,716,002 - 59,769,080 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

UNC13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,162,009 - 35,405,335 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,161,829 - 35,405,339 (+)	Ensembl			hg38	GRCh38
GRCh37	9	35,162,006 - 35,405,332 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,151,989 - 35,395,332 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	35,152,058 - 35,395,331	NCBI
Celera	9	35,093,995 - 35,337,320 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	35,117,517 - 35,359,509 (+)	NCBI		HuRef
CHM1_1	9	35,161,866 - 35,405,103 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,181,209 - 35,424,479 (+)	NCBI		T2T-CHM13v2.0

Unc13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,046,193 - 43,264,873 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	43,058,953 - 43,264,871 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	43,046,193 - 43,264,873 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,058,953 - 43,264,871 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	43,071,856 - 43,277,759 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	43,080,053 - 43,285,973 (+)	NCBI		MGSCv36	mm8
Celera	4	43,089,000 - 43,293,387 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.0	NCBI

UNC13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	89,184,307 - 89,431,211 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	89,190,246 - 89,437,207 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	35,011,350 - 35,255,148 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	35,817,353 - 36,059,895 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,817,353 - 36,059,894 (+)	Ensembl			panPan2	panpan1.1

UNC13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	51,707,968 - 51,941,148 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	51,708,302 - 51,940,955 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,276,777 - 50,508,946 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	52,773,675 - 53,006,449 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	52,773,727 - 53,006,464 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,388,636 - 51,551,200 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,302,640 - 51,534,710 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,004,520 - 52,236,429 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Unc13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	166,680,023 - 166,822,285 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936524	3,320,859 - 3,369,865 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UNC13B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	235,918,747 - 236,158,098 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	235,918,751 - 236,158,098 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	263,840,380 - 263,877,078 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UNC13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	45,230,661 - 45,461,934 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	45,230,659 - 45,461,339 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	42,341,062 - 42,574,219 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Unc13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624915	327,401 - 531,886 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624915	327,633 - 530,522 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Unc13b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	3,237,871 - 3,320,818 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Unc13b
1976 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	36
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000043216, ENSRNOT00000064755, ENSRNOT00000067281
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

AU046617

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	58,526,945 - 58,527,136	NCBI	Rnor6.0
Rnor_5.0	5	63,052,202 - 63,052,393	UniSTS	Rnor5.0
RGSC_v3.4	5	59,573,380 - 59,573,571	UniSTS	RGSC3.4
Celera	5	55,898,470 - 55,898,661	UniSTS
Cytogenetic Map	5	q22	UniSTS

PMC30485P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,498,429 - 57,498,861 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,709,900 - 58,710,331	NCBI	Rnor6.0
Rnor_5.0	5	63,235,733 - 63,236,164	UniSTS	Rnor5.0
RGSC_v3.4	5	59,764,405 - 59,764,836	UniSTS	RGSC3.4
Celera	5	56,085,402 - 56,085,833	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH130683

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,343,780 - 57,343,975 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,559,867 - 58,560,062	NCBI	Rnor6.0
Rnor_5.0	5	63,085,205 - 63,085,400	UniSTS	Rnor5.0
RGSC_v3.4	5	59,606,097 - 59,606,292	UniSTS	RGSC3.4
Celera	5	55,931,495 - 55,931,690	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH142716

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,313,837 - 57,314,019 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,530,056 - 58,530,237	NCBI	Rnor6.0
Rnor_5.0	5	63,055,313 - 63,055,494	UniSTS	Rnor5.0
RGSC_v3.4	5	59,576,491 - 59,576,672	UniSTS	RGSC3.4
Celera	5	55,901,581 - 55,901,762	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH134618

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,331,770 - 57,331,967 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	11,449,634 - 11,449,831 (-)	MAPPER	mRatBN7.2
mRatBN7.2	5	57,331,770 - 57,331,967 (-)	MAPPER	mRatBN7.2
mRatBN7.2	4	11,449,634 - 11,449,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,548,211 - 58,548,407	NCBI	Rnor6.0
Rnor_6.0	4	7,978,966 - 7,979,162	NCBI	Rnor6.0
Rnor_5.0	5	63,073,363 - 63,073,559	UniSTS	Rnor5.0
Rnor_5.0	4	7,986,868 - 7,987,064	UniSTS	Rnor5.0
RGSC_v3.4	5	59,594,398 - 59,594,594	UniSTS	RGSC3.4
RGSC_v3.4	4	6,824,971 - 6,825,167	UniSTS	RGSC3.4
Celera	4	7,061,262 - 7,061,458	UniSTS
Celera	5	55,919,497 - 55,919,693	UniSTS
Cytogenetic Map	5	q22	UniSTS

AU049544

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,372,392 - 57,372,662 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,586,092 - 58,586,359	NCBI	Rnor6.0
Rnor_5.0	5	63,112,160 - 63,112,427	UniSTS	Rnor5.0
RGSC_v3.4	5	59,635,604 - 59,635,871	UniSTS	RGSC3.4
Celera	5	55,959,562 - 55,959,833	UniSTS
Cytogenetic Map	5	q22	UniSTS

MARC_17336-17337:1021394418:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	62,294,606 - 62,295,231 (+)	Marker Load Pipeline
mRatBN7.2	5	57,498,832 - 57,499,457 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,710,303 - 58,710,927	NCBI	Rnor6.0
Rnor_5.0	5	63,236,136 - 63,236,760	UniSTS	Rnor5.0
RGSC_v3.4	5	59,764,808 - 59,765,432	UniSTS	RGSC3.4
Celera	5	56,085,805 - 56,086,429	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
18	13	79	198	91	90	59	107	59	6	413	228	21	177	100	109	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001042579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF159706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U24071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043216 ⟹ ENSRNOP00000046751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,084,819 - 62,299,877 (+)	Ensembl
mRatBN7.2 Ensembl	5	57,289,227 - 57,502,926 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,505,500 - 58,715,576 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000064755 ⟹ ENSRNOP00000058802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,084,819 - 62,299,877 (+)	Ensembl
mRatBN7.2 Ensembl	5	57,289,227 - 57,502,926 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,667,885 - 58,714,247 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000067281 ⟹ ENSRNOP00000058915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,133,006 - 62,299,884 (+)	Ensembl
mRatBN7.2 Ensembl	5	57,337,228 - 57,502,926 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,636,083 - 58,714,241 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078274 ⟹ ENSRNOP00000073250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,245,629 - 62,299,884 (+)	Ensembl
mRatBN7.2 Ensembl	5	57,449,853 - 57,502,926 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,661,049 - 58,714,396 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112338 ⟹ ENSRNOP00000087301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,084,819 - 62,299,877 (+)	Ensembl
mRatBN7.2 Ensembl	5	57,289,227 - 57,502,926 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147282 ⟹ ENSRNOP00000100898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	62,131,312 - 62,299,877 (+)	Ensembl

RefSeq Acc Id:

NM_001042579 ⟹ NP_001036044

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,085,037 - 62,299,884 (+)	NCBI
mRatBN7.2	5	57,289,227 - 57,504,110 (+)	NCBI
Rnor_6.0	5	58,505,449 - 58,714,396 (+)	NCBI
Rnor_5.0	5	63,030,715 - 63,240,229 (+)	NCBI
RGSC_v3.4	5	59,551,928 - 59,768,901 (+)	RGD
Celera	5	55,876,984 - 56,089,901 (+)	RGD

Sequence:

show sequence

GCCCTTGATCATTGCGGCCGCCACCTGCTGAGAGAAAAGAGGGAGCGGCCCGGCTCCGCGCGCG
GCTGAGGTGCGGCGGAGGCTGGTCCGCGCCTCAGCCATGTCGCTGCTCTGCGTGCGTGTTAAGA
GAGCCAAATTCCAGGGTTCACCAGATAAGTTTAACACATACGTGACCCTGAAAGTCCAGAACGT
GAAGAGCACAACTGTAGCAGTTCGTGGTGATCAGCCTTCCTGGGAGCAAGATTTCATGTTTGAG
ATCAGCCGTCTGGACCTGGGCCTAAGTGTGGAGGTGTGGAACAAAGGGCTGATATGGGACACAA
TGGTGGGGACCGTGTGGATCGCGCTGAAGACTATCCGCCAGTCGGATGAGGAAGGGCCTGGGGA
GTGGTCTACACTGGAGGCTGAGACATTAATGAAAAATGATGAGATCTGTGGAACTAAAAACCCA
ACTCCTCATAAAATCTTGCTTGGTACACGATTTGAGCTGCCTTTTGACATCCCAGAGGAGGAAG
CCAGATATTGGACCTACAAATTGGAACAAATAAATGCCTTGGCAGATGATAATGAGTATTCCAG
TCAAGAAGAAAGCCAGAGGAAGCTGTTGCCCACTGCTGCCGCCCAGTGTCGTCACTGGACCTAT
TTGGGCTGGGGAGAGCATCAGACCTTTGAAGACCCTGATAGTGCCGTTGATGACCGGGACAGTG
ACTATCGAAGTGAGACCAGCAATAGTGCCCCACCTCCTTATCACACGACTACCCAGCCCAACGC
GTCTGCACACCAGTTCCCTATGCCAGTGCCACTGCCACAGCAGCTATTTCTTCAGGGAAGTTCC
CGAGACTCCTGCAATGACTCTATGCAGAGTTATGACCTTGATTACCCAGAGCGTCGGGCCCTCA
GCCCCACTAGCAGTAGTAGGTATGGCTCCTCCTGTAATGTGAGTCGAGGAAGCTCTCTGCTGAG
TGAACTGGACCAGTATCATGAGCAAGACGATGATGGTCGGGAGAGGGACTCCATTCATTCTAGC
CATAGCTATGGCAGCCTCTCCAGAGATGGCCAGGCTGGCTTGGGAGAACAAGAGAAAGCCTTGG
AAGTGGCCTGTGAATCACAGAAGGAGAAAACAGGTGAATCCAAGGAGAGAGATGATGCCACAGT
CTGCCCTCCGTCAGACCTGATGCTGCACAAGGACCTCACCCTAGGACCCCAGGAGAGTTTTCCC
GAGGAGAAAGCATCGTCGCCCTTTACCCAGGCCAGAGCACACTGGTTCCGAGCGGTTACCAAGG
TCCGACTCCAGCTGCAGGAGATTTCAGATGATGGTGACCCCTCCTTGCCTCAGTGGCTCCCAGA
AGGGCCAGCGGGAGGGCTCTATGGCATCGACAGCATGCCAGATCTACGAAGAAAGAAGCCACTG
CCACTTGTCAGTGATCTGGCTATGTCACTGGTCCAGTCACGGAAAGCAGGGATTACTTCCGCTA
TGGCTACACGTACCTCTCTCAAGGATGAAGATCTGAAATCCCATGTGTATAAGAAAACTCTGCA
GGCCTTAATCTACCCCATCTCGTGCACCACGCCCCACAACTTTGAGGTCTGGTCTGCCACGACA
CCCACCTACTGCTATGAGTGTGAAGGCTTGCTCTGGGGCCTTGCCCGGCAAGGCATGCGCTGCA
GCGAGTGTGGCGTCAAGTGCCATGAGAAGTGCCAAGACCTGCTCAATGCCGATTGCCTACAGCG
GGCCGCTGAAAAGAGCTCTAAGCACGGAGCTGAGGACCGGACTCAGAACATTATCATGGCCATG
AAGGACCGTATGAAGATCCGAGAACGGAATAAACCAGAGATCTTTGAGGTTATCCGGGATGTGT
TCACAGTGAGCAAAGTTGCCCACGTGCAGCAGATGAAAACAGTAAAGCAGAGTGTCCTGGATGG
CACCTCCAAGTGGTCGGCCAAAATTACCATCACGGTGGTTTGTGCCCAGGGCCTACAAGCCAAA
GACAAGACAGGATCCAGTGACCCTTATGTGACTGTGCAAGTTGGGAAAACCAAGAAGCGCACTA
AGACCATTTTTGGAAATTTGAATCCTGTTTGGGAGGAGAAGTTCCATTTTGAGTGCCACAACTC
TTCCGATCGAATTAAGGTACGTGTGTGGGATGAGGATGATGACATCAAATCCAGAGTAAAGCAG
CGGCTGAAGCGAGAGTCGGATGATTTCCTTGGCCAAACTATCATTGAAGTTCGAACGCTGAGTG
GAGAGATGGATGTCTGGTATAATCTGGAGAAGAGAACAGACAAGTCAGCTGTCTCAGGGGCTAT
CCGACTGCAAATCAATGTGGAGATCAAGGGGGAGGAGAAGGTAGCCCCATACCATGTGCAATAC
ACATGTCTCCATGAGAATCTTTTCCATTACCTCACAGACATTCAGGGCAGTGGAGGAGTCTGGA
TCCCAGACGCTCGGGGGGACGATGCATGGAAGGTGTACTTTGACGAGACAGCCCAAGAAATTGT
GGATGAATTTGCCATGCGCTATGGCATCGAGTCCATATATCAGGCCATGACGCACTTTGCGTGT
TTGTCATCCAAGTACATGTGTCCTGGCGTACCAGCCGTGATGAGTACCTTACTGGCCAACATCA
ATGCGTATTATGCTCACACAACCGCCTCCACTAACGTCTCTGCATCTGACCGCTTTGCCGCCTC
CAACTTTGGTAAAGAAAGATTTGTAAAACTGCTGGACCAGCTACACAACTCACTGAGGATAGAC
CTGTCTACATACAGGAATAACTTTCCTGCTGGGAGCCCTGAGCGGCTCCAGGATTTAAAATCTA
CAGTGGACTTGCTGACCAGCATTACTTTCTTCAGGATGAAGGTGCAAGAACTTCAGAGCCCCCC
AAGAGCCAGCCAGGTGGTAAAGGACTGTGTGAAGGCCTGCTTGAACTCTACATATGAATACATC
TTCAACAACTGCCATGACCTCTACAGTCACCAATACCAGCTGCAGGAACAACCACTAGAGGAAC
CAGGGCCCAGCATTCGGAACTTGGATTTCTGGCCCAAACTTATCACACTGATTGTATCAATCAT
AGAGGAGGATAAGAATTCCTACACACCTGTTCTGAACCAGTTTCCTCAGGAGTTGAATGTAGGA
AAAGTCAGTGCAGAAGTGATGTGGCACCTGTTTGCTCAAGACATGAAATATGCACTGGAGGAAC
ATGAGAAAGACCGGCTGTGTAAGAGTGCTGACTACATGAACCTGCACTTCAAGGTGAAGTGGCT
CCACAATGAATATGTGCGGGAGCTGCCTGCCCTCCAGGGGCAGGTGCCTGAGTACCCAGCGTGG
TTTGAGCAGTTCGTGCTACAGTGGCTAGATGAAAATGAAGACGTGTCCCTGGAATTCCTTCGTG
GGGGCTTGGAACGAGATAAGAGAGATGGGTTCCAGCAAACATCGGAGCATGCCTTGTTTTCCTG
TTCTGTGGTGGACGTCTTTACACAACTCAACCAGAGCTTTGAGATCATCCGGAAATTGGAATGT
CCAGACCCCAGCATCCTTGCCCATTATATGAGAAGGTTTGCTAAGACCATCGGCAAAGTGCTGA
TACAGTATGCAGACATCTTATCAAAGAACTTCCCAGCTTACTGCACAAAGGAGAGACTGCCCTG
TATCCTGATGAACAACATGCAGCAACTGAGGGTCCAGCTGGAGAAAATGTTTGAGGCCATGGGA
GGCAAAGAGCTGGACTCTGAAGCTGCAGACAGTCTGAAGGAGCTGCAGGTGAAACTGAATACAG
TTCTGGATGAGCTCAGCATGGTGTTTGGAAACAGCTTCCAGGTGCGGATCGACGAGTGTGTTCG
ACAAATGGCTGACATCCTGGGCCAAGTACGGGGCACAGGGAATGCATCCCCTAACGCCAGAGCC
TCGGTGGCTCAGGATGCAGATAGTGTGCTGCGACCTCTCATGGATTTCCTGGATGGCAACCTCA
CACTGTTTGCCACTGTGTGTGAGAAGACAGTGCTGAAGCGAGTCCTGAAGGAGCTCTGGCGAGT
GGTGATGAACACCATGGAGCGGGTCATCGTCCTGCCCCCACTCATTGACCAGACAGGCACCCAG
CTGATCTTAACTGCTGCCAAGGAGCTGAGCCAGCTTTCCAAACTCAAGGACCACATGGTACGAG
AGGAAACACGGAATCTCACTCCAAAGCAGTGTGCTGTCCTCGACTTGGCCTTGGACACCGTCAA
GCAATACTTCCATGCAGGAGGCAATGGTCTGAAGAAAACCTTCCTGGAAAAGAGCCCAGACCTG
CAGTCTCTACGTTATGCCCTCTCTCTGTATACACAGACCACAGACACTCTCATCAAGACATTTG
TGCGCTCACAGACTGCCCAAGTACATGATGGGAAAGGTATTAGGTTTACTGCTAACGAGGACAT
TCGGCCAGAAAAGGGGGCTGGTGTGGACGACCCTGTGGGAGAAGTCTCTATTCAGGTGGACTTG
TTTACACATCCTGGCACTGGGGAGCATAAGGTCACAGTGAAAGTGGTAGCAGCCAATGATCTCA
AGTGGCAGACAGCAGGTATGTTCCGGCCTTTTGTGGAAGTGACCATGGTTGGCCCACACCAAAG
CGATAAGAAGAGGAAGTTCACAACCAAGTCTAAAAGTAACAGCTGGACTCCCAAGTACAACGAG
ACTTTTCATTTCCTCCTGGGAAATGAAGAGGGTCCCGAGGCCTATGAATTGCAGATATGCGTGA
AGGATTACTGCTTTGCCCGGGAGGATCGTGTGATAGGACTGGCAGTGATGCCCCTGAGGGATGT
GGCAGCTAAGGGCAGCTGTGCCTGCTGGTGCCCGTTGGGCCGGAAGATCCACATGGATGAGACA
GGCATGACCATTCTCCGGATTCTGTCTCAGAGGAGCAATGATGAGGTAGCCCGAGAGTTCGTGA
AGCTCAAGTCAGAGTCTCGATCCATAGAGGAAGGGAGCTGACCATCTCTGCCATCTTTGCCTTG
TGTGCCATCCAGACAGCACCCACTGCTCAGATCAGTCAGGGAGAGTTAGCTGTGTAGCCAGCTT
AGAGTCCTCGTAGTCAAAAAGCTGACTCTCCCAGTTAAGGATGACTAAGGAGAATCTTGGGGG

hide sequence

RefSeq Acc Id:

NM_022862 ⟹ NP_074053

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,245,629 - 62,299,884 (+)	NCBI
mRatBN7.2	5	57,449,853 - 57,504,110 (+)	NCBI
Rnor_6.0	5	58,661,049 - 58,714,396 (+)	NCBI
Rnor_5.0	5	63,030,715 - 63,240,229 (+)	NCBI
RGSC_v3.4	5	59,551,928 - 59,768,901 (+)	RGD
Celera	5	56,036,692 - 56,089,901 (+)	NCBI

Sequence:

show sequence

GAATTCCCTGAGAATAATAGCTCCTTGGTTCCGTTTGTTGCTTAGGCAGGCGGCTGTGCCATGG
CTCAGAAAGTTCATCCTGTGGCTTCTCTGTCAGTCTGAGGCGTGCTTCTGAGAGGACTACTGCT
TAAAGGCAGCAGCACTTGCATTCTAAAACTTGAGAATTTGTGGCTTTAATATTTTCTTCCCTTT
TCATTTCCTTAACCTTATTTTGGTTTCAGCACCAAGGATGAAAGCCAAGCCAGGATCCAGAGAC
ATGTGTCAGGTTTGAGGCCTATACATGAGGTCATTCCAGGCAGTACTGTGGCTAAACCTAAGCC
TTCAGTTAACAATAGTTGTTAAAAACCAACTCAAAAAAGAAAGGAAGGAAGAAGAAAAGAAAGA
AAGGGGACTAGGCTCTTCCAAGGCCATTTCTATTCAGCATCCCAGCAAGAAAAGAGGAAAAAGA
AAGAAGCAAAGAGCCGTCACCTCTCCTGAGGGGGAAAATGAAACGACTGTTGCGGGAGTCTGAG
GAAGAAATCATGCTGACACTGGGACCTTCATCCAGCCTCTCACCAGATCAGGTCAGGACAGAGA
CTGTGTGTATTGTCAAGGGCAAGTCCACAGGTCCTACTGGGTCCTTGCCAGAGGACAACTTCCC
ACCCCCTTGCTGTGAGTCAGCAGACTCCACCACTAGTGGAGAGAGAGATAGGAACCTGGCCCAA
CTTGGTAGCTTTGAGCAGCAAGCCAGTAGCCAACCTTCTCTGGCCTGCACTGCTTGTGCTTCAG
GGTCTGATTCTCGGGAACTCTCGCCTGCCAGCATAACAAGCTGTTCAGAGCCTTCAGAGAGAAA
CAAAGCCAGGCCCATATTCCCCAGAGGTCCTGGCCAAAGATGTAGGCATGAGCATCAGGAGCCT
CTGGGAGATGTAGTAGAATATATCATCAGAGAGCTGCAAGGAATCAGTCGTCTCCAGTCTGAGA
TTGCTGAGCTGCAACAGCACTTGAACCAAGTCCGGGGCTCTGTGGATGAAGTATCTAGCTGTGT
AGATTCAGTGCTGAGTGAAATAGAAGGCTTGCACGTGGGTAGCAGCTCCCTGGGCAAAGTACGC
CATGGGGAAAAGGCCCAGGAACTCCATGTAGAAAGATCCAGAGAGGAAGCTATTCTTTATTTGT
ATGGACTTCCTGAACATGATGGGGAAAGCACTGTGGAACTGGTAGATAACTTTCTAGCTAAGCA
CCTCTGTGTTAATGGCATGCAGTGCAACAGGTATGTCAGAGAGGCATACAGGGCAGGCACAGCT
CCTGCCCCCCGGCCCACTGTGGTGAAACTTGTCCACCCAGAGCACAGAGACCTCATCTTGCAAA
AATCCATCCTCTTGCAGAGTGTGGGGGTCAGGGTTGCTACCAGAGAGGAACCAGTCTGGCCAGA
AGGGTGTAAGAATCCCCCAAAGGAGTCTCTCTCATGCTTGCAACAATTTCAAGACCACAGTCGG
AACCATCAGGGTAAACCAGCTCTTCAGCTAGAAACAGGGAACAGAAGACAAATGTCGGGACCAC
ACCAGATGAGGACTCAGAATCAACATAGAGAACTCCAGGCTTCTGAGCATCAAGGGCTTAGTTT
CCTACCAAAGGATGGCTCAGCAAAACAGAGTGATGTGTCTAAGCTGCAGGATGAAGTAAAAGGA
ACATCAGGAGCTCCCCAGGTAATCAGTGATCCTTGTGGTGAACTTTCTCTCCTCCATCAACTTG
AGGGGTCTTCCCCAGTGTTAATCCCAAAAGAGGAAGATTGTGGAAAATTACAGATTTTCAAACA
GGACAGCCAAGAGCATAAGGCATGTAACGTGACAAAGCTACAAAGTGATTGCAACAATGCAATT
AAAGCCAGCAGTTGCCTTTCATTGTCTGGACCACTGAAAGCAGAGAAGGTAAACGCAGAGGACA
GGATGCTAGGCGGTGAAGATGGACTTGATATTCTGAGCCCAAAGCAGCTGGAGGACCTTTTGGC
AGACAAGTCTAGGAGGTTTGCGACTCTGAATCCTGACAGCGCAGTGGAGGAAGTGATCATAGGA
CCCGAGACTTTCAGTAACATGGTGCATATTGACCTGAATGAAGAAGAGACCTGTACTGCCCAGG
TCCTTAAGAATGTCTTTGATAAGTCCTCATGTGTTCTGGGTGGCTCCCAGGAGGATGAAGATGT
AGAAATTAAATTTCACACAACTAAGCTGAGTCGAGCGATCCACCACTTCCGTTTGGCTCTTCAG
GGGGTATTTCAGAAGCTGGAGAACAATGGGTCCATCAGTCCTGAGGACCTGGAAAGCAATGAGA
GTGGTTCCCAGTCAGAAAACAGTGATAGACTTCTTTGGACAGTAAGTTCAGGAGGTGCCCACGA
TTGTTCAGTGGAGAGTCCAGCAAGTCAGGGGAGTGAGAGCTTGCTCAGTGTGGTCTCTGGTGGA
GTAGGCATCTCTGTACAGGGTGATCAGACACCTCAAGCACCAAGTAACTTCTCTCTTGCTTCTA
ACAACTCACCTCTTACAAACTCATTGCTCAGTTTCCCTCTAGCCCCAGGTCTGGGAAACGAGAC
TTGTTCCAGGCCTGACTCTCCTAATCAAGGCAAACTGAGTTTAGAACAAGTATGTGCAGAGACC
ATTTACCTTAACAAATGCATCAACAATTTTAAAAACGTCCTAAGAGAGAAAAGACTGAGGCAGA
AAAAACTTTTGCAAGAGCTAGTACAGACGGCAAGTCATCTTTCAGTAGAAGACATCCCCTCAGA
AGGAAAGCGAGAAGCTCTTCAGATTTCAGATGATGGTGACCCCTCCTTGCCTCAGTGGCTCCCA
GAAGGGCCAGCGGGAGGGCTCTATGGCATCGACAGCATGCCAGATCTACGAAGAAAGAAGCCAC
TGCCACTTGTCAGTGATCTGGCTATGTCACTGGTCCAGTCACGGAAAGCAGGGATTACTTCCGC
TATGGCTACACGTACCTCTCTCAAGGATGAAGATCTGAAATCCCATGTGTATAAGAAAACTCTG
CAGGCCTTAATCTACCCCATCTCGTGCACCACGCCCCACAACTTTGAGGTCTGGTCTGCCACGA
CACCCACCTACTGCTATGAGTGTGAAGGCTTGCTCTGGGGCCTTGCCCGGCAAGGCATGCGCTG
CAGCGAGTGTGGCGTCAAGTGCCATGAGAAGTGCCAAGACCTGCTCAATGCCGATTGCCTACAG
CGGGCCGCTGAAAAGAGCTCTAAGCACGGAGCTGAGGACCGGACTCAGAACATTATCATGGCCA
TGAAGGACCGTATGAAGATCCGAGAACGGAATAAACCAGAGATCTTTGAGGTTATCCGGGATGT
GTTCACAGTGAGCAAAGTTGCCCACGTGCAGCAGATGAAAACAGTAAAGCAGAGTGTCCTGGAT
GGCACCTCCAAGTGGTCGGCCAAAATTACCATCACGGTGGTTTGTGCCCAGGGCCTACAAGCCA
AAGACAAGACAGGATCCAGTGACCCTTATGTGACTGTGCAAGTTGGGAAAACCAAGAAGCGCAC
TAAGACCATTTTTGGAAATTTGAATCCTGTTTGGGAGGAGAAGTTCCATTTTGAGTGCCACAAC
TCTTCCGATCGAATTAAGGTACGTGTGTGGGATGAGGATGATGACATCAAATCCAGAGTAAAGC
AGCGGCTGAAGCGAGAGTCGGATGATTTCCTTGGCCAAACTATCATTGAAGTTCGAACGCTGAG
TGGAGAGATGGATGTCTGGTATAATCTGGAGAAGAGAACAGACAAGTCAGCTGTCTCAGGGGCT
ATCCGACTGCAAATCAATGTGGAGATCAAGGGGGAGGAGAAGGTAGCCCCATACCATGTGCAAT
ACACATGTCTCCATGAGAATCTTTTCCATTACCTCACAGACATTCAGGGCAGTGGAGGAGTCTG
GATCCCAGACGCTCGGGGGGACGATGCATGGAAGGTGTACTTTGACGAGACAGCCCAAGAAATT
GTGGATGAATTTGCCATGCGCTATGGCATCGAGTCCATATATCAGGCCATGACGCACTTTGCGT
GTTTGTCATCCAAGTACATGTGTCCTGGCGTACCAGCCGTGATGAGTACCTTACTGGCCAACAT
CAATGCGTATTATGCTCACACAACCGCCTCCACTAACGTCTCTGCATCTGACCGCTTTGCCGCC
TCCAACTTTGGTAAAGAAAGATTTGTAAAACTGCTGGACCAGCTACACAACTCACTGAGGATAG
ACCTGTCTACATACAGGAATAACTTTCCTGCTGGGAGCCCTGAGCGGCTCCAGGATTTAAAATC
TACAGTGGACTTGCTGACCAGCATTACTTTCTTCAGGATGAAGGTGCAAGAACTTCAGAGCCCC
CCAAGAGCCAGCCAGGTGGTAAAGGACTGTGTGAAGGCCTGCTTGAACTCTACATATGAATACA
TCTTCAACAACTGCCATGACCTCTACAGTCACCAATACCAGCTGCAGGAACAACCACTAGAGGA
ACCAGGGCCCAGCATTCGGAACTTGGATTTCTGGCCCAAACTTATCACACTGATTGTATCAATC
ATAGAGGAGGATAAGAATTCCTACACACCTGTTCTGAACCAGTTTCCTCAGGAGTTGAATGTAG
GAAAAGTCAGTGCAGAAGTGATGTGGCACCTGTTTGCTCAAGACATGAAATATGCACTGGAGGA
ACATGAGAAAGACCGGCTGTGTAAGAGTGCTGACTACATGAACCTGCACTTCAAGGTGAAGTGG
CTCCACAATGAATATGTGCGGGAGCTGCCTGCCCTCCAGGGGCAGGTGCCTGAGTACCCAGCGT
GGTTTGAGCAGTTCGTGCTACAGTGGCTAGATGAAAATGAAGACGTGTCCCTGGAATTCCTTCG
TGGGGGCTTGGAACGAGATAAGAGAGATGGGTTCCAGCAAACATCGGAGCATGCCTTGTTTTCC
TGTTCTGTGGTGGACGTCTTTACACAACTCAACCAGAGCTTTGAGATCATCCGGAAATTGGAAT
GTCCAGACCCCAGCATCCTTGCCCATTATATGAGAAGGTTTGCTAAGACCATCGGCAAAGTGCT
GATACAGTATGCAGACATCTTATCAAAGAACTTCCCAGCTTACTGCACAAAGGAGAGACTGCCC
TGTATCCTGATGAACAACATGCAGCAACTGAGGGTCCAGCTGGAGAAAATGTTTGAGGCCATGG
GAGGCAAAGAGCTGGACTCTGAAGCTGCAGACAGTCTGAAGGAGCTGCAGGTGAAACTGAATAC
AGTTCTGGATGAGCTCAGCATGGTGTTTGGAAACAGCTTCCAGGTGCGGATCGACGAGTGTGTT
CGACAAATGGCTGACATCCTGGGCCAAGTACGGGGCACAGGGAATGCATCCCCTAACGCCAGAG
CCTCGGTGGCTCAGGATGCAGATAGTGTGCTGCGACCTCTCATGGATTTCCTGGATGGCAACCT
CACACTGTTTGCCACTGTGTGTGAGAAGACAGTGCTGAAGCGAGTCCTGAAGGAGCTCTGGCGA
GTGGTGATGAACACCATGGAGCGGGTCATCGTCCTGCCCCCACTCATTGACCAGACAGGCACCC
AGCTGATCTTAACTGCTGCCAAGGAGCTGAGCCAGCTTTCCAAACTCAAGGACCACATGGTACG
AGAGGAAACACGGAATCTCACTCCAAAGCAGTGTGCTGTCCTCGACTTGGCCTTGGACACCGTC
AAGCAATACTTCCATGCAGGAGGCAATGGTCTGAAGAAAACCTTCCTGGAAAAGAGCCCAGACC
TGCAGTCTCTACGTTATGCCCTCTCTCTGTATACACAGACCACAGACACTCTCATCAAGACATT
TGTGCGCTCACAGACTGCCCAAGTACATGATGGGAAAGGTATTAGGTTTACTGCTAACGAGGAC
ATTCGGCCAGAAAAGGGGGCTGGTGTGGACGACCCTGTGGGAGAAGTCTCTATTCAGGTGGACT
TGTTTACACATCCTGGCACTGGGGAGCATAAGGTCACAGTGAAAGTGGTAGCAGCCAATGATCT
CAAGTGGCAGACAGCAGGTATGTTCCGGCCTTTTGTGGAAGTGACCATGGTTGGCCCACACCAA
AGCGATAAGAAGAGGAAGTTCACAACCAAGTCTAAAAGTAACAGCTGGACTCCCAAGTACAACG
AGACTTTTCATTTCCTCCTGGGAAATGAAGAGGGTCCCGAGGCCTATGAATTGCAGATATGCGT
GAAGGATTACTGCTTTGCCCGGGAGGATCGTGTGATAGGACTGGCAGTGATGCCCCTGAGGGAT
GTGGCAGCTAAGGGCAGCTGTGCCTGCTGGTGCCCGTTGGGCCGGAAGATCCACATGGATGAGA
CAGGCATGACCATTCTCCGGATTCTGTCTCAGAGGAGCAATGATGAGGTAGCCCGAGAGTTCGT
GAAGCTCAAGTCAGAGTCTCGATCCATAGAGGAAGGGAGCTGACCATCTCTGCCATCTTTGCCT
TGTGTGCCATCCAGACAGCACCCACTGCTCAGATCAGTCAGGGAGAGTTAGCTGTGTAGCCAGC
TTAGAGTCCTCGTAGTCAAAAAGCTGACTCTCCCAGTTAAGGATGACTAAGGAGAATCTTGGGG
GGAATTC

hide sequence

RefSeq Acc Id:

XM_039110716 ⟹ XP_038966644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,245,859 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,450,086 - 57,502,777 (+)	NCBI

RefSeq Acc Id:

XM_039110717 ⟹ XP_038966645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,288,999 - 57,503,198 (+)	NCBI

RefSeq Acc Id:

XM_039110721 ⟹ XP_038966649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,288,999 - 57,502,777 (+)	NCBI

RefSeq Acc Id:

XM_039110722 ⟹ XP_038966650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,288,999 - 57,502,777 (+)	NCBI

RefSeq Acc Id:

XM_039110723 ⟹ XP_038966651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,288,999 - 57,502,777 (+)	NCBI

RefSeq Acc Id:

XM_039110724 ⟹ XP_038966652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI
mRatBN7.2	5	57,288,999 - 57,502,777 (+)	NCBI

RefSeq Acc Id:

XM_063288357 ⟹ XP_063144427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,243,806 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288358 ⟹ XP_063144428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,243,806 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288359 ⟹ XP_063144429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,245,859 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288360 ⟹ XP_063144430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,809 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288361 ⟹ XP_063144431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,220,092 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288363 ⟹ XP_063144433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,244,831 - 62,299,882 (+)	NCBI

RefSeq Acc Id:

XM_063288364 ⟹ XP_063144434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,084,815 - 62,299,882 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001036044	(Get FASTA)	NCBI Sequence Viewer
	NP_074053	(Get FASTA)	NCBI Sequence Viewer
	XP_038966644	(Get FASTA)	NCBI Sequence Viewer
	XP_038966645	(Get FASTA)	NCBI Sequence Viewer
	XP_038966649	(Get FASTA)	NCBI Sequence Viewer
	XP_038966650	(Get FASTA)	NCBI Sequence Viewer
	XP_038966651	(Get FASTA)	NCBI Sequence Viewer
	XP_038966652	(Get FASTA)	NCBI Sequence Viewer
	XP_063144427	(Get FASTA)	NCBI Sequence Viewer
	XP_063144428	(Get FASTA)	NCBI Sequence Viewer
	XP_063144429	(Get FASTA)	NCBI Sequence Viewer
	XP_063144430	(Get FASTA)	NCBI Sequence Viewer
	XP_063144431	(Get FASTA)	NCBI Sequence Viewer
	XP_063144433	(Get FASTA)	NCBI Sequence Viewer
	XP_063144434	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52267	(Get FASTA)	NCBI Sequence Viewer
	AAD41910	(Get FASTA)	NCBI Sequence Viewer
	EDL98728	(Get FASTA)	NCBI Sequence Viewer
	EDL98729	(Get FASTA)	NCBI Sequence Viewer
	EDL98730	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046751
	ENSRNOP00000058802
	ENSRNOP00000073250
	ENSRNOP00000087301
	ENSRNOP00000100898
GenBank Protein	Q62769	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_074053 ⟸ NM_022862

- Peptide Label:

isoform b

- Sequence:

show sequence

MKRLLRESEEEIMLTLGPSSSLSPDQVRTETVCIVKGKSTGPTGSLPEDNFPPPCCESADSTTS
GERDRNLAQLGSFEQQASSQPSLACTACASGSDSRELSPASITSCSEPSERNKARPIFPRGPGQ
RCRHEHQEPLGDVVEYIIRELQGISRLQSEIAELQQHLNQVRGSVDEVSSCVDSVLSEIEGLHV
GSSSLGKVRHGEKAQELHVERSREEAILYLYGLPEHDGESTVELVDNFLAKHLCVNGMQCNRYV
REAYRAGTAPAPRPTVVKLVHPEHRDLILQKSILLQSVGVRVATREEPVWPEGCKNPPKESLSC
LQQFQDHSRNHQGKPALQLETGNRRQMSGPHQMRTQNQHRELQASEHQGLSFLPKDGSAKQSDV
SKLQDEVKGTSGAPQVISDPCGELSLLHQLEGSSPVLIPKEEDCGKLQIFKQDSQEHKACNVTK
LQSDCNNAIKASSCLSLSGPLKAEKVNAEDRMLGGEDGLDILSPKQLEDLLADKSRRFATLNPD
SAVEEVIIGPETFSNMVHIDLNEEETCTAQVLKNVFDKSSCVLGGSQEDEDVEIKFHTTKLSRA
IHHFRLALQGVFQKLENNGSISPEDLESNESGSQSENSDRLLWTVSSGGAHDCSVESPASQGSE
SLLSVVSGGVGISVQGDQTPQAPSNFSLASNNSPLTNSLLSFPLAPGLGNETCSRPDSPNQGKL
SLEQVCAETIYLNKCINNFKNVLREKRLRQKKLLQELVQTASHLSVEDIPSEGKREALQISDDG
DPSLPQWLPEGPAGGLYGIDSMPDLRRKKPLPLVSDLAMSLVQSRKAGITSAMATRTSLKDEDL
KSHVYKKTLQALIYPISCTTPHNFEVWSATTPTYCYECEGLLWGLARQGMRCSECGVKCHEKCQ
DLLNADCLQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRERNKPEIFEVIRDVFTVSKVAHVQQM
KTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWE
EKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMDVWYNLEKR
TDKSAVSGAIRLQINVEIKGEEKVAPYHVQYTCLHENLFHYLTDIQGSGGVWIPDARGDDAWKV
YFDETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYMCPGVPAVMSTLLANINAYYAHTTASTN
VSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGSPERLQDLKSTVDLLTSITFFR
MKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHDLYSHQYQLQEQPLEEPGPSIRNLDFWP
KLITLIVSIIEEDKNSYTPVLNQFPQELNVGKVSAEVMWHLFAQDMKYALEEHEKDRLCKSADY
MNLHFKVKWLHNEYVRELPALQGQVPEYPAWFEQFVLQWLDENEDVSLEFLRGGLERDKRDGFQ
QTSEHALFSCSVVDVFTQLNQSFEIIRKLECPDPSILAHYMRRFAKTIGKVLIQYADILSKNFP
AYCTKERLPCILMNNMQQLRVQLEKMFEAMGGKELDSEAADSLKELQVKLNTVLDELSMVFGNS
FQVRIDECVRQMADILGQVRGTGNASPNARASVAQDADSVLRPLMDFLDGNLTLFATVCEKTVL
KRVLKELWRVVMNTMERVIVLPPLIDQTGTQLILTAAKELSQLSKLKDHMVREETRNLTPKQCA
VLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKTFVRSQTAQVHDGK
GIRFTANEDIRPEKGAGVDDPVGEVSIQVDLFTHPGTGEHKVTVKVVAANDLKWQTAGMFRPFV
EVTMVGPHQSDKKRKFTTKSKSNSWTPKYNETFHFLLGNEEGPEAYELQICVKDYCFAREDRVI
GLAVMPLRDVAAKGSCACWCPLGRKIHMDETGMTILRILSQRSNDEVAREFVKLKSESRSIEEG
S

hide sequence

RefSeq Acc Id:	NP_001036044 ⟸ NM_001042579
- Peptide Label:	isoform u
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSLLCVRVKRAKFQGSPDKFNTYVTLKVQNVKSTTVAVRGDQPSWEQDFMFEISRLDLGLSVEV WNKGLIWDTMVGTVWIALKTIRQSDEEGPGEWSTLEAETLMKNDEICGTKNPTPHKILLGTRFE LPFDIPEEEARYWTYKLEQINALADDNEYSSQEESQRKLLPTAAAQCRHWTYLGWGEHQTFEDP DSAVDDRDSDYRSETSNSAPPPYHTTTQPNASAHQFPMPVPLPQQLFLQGSSRDSCNDSMQSYD LDYPERRALSPTSSSRYGSSCNVSRGSSLLSELDQYHEQDDDGRERDSIHSSHSYGSLSRDGQA GLGEQEKALEVACESQKEKTGESKERDDATVCPPSDLMLHKDLTLGPQESFPEEKASSPFTQAR AHWFRAVTKVRLQLQEISDDGDPSLPQWLPEGPAGGLYGIDSMPDLRRKKPLPLVSDLAMSLVQ SRKAGITSAMATRTSLKDEDLKSHVYKKTLQALIYPISCTTPHNFEVWSATTPTYCYECEGLLW GLARQGMRCSECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRERNKP EIFEVIRDVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTV QVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQ TIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLQINVEIKGEEKVAPYHVQYTCLHENLFHYLT DIQGSGGVWIPDARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYMCPGVPA VMSTLLANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGS PERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHDLYSHQY QLQEQPLEEPGPSIRNLDFWPKLITLIVSIIEEDKNSYTPVLNQFPQELNVGKVSAEVMWHLFA QDMKYALEEHEKDRLCKSADYMNLHFKVKWLHNEYVRELPALQGQVPEYPAWFEQFVLQWLDEN EDVSLEFLRGGLERDKRDGFQQTSEHALFSCSVVDVFTQLNQSFEIIRKLECPDPSILAHYMRR FAKTIGKVLIQYADILSKNFPAYCTKERLPCILMNNMQQLRVQLEKMFEAMGGKELDSEAADSL KELQVKLNTVLDELSMVFGNSFQVRIDECVRQMADILGQVRGTGNASPNARASVAQDADSVLRP LMDFLDGNLTLFATVCEKTVLKRVLKELWRVVMNTMERVIVLPPLIDQTGTQLILTAAKELSQL SKLKDHMVREETRNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQ TTDTLIKTFVRSQTAQVHDGKGIRFTANEDIRPEKGAGVDDPVGEVSIQVDLFTHPGTGEHKVT VKVVAANDLKWQTAGMFRPFVEVTMVGPHQSDKKRKFTTKSKSNSWTPKYNETFHFLLGNEEGP EAYELQICVKDYCFAREDRVIGLAVMPLRDVAAKGSCACWCPLGRKIHMDETGMTILRILSQRS NDEVAREFVKLKSESRSIEEGS hide sequence

Ensembl Acc Id:

ENSRNOP00000058915 ⟸ ENSRNOT00000067281

Ensembl Acc Id:

ENSRNOP00000046751 ⟸ ENSRNOT00000043216

Ensembl Acc Id:

ENSRNOP00000073250 ⟸ ENSRNOT00000078274

Ensembl Acc Id:

ENSRNOP00000058802 ⟸ ENSRNOT00000064755

RefSeq Acc Id:	XP_038966645 ⟸ XM_039110717
- Peptide Label:	isoform X4
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot), A6IJ08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966650 ⟸ XM_039110722
- Peptide Label:	isoform X6
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot), F1LXM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966651 ⟸ XM_039110723
- Peptide Label:	isoform X7
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038966649 ⟸ XM_039110721
- Peptide Label:	isoform X5
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot), D3Z9Y2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966652 ⟸ XM_039110724
- Peptide Label:	isoform X8
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot), A6IJ09 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966644 ⟸ XM_039110716
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000087301 ⟸ ENSRNOT00000112338

RefSeq Acc Id:	XP_063144430 ⟸ XM_063288360
- Peptide Label:	isoform X9
- UniProtKB:	Q9WV40 (UniProtKB/Swiss-Prot), Q62769 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144434 ⟸ XM_063288364
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6AGA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144431 ⟸ XM_063288361
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063144428 ⟸ XM_063288358
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K511 (UniProtKB/TrEMBL), A6IJ10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144427 ⟸ XM_063288357
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K511 (UniProtKB/TrEMBL), A6IJ10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144433 ⟸ XM_063288363
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063144429 ⟸ XM_063288359
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000100898 ⟸ ENSRNOT00000147282

Protein Domains

C2 MHD1 MHD2 Phorbol-ester/DAG-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62769-F1-model_v2	AlphaFold	Q62769	1-1622	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693670

Promoter ID:

EPDNEW_R4195

Type:

single initiation site

Name:

Unc13b_1

Description:

unc-13 homolog B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	58,505,484 - 58,505,544	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619723	AgrOrtholog
BioCyc Gene	G2FUF-41522	BioCyc
Ensembl Genes	ENSRNOG00000008237	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000043216	ENTREZGENE
	ENSRNOT00000064755	ENTREZGENE
	ENSRNOT00000078274	ENTREZGENE
	ENSRNOT00000112338	ENTREZGENE
	ENSRNOT00000147282	ENTREZGENE
Gene3D-CATH	1.10.357.50	UniProtKB/Swiss-Prot
	1.20.58.1100	UniProtKB/Swiss-Prot
	2.60.40.150	UniProtKB/Swiss-Prot
	3.30.60.20	UniProtKB/Swiss-Prot
InterPro	C1-like_sf	UniProtKB/Swiss-Prot
	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	CAPS_dom	UniProtKB/Swiss-Prot
	Munc13_1	UniProtKB/Swiss-Prot
	Munc13_dom-2	UniProtKB/Swiss-Prot
	PE/DAG-bd	UniProtKB/Swiss-Prot
	Unc-13	UniProtKB/Swiss-Prot
	Unc-13_C2B	UniProtKB/Swiss-Prot
KEGG Report	rno:64830	UniProtKB/Swiss-Prot
NCBI Gene	64830	ENTREZGENE
PANTHER	PROTEIN UNC-13 HOMOLOG B	UniProtKB/Swiss-Prot
	PTHR10480	UniProtKB/Swiss-Prot
Pfam	C1_1	UniProtKB/Swiss-Prot
	DUF1041	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Unc13b	PhenoGen
PRINTS	C2DOMAIN	UniProtKB/Swiss-Prot
PROSITE	MHD1	UniProtKB/Swiss-Prot
	MHD2	UniProtKB/Swiss-Prot
	PS50004	UniProtKB/Swiss-Prot
	ZF_DAG_PE_1	UniProtKB/Swiss-Prot
	ZF_DAG_PE_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008237	RatGTEx
SMART	DUF1041	UniProtKB/Swiss-Prot
	SM00109	UniProtKB/Swiss-Prot
	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
	SSF57889	UniProtKB/Swiss-Prot
UniProt	A0A0G2K511	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGA8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LCQ1_RAT	UniProtKB/TrEMBL
	A6IJ08	ENTREZGENE, UniProtKB/TrEMBL
	A6IJ09	ENTREZGENE, UniProtKB/TrEMBL
	A6IJ10	ENTREZGENE, UniProtKB/TrEMBL
	D3Z9Y2	ENTREZGENE, UniProtKB/TrEMBL
	F1LTC1_RAT	UniProtKB/TrEMBL
	F1LXM4	ENTREZGENE, UniProtKB/TrEMBL
	Q62769	ENTREZGENE
	Q9WV40	ENTREZGENE
	UN13B_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q9WV40	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-29	Unc13b	unc-13 homolog B	Unc13b	unc-13 homolog B (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Unc13b	unc-13 homolog B (C. elegans)	Unc13h2	Munc13-2 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Unc13h2	Munc13-2 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message