Psmb5 (proteasome 20S subunit beta 5) - Rat Genome Database

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Gene: Psmb5 (proteasome 20S subunit beta 5) Rattus norvegicus
Analyze
Symbol: Psmb5
Name: proteasome 20S subunit beta 5
RGD ID: 61879
Description: Predicted to enable endopeptidase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within proteolysis and response to oxidative stress. Predicted to be located in centrosome and nucleoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB5 (proteasome 20S subunit beta 5); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: macropain epsilon chain; multicatalytic endopeptidase complex epsilon chain; proteasome (prosome, macropain) subunit, beta type 5; proteasome beta 5 subunit; proteasome beta type subunit 5; proteasome chain 6; proteasome epsilon chain; proteasome subunit beta 5; proteasome subunit beta type-5; proteasome subunit X
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,042,784 - 32,047,379 (-)NCBIGRCr8
mRatBN7.21528,072,772 - 28,077,367 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,072,781 - 28,077,440 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,911,955 - 29,916,437 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,059,168 - 31,063,650 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,308,790 - 29,313,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,259,039 - 33,263,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,259,043 - 33,263,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,143,058 - 37,147,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,689,859 - 32,694,364 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,705,562 - 32,710,051 (-)NCBI
Celera1527,651,286 - 27,655,779 (-)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
astemizole  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bortezomib  (EXP,ISO)
bromobenzene  (EXP)
butane-2,3-dione  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP,ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clozapine  (ISO)
Cuprizon  (ISO)
cypermethrin  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
furan  (EXP)
glucose  (ISO)
glyphosate  (ISO)
heparin  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
metam  (ISO)
methapyrilene  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
Pyridostigmine bromide  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
ritonavir  (EXP)
rotenone  (ISO)
sibutramine  (ISO)
sodium arsenite  (ISO)
stattic  (ISO)
sulindac  (EXP)
tamoxifen  (EXP,ISO)
Tanshinone I  (ISO)
theophylline  (EXP)
trichloroethene  (EXP)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2335214   PMID:8889548   PMID:15198663   PMID:16857966   PMID:17323924   PMID:17540904   PMID:19056867   PMID:20498273   PMID:21059646   PMID:21630459   PMID:22793692   PMID:22871113  
PMID:23376485   PMID:25931508   PMID:30361391  


Genomics

Comparative Map Data
Psmb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,042,784 - 32,047,379 (-)NCBIGRCr8
mRatBN7.21528,072,772 - 28,077,367 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,072,781 - 28,077,440 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,911,955 - 29,916,437 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,059,168 - 31,063,650 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,308,790 - 29,313,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,259,039 - 33,263,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,259,043 - 33,263,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,143,058 - 37,147,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,689,859 - 32,694,364 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,705,562 - 32,710,051 (-)NCBI
Celera1527,651,286 - 27,655,779 (-)NCBICelera
Cytogenetic Map15p13NCBI
PSMB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,025,851 - 23,035,220 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,016,543 - 23,035,230 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,495,060 - 23,504,429 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,564,900 - 22,573,949 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,564,899 - 22,573,949NCBI
Celera143,357,950 - 3,367,323 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,612,363 - 3,621,723 (-)NCBIHuRef
CHM1_11423,493,694 - 23,503,063 (-)NCBICHM1_1
T2T-CHM13v2.01417,226,471 - 17,235,840 (-)NCBIT2T-CHM13v2.0
Psmb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,851,577 - 54,855,452 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,851,576 - 54,855,479 (-)EnsemblGRCm39 Ensembl
GRCm381454,614,120 - 54,617,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,614,119 - 54,618,022 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,232,957 - 55,236,832 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,568,325 - 53,572,200 (-)NCBIMGSCv36mm8
Celera1452,402,497 - 52,406,386 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.86NCBI
Psmb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,268,980 - 37,279,937 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,269,319 - 37,278,957 (+)NCBIChiLan1.0ChiLan1.0
PSMB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,458,581 - 24,467,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,675,069 - 23,684,471 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,845,951 - 3,855,335 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,943,432 - 21,952,169 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,943,432 - 21,952,169 (-)Ensemblpanpan1.1panPan2
PSMB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,344,157 - 3,349,921 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,344,233 - 3,349,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,292,754 - 3,298,523 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,452,136 - 3,457,902 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,452,139 - 3,457,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,143,540 - 3,149,316 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,204,769 - 3,210,546 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,466,833 - 3,472,610 (-)NCBIUU_Cfam_GSD_1.0
Psmb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,095,360 - 35,103,510 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,285,482 - 1,295,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,285,488 - 1,293,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1776,014,576 - 76,021,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,329,736 - 81,337,082 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,394,820 - 23,403,953 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,390,401 - 23,403,658 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605923,013,024 - 23,022,186 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,505,725 - 9,513,034 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,506,119 - 9,513,034 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psmb5
60 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000018005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
RH128069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,072,795 - 28,072,995 (+)MAPPERmRatBN7.2
Rnor_6.01533,259,063 - 33,259,262NCBIRnor6.0
Rnor_5.01537,143,082 - 37,143,281UniSTSRnor5.0
RGSC_v3.41532,689,883 - 32,690,082UniSTSRGSC3.4
Celera1527,651,310 - 27,651,509UniSTS
Cytogenetic Map15p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000018005   ⟹   ENSRNOP00000018005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,072,781 - 28,077,440 (-)Ensembl
Rnor_6.0 Ensembl1533,259,043 - 33,263,659 (-)Ensembl
RefSeq Acc Id: NM_001105727   ⟹   NP_001099197
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,042,784 - 32,047,379 (-)NCBI
mRatBN7.21528,072,772 - 28,077,367 (-)NCBI
Rnor_6.01533,259,039 - 33,263,634 (-)NCBI
Rnor_5.01537,143,058 - 37,147,105 (-)NCBI
RGSC_v3.41532,689,859 - 32,694,364 (-)RGD
Celera1527,651,286 - 27,655,779 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099197 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14180 (Get FASTA)   NCBI Sequence Viewer  
  EDM14181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018005
  ENSRNOP00000018005.4
GenBank Protein P28075 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001099197   ⟸   NM_001105727
- UniProtKB: P28075 (UniProtKB/Swiss-Prot),   G3V7Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018005   ⟸   ENSRNOT00000018005

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P28075-F1-model_v2 AlphaFold P28075 1-263 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699656
Promoter ID:EPDNEW_R10179
Type:multiple initiation site
Name:Psmb5_1
Description:proteasome subunit beta 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01533,263,646 - 33,263,706EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61879 AgrOrtholog
BioCyc Gene G2FUF-13792 BioCyc
Ensembl Genes ENSRNOG00000013386 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018005 ENTREZGENE
  ENSRNOT00000018005.8 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29425 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 29425 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psmb5 PhenoGen
PRINTS PROTEASOME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013386 RatGTEx
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6KGV2_RAT UniProtKB/TrEMBL
  G3V7Q6 ENTREZGENE, UniProtKB/TrEMBL
  P28075 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psmb5  proteasome 20S subunit beta 5  Psmb5  proteasome subunit beta 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psmb5  proteasome subunit beta 5  Psmb5  proteasome (prosome, macropain) subunit, beta type 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Psmb5  proteasome (prosome, macropain) subunit, beta type 5      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference