Psma7 (proteasome 20S subunit alpha 7) - Rat Genome Database

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Gene: Psma7 (proteasome 20S subunit alpha 7) Rattus norvegicus
Analyze
Symbol: Psma7
Name: proteasome 20S subunit alpha 7
RGD ID: 61851
Description: Predicted to enable identical protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in postsynapse. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMA7 (proteasome 20S subunit alpha 7); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2-nitrofluorene; 4,4'-sulfonyldiphenol; 4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC156537; proteasome (prosome, macropain) subunit, alpha type 7; proteasome subunit alpha 7; proteasome subunit alpha type-7; proteasome subunit RC6-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Celera3165,436,256 - 165,442,444 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-nitrofluorene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
C60 fullerene  (EXP)
chlorpyrifos  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
hypochlorous acid  (ISO)
inulin  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
ozone  (ISO)
patulin  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tanespimycin  (ISO)
tetrachloromethane  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The proteasome alpha-subunit XAPC7 interacts specifically with Rab7 and late endosomes. Dong J, etal., J Biol Chem 2004 May 14;279(20):21334-42. Epub 2004 Mar 2.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Molecular cloning of two types of cDNA encoding subunit RC6-I of rat proteasomes. Ni R, etal., Biochim Biophys Acta 1995 Oct 17;1264(1):45-52.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12947022   PMID:15225636   PMID:15277470   PMID:16810255   PMID:16857966   PMID:17323924   PMID:17948026   PMID:20458337   PMID:20498273   PMID:21630459   PMID:22793692  
PMID:23376485   PMID:23533145   PMID:30133132   PMID:30361391  


Genomics

Comparative Map Data
Psma7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Celera3165,436,256 - 165,442,444 (+)NCBICelera
Cytogenetic Map3q43NCBI
PSMA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,136,733 - 62,143,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,136,733 - 62,143,440 (-)EnsemblGRCh38hg38GRCh38
GRCh372060,711,789 - 60,718,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,145,186 - 60,151,869 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,145,185 - 60,151,869NCBI
Celera2057,446,966 - 57,453,645 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,489,262 - 57,493,481 (-)NCBIHuRef
CHM1_12060,612,850 - 60,619,583 (-)NCBICHM1_1
T2T-CHM13v2.02063,927,604 - 63,934,261 (-)NCBIT2T-CHM13v2.0
Psma7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,678,160 - 179,684,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,678,167 - 179,684,226 (-)EnsemblGRCm39 Ensembl
GRCm382180,036,367 - 180,042,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,036,374 - 180,042,433 (-)EnsemblGRCm38mm10GRCm38
MGSCv372179,771,081 - 179,777,107 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362179,965,784 - 179,971,810 (-)NCBIMGSCv36mm8
Celera2184,120,963 - 184,127,008 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.55NCBI
Psma7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBIChiLan1.0ChiLan1.0
PSMA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,918,126 - 67,924,848 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12067,911,241 - 67,918,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,502,446 - 58,509,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12059,822,545 - 59,826,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,822,545 - 59,826,802 (-)Ensemblpanpan1.1panPan2
PSMA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,182,344 - 46,186,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,182,420 - 46,186,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,419,604 - 45,424,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,039,071 - 47,044,386 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,039,078 - 47,044,368 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,140,666 - 46,145,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,263,612 - 46,268,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,017,870 - 47,023,195 (-)NCBIUU_Cfam_GSD_1.0
Psma7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,355,315 - 194,360,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365149,806,624 - 9,813,723 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365149,808,966 - 9,819,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,566,373 - 61,572,438 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,566,373 - 61,571,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,076,205 - 69,079,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.122,094,331 - 2,101,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl22,094,455 - 2,100,936 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605050,044,223 - 50,050,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,011,606 - 28,017,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,011,606 - 28,017,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psma7
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:125
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000011724
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

Markers in Region
RH136620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,137,341 - 167,137,920 (+)MAPPERmRatBN7.2
Rnor_6.03175,420,105 - 175,420,683NCBIRnor6.0
Rnor_5.03181,698,000 - 181,698,578UniSTSRnor5.0
RGSC_v3.43169,100,870 - 169,101,448UniSTSRGSC3.4
Celera3165,441,803 - 165,442,381UniSTS
Cytogenetic Map3q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000082686   ⟹   ENSRNOP00000071611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095041   ⟹   ENSRNOP00000078026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,720 - 167,143,650 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106991   ⟹   ENSRNOP00000087849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116159   ⟹   ENSRNOP00000097117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
RefSeq Acc Id: NM_001008217   ⟹   NP_001008218
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,903 - 187,521,246 (-)NCBI
mRatBN7.23167,137,279 - 167,143,626 (-)NCBI
Rnor_6.03175,420,042 - 175,426,384 (-)NCBI
Rnor_5.03181,692,298 - 181,698,641 (+)NCBI
RGSC_v3.43169,100,807 - 169,107,149 (-)RGD
Celera3165,436,256 - 165,442,444 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283532   ⟹   XP_063139602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,901 - 187,521,289 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI27467 (Get FASTA)   NCBI Sequence Viewer  
  EDL88834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071611
  ENSRNOP00000071611.2
  ENSRNOP00000078026.1
  ENSRNOP00000087849.1
  ENSRNOP00000097117.1
GenBank Protein P48004 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001008218   ⟸   NM_001008217
- UniProtKB: A0A0G2K0W9 (UniProtKB/TrEMBL),   A6KMC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071611   ⟸   ENSRNOT00000082686
RefSeq Acc Id: ENSRNOP00000097117   ⟸   ENSRNOT00000116159
RefSeq Acc Id: ENSRNOP00000078026   ⟸   ENSRNOT00000095041
RefSeq Acc Id: ENSRNOP00000087849   ⟸   ENSRNOT00000106991
RefSeq Acc Id: XP_063139602   ⟸   XM_063283532
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A6N6 (UniProtKB/TrEMBL)
Protein Domains
Proteasome alpha-type subunits

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P48004-F1-model_v2 AlphaFold P48004 1-254 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692728
Promoter ID:EPDNEW_R3253
Type:initiation region
Name:Psma7_1
Description:proteasome subunit alpha 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03175,426,376 - 175,426,436EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61851 AgrOrtholog
BioCyc Gene G2FUF-46373 BioCyc
Ensembl Genes ENSRNOG00000056853 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082686 ENTREZGENE
  ENSRNOT00000082686.2 UniProtKB/TrEMBL
  ENSRNOT00000095041.1 UniProtKB/TrEMBL
  ENSRNOT00000106991.1 UniProtKB/TrEMBL
  ENSRNOT00000116159.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7381383 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29674 UniProtKB/TrEMBL
MGC_CLONE MGC:156537 IMAGE-MGC_LOAD
NCBI Gene 29674 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11599:SF40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psma7 PhenoGen
PROSITE PROTEASOME_ALPHA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056853 RatGTEx
SMART Proteasome_A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0W9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y830_RAT UniProtKB/TrEMBL
  A0A8I6A6N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASC7_RAT UniProtKB/TrEMBL
  A0JPK2_RAT UniProtKB/TrEMBL
  A6KMC7 ENTREZGENE, UniProtKB/TrEMBL
  P48004 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psma7  proteasome 20S subunit alpha 7  Psma7  proteasome subunit alpha 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psma7  proteasome subunit alpha 7  Psma7  proteasome (prosome, macropain) subunit, alpha type 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Psma7  proteasome (prosome, macropain) subunit, alpha type 7      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference