Psma7 (proteasome 20S subunit alpha 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Psma7 (proteasome 20S subunit alpha 7) Rattus norvegicus
Analyze
Symbol: Psma7
Name: proteasome 20S subunit alpha 7
RGD ID: 61851
Description: Predicted to enable identical protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMA7 (proteasome 20S subunit alpha 7); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2-nitrofluorene; 4,4'-sulfonyldiphenol; 4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-4; MGC156537; proteasome (prosome, macropain) subunit, alpha type 7; proteasome subunit alpha 7; proteasome subunit alpha type-7; proteasome subunit alpha-4; proteasome subunit RC6-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Celera3165,436,256 - 165,442,444 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 109 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Rat(-)-epigallocatechin 3-gallate increases expressionISOPSMA7 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of PSMA7 proteinCTDPMID:31195006
Psma7Rat(1->4)-beta-D-glucan multiple interactionsISOPsma7 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PSMA7 mRNACTDPMID:36331819
Psma7Rat1,2-dimethylhydrazine multiple interactionsISOPsma7 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PSMA7 mRNACTDPMID:22206623
Psma7Rat17alpha-ethynylestradiol multiple interactionsISOPsma7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PSMA7 mRNACTDPMID:17942748
Psma7Rat17beta-estradiol increases expressionISOPsma7 (Mus musculus)6480464Estradiol results in increased expression of PSMA7 mRNACTDPMID:39298647
Psma7Rat1H-pyrazole increases expressionISOPsma7 (Mus musculus)6480464pyrazole results in increased expression of PSMA7 mRNACTDPMID:17945193
Psma7Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOPsma7 (Mus musculus)64804642 more ...CTDPMID:30294300
Psma7Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPsma7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PSMA7 mRNACTDPMID:17942748
Psma7Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPsma7 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PSMA7 mRNACTDPMID:21570461
Psma7Rat2-nitrofluorene increases expressionEXP 64804642-nitrofluorene results in increased expression of PSMA7 mRNACTDPMID:15890375
Psma7Rat3H-1,2-dithiole-3-thione increases expressionISOPsma7 (Mus musculus)64804641 and 2-dithiol-3-thione results in increased expression of PSMA7 mRNACTDPMID:15375163
Psma7Rat4,4'-sulfonyldiphenol increases expressionISOPsma7 (Mus musculus)6480464bisphenol S results in increased expression of PSMA7 mRNACTDPMID:39298647
Psma7Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of PSMA7 mRNACTDPMID:36041667
Psma7Rat4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one increases expressionEXP 64804644-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in increased expression of PSMA7 mRNACTDPMID:15890375
Psma7Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of PSMA7 mRNACTDPMID:30047161
Psma7Ratacrolein multiple interactionsISOPSMA7 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased expression of PSMA7 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased expression of PSMA7 mRNACTDPMID:32699268
Psma7Ratacrylamide increases expressionISOPSMA7 (Homo sapiens)6480464Acrylamide results in increased expression of PSMA7 mRNACTDPMID:32763439
Psma7Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of PSMA7 mRNACTDPMID:15890375
Psma7Rataflatoxin B1 increases methylationISOPSMA7 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of PSMA7 geneCTDPMID:27153756
Psma7Ratall-trans-retinoic acid increases expressionISOPSMA7 (Homo sapiens)6480464Tretinoin results in increased expression of PSMA7 mRNACTDPMID:17218384

1 to 20 of 109 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Ratproteasome-mediated ubiquitin-dependent protein catabolic process involved_inIBAFB:FBgn0002284 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Psma7Ratproteolysis involved in protein catabolic process involved_inIEAInterPro:IPR0013531600115GO_REF:0000002InterProGO_REF:0000002
Psma7Ratubiquitin-dependent protein catabolic process involved_inIEAInterPro:IPR0004261600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component
1 to 20 of 25 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Psma7Ratcytoplasm located_inIEAARBA:ARBA000269711600115GO_REF:0000117UniProtGO_REF:0000117
Psma7Ratcytoplasm is_active_inISOPSMA7 (Homo sapiens)1624291 PMID:34711951RGDPMID:34711951
Psma7Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Psma7Ratcytoplasm is_active_inIEAUniProtKB:O14818 and ensembl:ENSP000003599101600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratnucleus is_active_inISOPSMA7 (Homo sapiens)1624291 PMID:34711951RGDPMID:34711951
Psma7Ratnucleus is_active_inIEAUniProtKB:O14818 and ensembl:ENSP000003599101600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Psma7Ratnucleus is_active_inIBAMGI:1920927 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Psma7Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Psma7Ratproteasome complex part_ofISOPSMA7 (Homo sapiens)1624291 PMID:17323924RGDPMID:17323924
Psma7Ratproteasome complex part_ofIEAUniProtKB:O14818 and ensembl:ENSP000003599101600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratproteasome complex part_ofIEAUniProtKB-KW:KW-06471600115GO_REF:0000043UniProtGO_REF:0000043
Psma7Ratproteasome core complex part_ofISOPsma7 (Mus musculus)1624291 PMID:16857966 and PMID:20498273RGDPMID:16857966 and PMID:20498273
Psma7Ratproteasome core complex part_ofIEAUniProtKB:Q9Z2U0 and ensembl:ENSMUSP000000290821600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratproteasome core complex part_ofIEAUniProtKB:O14818 and ensembl:ENSP000003599101600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratproteasome core complex part_ofIEAInterPro:IPR0013531600115GO_REF:0000002InterProGO_REF:0000002
Psma7Ratproteasome core complex part_ofISOPSMA7 (Homo sapiens)1624291 PMID:34711951RGDPMID:34711951
Psma7Ratproteasome core complex part_ofISSUniProtKB:Q9Z2U01600115GO_REF:0000024UniProtGO_REF:0000024
Psma7Ratproteasome core complex, alpha-subunit complex part_ofISSUniProtKB:P403021600115GO_REF:0000024UniProtGO_REF:0000024
1 to 20 of 25 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Ratidentical protein binding enablesISOPSMA7 (Homo sapiens)1624291UniProtKB:O14818 more ...RGDPMID:15225636 and PMID:17948026
Psma7Ratidentical protein binding enablesIEAUniProtKB:O14818 and ensembl:ENSP000003599101600115GO_REF:0000107EnsemblGO_REF:0000107
Psma7Ratprotein binding enablesISOPSMA7 (Homo sapiens)1624291UniProtKB:O95456 more ...RGDPMID:12376572 more ...

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Ratubiquitin/proteasome degradation pathway  IEA 6907045 KEGGrno:03050

#
Reference Title
Reference Citation
1. The proteasome alpha-subunit XAPC7 interacts specifically with Rab7 and late endosomes. Dong J, etal., J Biol Chem 2004 May 14;279(20):21334-42. Epub 2004 Mar 2.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Molecular cloning of two types of cDNA encoding subunit RC6-I of rat proteasomes. Ni R, etal., Biochim Biophys Acta 1995 Oct 17;1264(1):45-52.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:12947022   PMID:15225636   PMID:15277470   PMID:16810255   PMID:16857966   PMID:17323924   PMID:17948026   PMID:20458337   PMID:20498273   PMID:21630459   PMID:22793692  
PMID:23376485   PMID:23533145   PMID:30133132   PMID:30361391  



Psma7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Celera3165,436,256 - 165,442,444 (+)NCBICelera
Cytogenetic Map3q43NCBI
PSMA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,136,733 - 62,143,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,136,733 - 62,143,440 (-)EnsemblGRCh38hg38GRCh38
GRCh372060,711,789 - 60,718,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,145,186 - 60,151,869 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,145,185 - 60,151,869NCBI
Celera2057,446,966 - 57,453,645 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,489,262 - 57,493,481 (-)NCBIHuRef
CHM1_12060,612,850 - 60,619,583 (-)NCBICHM1_1
T2T-CHM13v2.02063,927,604 - 63,934,261 (-)NCBIT2T-CHM13v2.0
Psma7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,678,160 - 179,684,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,678,167 - 179,684,226 (-)EnsemblGRCm39 Ensembl
GRCm382180,036,367 - 180,042,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,036,374 - 180,042,433 (-)EnsemblGRCm38mm10GRCm38
MGSCv372179,771,081 - 179,777,107 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362179,965,784 - 179,971,810 (-)NCBIMGSCv36mm8
Celera2184,120,963 - 184,127,008 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.55NCBI
Psma7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBIChiLan1.0ChiLan1.0
PSMA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,918,126 - 67,924,848 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12067,911,241 - 67,918,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,502,446 - 58,509,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12059,822,545 - 59,826,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,822,545 - 59,826,802 (-)Ensemblpanpan1.1panPan2
PSMA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,182,344 - 46,186,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,182,420 - 46,186,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,419,604 - 45,424,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,039,071 - 47,044,386 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,039,078 - 47,044,368 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,140,666 - 46,145,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,263,612 - 46,268,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,017,870 - 47,023,195 (-)NCBIUU_Cfam_GSD_1.0
Psma7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,355,315 - 194,360,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365149,806,624 - 9,813,723 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365149,808,966 - 9,819,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,566,373 - 61,572,438 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,566,373 - 61,571,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,076,205 - 69,079,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.122,094,331 - 2,101,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl22,094,455 - 2,100,936 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605050,044,223 - 50,050,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,011,606 - 28,017,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,011,606 - 28,017,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Psma7
29 total Variants

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:125
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000011724
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat

1 to 10 of 17 rows
RH136620  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83187,514,966 - 187,515,544 (+)Marker Load Pipeline
mRatBN7.23167,137,341 - 167,137,920 (+)MAPPERmRatBN7.2
Rnor_6.03175,420,105 - 175,420,683NCBIRnor6.0
Rnor_5.03181,698,000 - 181,698,578UniSTSRnor5.0
RGSC_v3.43169,100,870 - 169,101,448UniSTSRGSC3.4
Celera3165,441,803 - 165,442,381UniSTS
Cytogenetic Map3q43UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000082686   ⟹   ENSRNOP00000071611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095041   ⟹   ENSRNOP00000078026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,720 - 167,143,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106991   ⟹   ENSRNOP00000087849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116159   ⟹   ENSRNOP00000097117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
RefSeq Acc Id: NM_001008217   ⟹   NP_001008218
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,903 - 187,521,246 (-)NCBI
mRatBN7.23167,137,279 - 167,143,626 (-)NCBI
Rnor_6.03175,420,042 - 175,426,384 (-)NCBI
Rnor_5.03181,692,298 - 181,698,641 (+)NCBI
RGSC_v3.43169,100,807 - 169,107,149 (-)RGD
Celera3165,436,256 - 165,442,444 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283532   ⟹   XP_063139602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,901 - 187,521,289 (-)NCBI
Protein RefSeqs NP_001008218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI27467 (Get FASTA)   NCBI Sequence Viewer  
  EDL88834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071611
GenBank Protein P48004 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008218   ⟸   NM_001008217
- UniProtKB: A0A0G2K0W9 (UniProtKB/TrEMBL),   A6KMC7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071611   ⟸   ENSRNOT00000082686
Ensembl Acc Id: ENSRNOP00000097117   ⟸   ENSRNOT00000116159
Ensembl Acc Id: ENSRNOP00000078026   ⟸   ENSRNOT00000095041
Ensembl Acc Id: ENSRNOP00000087849   ⟸   ENSRNOT00000106991
Name Modeler Protein Id AA Range Protein Structure
AF-P48004-F1-model_v2 AlphaFold P48004 1-254 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692728
Promoter ID:EPDNEW_R3253
Type:initiation region
Name:Psma7_1
Description:proteasome subunit alpha 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03175,426,376 - 175,426,436EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-46373 BioCyc
Ensembl Genes ENSRNOG00000056853 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082686 ENTREZGENE
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7381383 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot
  Proteasome_alpha UniProtKB/Swiss-Prot
  Proteasome_alpha-type UniProtKB/Swiss-Prot
  Proteasome_asu_N UniProtKB/Swiss-Prot
  Proteasome_sua/b UniProtKB/Swiss-Prot
MGC_CLONE MGC:156537 IMAGE-MGC_LOAD
NCBI Gene 29674 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/Swiss-Prot
Pfam Proteasome UniProtKB/Swiss-Prot
  Proteasome_A_N UniProtKB/Swiss-Prot
PhenoGen Psma7 PhenoGen
PROSITE PROTEASOME_ALPHA_1 UniProtKB/Swiss-Prot
  PROTEASOME_ALPHA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000056853 RatGTEx
SMART Proteasome_A_N UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot
UniProt A0A0G2K0W9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y830 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASC7_RAT UniProtKB/TrEMBL
  A0JPK2_RAT UniProtKB/TrEMBL
  A6KMC7 ENTREZGENE, UniProtKB/TrEMBL
  P48004 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psma7  proteasome 20S subunit alpha 7  Psma7  proteasome subunit alpha 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psma7  proteasome subunit alpha 7  Psma7  proteasome (prosome, macropain) subunit, alpha type 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Psma7  proteasome (prosome, macropain) subunit, alpha type 7      Name updated 70584 APPROVED

Note Type Note Reference