Rn28s (28S ribosomal RNA) - Rat Genome Database

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Gene: Rn28s (28S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: Rn28s
Name: 28S ribosomal RNA
RGD ID: 5687329
Description: Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome; INTERACTS WITH bisphenol A; lidocaine.
Type: rrna
RefSeq Status: VALIDATED
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr811481,241 - 486,046 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl11481,241 - 486,044 (-)EnsemblGRCr8
UTH_Rnor_SHR_UtxPNT010000046.11,685 - 6,487 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0EKU010000023.14,094,566 - 4,099,368 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0311,482,156 - 11,486,958 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd111,069,099 - 1,073,901 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive11281,243 - 286,045 (-)NCBILyon_Normotensive
Lyon_Hypertensive111,258,218 - 1,263,020 (-)NCBILyon_Hypertensive
F344_StmMcwi1111,700,751 - 11,705,553 (-)NCBIF344_StmMcwi
Rnor_6.01446,647,095 - 46,655,563 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01446,824,862 - 46,834,539 (+)NCBIRnor_5.0Rnor_5.0rn5
Cytogenetic Map14p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
lidocaine  (EXP)

References
Additional References at PubMed
PMID:6287418   PMID:6316273   PMID:6323401   PMID:6328433   PMID:16751776  


Genomics

Variants

.
Variants in Rn28s
9 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:74
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000075567
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 6 51 67 126 83 11 50 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000108683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl11481,241 - 486,044 (-)Ensembl
RefSeq Acc Id: NR_046246
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr811481,241 - 486,046 (-)NCBI
Rnor_6.01446,647,095 - 46,655,563 (+)NCBI
Rnor_5.01446,824,862 - 46,834,539 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-234 BioCyc
Ensembl Genes ENSRNOG00000074582 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000108683 ENTREZGENE
NCBI Gene Rn28s ENTREZGENE
PhenoGen Rn28s PhenoGen
RatGTEx ENSRNOG00000074582 RatGTEx
RNAcentral URS0000CCF48A RNACentral
  URS0002A1485C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Rn28s  28S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL