Rnu5e5 (RNA, U5E small nuclear 5) - Rat Genome Database

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Gene: Rnu5e5 (RNA, U5E small nuclear 5) Rattus norvegicus
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Symbol: Rnu5e5 (Ensembl: Rnu5e-5)
Name: RNA, U5E small nuclear 5
RGD ID: 41195544
Description: Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. Orthologous to human RNU5E-9P (RNA, U5E small nuclear 9, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120101134; Rnu5e-5; U5; U5 spliceosomal RNA
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,524,576 - 237,524,691 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2237,524,576 - 237,524,691 (-)EnsemblGRCr8
mRatBN7.22234,864,277 - 234,864,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,864,277 - 234,864,392 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl2251,829,017 - 251,829,132 (-)NCBIrn6Rnor6.0
Cytogenetic Map2q44NCBI
JBrowse:




References

Genomics

Comparative Map Data
Rnu5e5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,524,576 - 237,524,691 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2237,524,576 - 237,524,691 (-)EnsemblGRCr8
mRatBN7.22234,864,277 - 234,864,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,864,277 - 234,864,392 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl2251,829,017 - 251,829,132 (-)NCBIrn6Rnor6.0
Cytogenetic Map2q44NCBI
RNU5E-9P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,142,548 - 178,142,651 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,142,548 - 178,142,651 (+)Ensemblhg38GRCh38
GRCh372179,007,275 - 179,007,378 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q31.2NCBI
HuRef2170,877,749 - 170,877,852 (+)NCBIHuRef
CHM1_12179,013,372 - 179,013,475 (+)NCBICHM1_1
T2T-CHM13v2.02178,625,289 - 178,625,392 (+)NCBIT2T-CHM13v2.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2237,524,576 - 237,524,691 (-)Ensembl
mRatBN7.2 Ensembl2234,864,277 - 234,864,392 (-)Ensembl
RefSeq Acc Id: XR_005501531
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82237,524,576 - 237,524,691 (-)NCBI
mRatBN7.22234,864,277 - 234,864,392 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41195544 AgrOrtholog
BioCyc Gene G2FUF-50913 BioCyc
Ensembl Genes ENSRNOG00000052749 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090106 ENTREZGENE
NCBI Gene LOC120101134 ENTREZGENE
PhenoGen Rnu5e5 PhenoGen
RatGTEx ENSRNOG00000052749 RatGTEx
RNAcentral URS00007238B9 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-07-01 Rnu5e5  RNA, U5E small nuclear 5  Rnu5e-5  RNA, U5E small nuclear 5  Symbol changed 629549 APPROVED
2022-07-05 Rnu5e-5  RNA, U5E small nuclear 5  LOC120101134  U5 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120101134  U5 spliceosomal RNA  U5  U5 spliceosomal RNA  Data merged from RGD:15007387 737654 PROVISIONAL
2021-01-27 LOC120101134  U5 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U5  U5 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL