LOC120101393 (5.8S ribosomal RNA) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC120101393 (5.8S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120101393
Name: 5.8S ribosomal RNA
RGD ID: 41091787
Description: Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome.
Type: rrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr823,074,329 - 3,074,481 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl23,074,329 - 3,074,481 (+)EnsemblGRCr8
mRatBN7.221,362,812 - 1,362,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl21,362,812 - 1,362,964 (+)EnsemblmRatBN7.2
Cytogenetic Map2q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120101393
10 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat


Expression

RNA-SEQ Expression

ectoderm
nervous system
reproductive system
sensory system
visual system
1 1 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000103577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl23,074,329 - 3,074,481 (+)Ensembl
mRatBN7.2 Ensembl21,362,812 - 1,362,964 (+)Ensembl
RefSeq Acc Id: XR_005501739
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr823,074,329 - 3,074,481 (+)NCBI
mRatBN7.221,362,812 - 1,362,964 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55151 BioCyc
Ensembl Genes ENSRNOG00000064856 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000103577 ENTREZGENE
NCBI Gene LOC120101393 ENTREZGENE
PhenoGen LOC120101393 PhenoGen
RatGTEx ENSRNOG00000064856 RatGTEx
RNAcentral URS0000664B0F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120101393  5.8S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL