LOC120100351 (small nucleolar RNA SNORA31) - Rat Genome Database

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Gene: LOC120100351 (small nucleolar RNA SNORA31) Rattus norvegicus
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Symbol: LOC120100351
Name: small nucleolar RNA SNORA31
RGD ID: 41091704
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07000247.1
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,128,572 - 8,128,698 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl18,128,572 - 8,128,698 (+)EnsemblGRCr8
mRatBN7.216,308,354 - 6,308,480 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl16,038,601 - 6,038,727 (+)NCBIrn6Rnor6.0
Cytogenetic Map1p13NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120100351
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,128,572 - 8,128,698 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl18,128,572 - 8,128,698 (+)EnsemblGRCr8
mRatBN7.216,308,354 - 6,308,480 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl16,038,601 - 6,038,727 (+)NCBIrn6Rnor6.0
Cytogenetic Map1p13NCBI
LOC124900397
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,662,000 - 19,662,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,662,000 - 19,662,090 (+)Ensemblhg38GRCh38
Cytogenetic Map17p11.2NCBI
T2T-CHM13v2.01719,610,615 - 19,610,705 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC120100351
6 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl18,128,572 - 8,128,698 (+)Ensembl
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)Ensembl
RefSeq Acc Id: XR_005500119
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818,128,572 - 8,128,698 (+)NCBI
mRatBN7.216,308,354 - 6,308,480 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62386 BioCyc
Ensembl Genes ENSRNOG00000058048 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082128 ENTREZGENE
NCBI Gene LOC120100351 ENTREZGENE
PhenoGen LOC120100351 PhenoGen
RatGTEx ENSRNOG00000058048 RatGTEx
RNAcentral URS000063B8AE RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100351  small nucleolar RNA SNORA31  AABR07000247.1    Data merged from RGD:15011481 737654 PROVISIONAL
2021-01-27 LOC120100351  small nucleolar RNA SNORA31      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07000247.1        Symbol and Name status set to provisional 45752 PROVISIONAL