Snora50d (small nucleolar RNA, H/ACA box 50D) - Rat Genome Database

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Gene: Snora50d (small nucleolar RNA, H/ACA box 50D) Rattus norvegicus
Analyze
Symbol: Snora50d
Name: small nucleolar RNA, H/ACA box 50D
RGD ID: 41013569
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus. Orthologous to human SNORA50D (small nucleolar RNA, H/ACA box 50D).
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07064910.1; LOC120093478; small nucleolar RNA SNORA76
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86101,607,266 - 101,607,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6101,607,266 - 101,607,382 (-)EnsemblGRCr8
mRatBN7.2695,874,149 - 95,874,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,874,149 - 95,874,265 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl6100,233,896 - 100,234,012 (-)NCBIrn6Rnor6.0
Cytogenetic Map6q24NCBI
JBrowse:




References

Genomics

Comparative Map Data
Snora50d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86101,607,266 - 101,607,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6101,607,266 - 101,607,382 (-)EnsemblGRCr8
mRatBN7.2695,874,149 - 95,874,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,874,149 - 95,874,265 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl6100,233,896 - 100,234,012 (-)NCBIrn6Rnor6.0
Cytogenetic Map6q24NCBI
SNORA50D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,160,808 - 69,160,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,160,808 - 69,160,939 (+)Ensemblhg38GRCh38
GRCh37568,456,635 - 68,456,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q13.2NCBI
T2T-CHM13v2.0569,983,391 - 69,983,522 (+)NCBIT2T-CHM13v2.0
Gm23786
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,531,552 - 161,531,670 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,531,552 - 161,531,670 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm39 EnsemblX161,531,550 - 161,531,670 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X162,748,556 - 162,748,674 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,748,556 - 162,748,674 (+)Ensemblmm10GRCm38
GRCm38.p6 EnsemblX162,748,554 - 162,748,674 (+)Ensemblmm10GRCm38
Cytogenetic MapXF4NCBI


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005486524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6101,607,266 - 101,607,382 (-)Ensembl
mRatBN7.2 Ensembl695,874,149 - 95,874,265 (-)Ensembl
RefSeq Acc Id: XR_005486524
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86101,607,266 - 101,607,382 (-)NCBI
mRatBN7.2695,874,149 - 95,874,265 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41013569 AgrOrtholog
BioCyc Gene G2FUF-37035 BioCyc
Ensembl Genes ENSRNOG00000059576 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000083368 ENTREZGENE
NCBI Gene LOC120093478 ENTREZGENE
PhenoGen Snora50d PhenoGen
RatGTEx ENSRNOG00000059576 RatGTEx
RNAcentral URS000062567E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-04-16 Snora50d  small nucleolar RNA, H/ACA box 50D  LOC120093478  small nucleolar RNA SNORA76  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120093478  small nucleolar RNA SNORA76  AABR07064910.1    Data merged from RGD:15012663 737654 PROVISIONAL
2021-01-26 LOC120093478  small nucleolar RNA SNORA76      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07064910.1        Symbol and Name status set to provisional 45752 PROVISIONAL