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Gene: Tmod1 (tropomodulin 1) Rattus norvegicus

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Symbol:

Tmod1

Name:

tropomodulin 1

RGD ID:

3874

Description:

Enables tropomyosin binding activity. Predicted to be involved in actin cytoskeleton organization; lens fiber cell development; and muscle contraction. Predicted to act upstream of or within adult locomotory behavior. Predicted to be located in cytoskeleton; membrane; and sarcomere. Predicted to be part of COP9 signalosome. Predicted to be active in striated muscle thin filament. Orthologous to human TMOD1 (tropomodulin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E-Tmod; E-Tropomodulin; erythrocyte tropomodulin; Tmod; tropomodulin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMOD1 (tropomodulin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tmod1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmod1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMOD1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMOD1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmod1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMOD1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMOD1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmod1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmod1 (tropomodulin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MRGPRX2 (MAS related GPR family member X2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tmod1 (tropomodulin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMOD1 (tropomodulin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmod1 (tropomodulin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tmod	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-94	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmod1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	65,112,062 - 65,189,563 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	65,134,132 - 65,189,561 (+)	Ensembl				GRCr8
mRatBN7.2	5	60,316,445 - 60,393,957 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,338,512 - 60,393,956 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	62,288,970 - 62,366,361 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,108,477 - 64,185,864 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,077,726 - 64,155,120 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	61,635,244 - 61,712,052 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,657,507 - 61,712,051 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	66,151,206 - 66,228,500 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	62,578,142 - 62,668,760 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	58,878,456 - 58,954,722 (+)	NCBI		Celera
RGSC_v3.1	5	62,578,320 - 62,668,938 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

dilated cardiomyopathy (ISS)

ovarian cyst (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (EXP)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

astemizole (EXP)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

D-glucose (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fulvestrant (ISO)

genistein (ISO)

glucose (ISO)

graphite (EXP)

lead nitrate (EXP)

methapyrilene (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nickel sulfate (ISO)

nitrates (ISO)

nitrofen (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (EXP)

pioglitazone (ISO)

pirinixic acid (EXP,ISO)

progesterone (EXP,ISO)

raloxifene (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

sodium fluoride (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

Tesaglitazar (EXP)

titanium dioxide (ISO)

topotecan (EXP)

tremolite asbestos (ISO)

triadimefon (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

adult locomotory behavior (ISO)

lens fiber cell development (IEA,ISO)

muscle contraction (IBA,ISO)

myofibril assembly (IBA,ISO)

pointed-end actin filament capping (IEA)

Cellular Component

actin filament (IEA,ISO,ISS)

COP9 signalosome (IEA,ISO)

cortical cytoskeleton (IEA,ISO)

cytoskeleton (IBA,IEA)

membrane (IEA,ISO)

myofibril (IBA,IEA,ISO,ISS)

sarcomere (IEA,ISO,ISS)

striated muscle thin filament (IBA,IEA,ISO)

Molecular Function

actin binding (IEA,ISO,ISS)

tropomyosin binding (IBA,IDA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cytoplasmic nuclear transfer of the actin-capping protein tropomodulin.	Kong KY and Kedes L, J Biol Chem. 2004 Jul 16;279(29):30856-64. Epub 2004 Apr 29.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10.	N-tropomodulin: a novel isoform of tropomodulin identified as the major binding protein to brain tropomyosin.	Watakabe A, etal., J Cell Sci 1996 Sep;109 ( Pt 9)(2):2299-310.

Additional References at PubMed

PMID:14657235	PMID:14741341	PMID:18723693	PMID:18850735	PMID:20368620	PMID:20685966	PMID:21078668	PMID:23144950	PMID:24840128	PMID:25250574	PMID:26370058	PMID:27126680
PMID:30301754	PMID:35352799

Genomics

Comparative Map Data

Tmod1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	65,112,062 - 65,189,563 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	65,134,132 - 65,189,561 (+)	Ensembl				GRCr8
mRatBN7.2	5	60,316,445 - 60,393,957 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,338,512 - 60,393,956 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	62,288,970 - 62,366,361 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,108,477 - 64,185,864 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,077,726 - 64,155,120 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	61,635,244 - 61,712,052 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,657,507 - 61,712,051 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	66,151,206 - 66,228,500 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	62,578,142 - 62,668,760 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	58,878,456 - 58,954,722 (+)	NCBI		Celera
RGSC_v3.1	5	62,578,320 - 62,668,938 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

TMOD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	97,501,180 - 97,601,743 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	97,501,180 - 97,601,743 (+)	Ensembl			hg38	GRCh38
GRCh37	9	100,263,462 - 100,364,025 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	99,326,258 - 99,403,351 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	70,777,697 - 70,878,281 (+)	NCBI		Celera
Cytogenetic Map	9	q22.33	NCBI
HuRef	9	69,864,624 - 69,965,202 (+)	NCBI		HuRef
CHM1_1	9	100,409,900 - 100,510,457 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	109,673,130 - 109,773,684 (+)	NCBI		T2T-CHM13v2.0

Tmod1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	46,038,940 - 46,116,032 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	46,038,935 - 46,116,032 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	46,038,940 - 46,116,032 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	46,038,935 - 46,116,032 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	46,052,094 - 46,128,904 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	46,082,066 - 46,135,896 (+)	NCBI		MGSCv36	mm8
Celera	4	46,061,367 - 46,138,280 (+)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	24.49	NCBI

Tmod1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	27,841,424 - 27,915,540 (-)	Ensembl
ChiLan1.0	NW_004955419	27,841,424 - 27,915,540 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMOD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	41,856,087 - 41,956,106 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	41,858,466 - 41,958,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	68,592,195 - 68,692,001 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	96,714,237 - 96,813,936 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	96,714,237 - 96,813,936 (+)	Ensembl			panPan2	panpan1.1

TMOD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	54,853,205 - 54,914,236 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	54,853,204 - 54,912,773 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	53,267,257 - 53,348,437 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	55,945,577 - 56,026,805 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	55,945,563 - 56,026,799 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	54,441,999 - 54,523,177 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	54,471,825 - 54,553,034 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	55,168,518 - 55,249,717 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	169,778,850 - 169,856,410 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	6,326,400 - 6,403,057 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	6,347,089 - 6,403,996 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMOD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	239,396,097 - 239,467,758 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	239,375,150 - 239,468,387 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	267,547,207 - 267,646,850 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMOD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	41,808,594 - 41,899,713 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	41,811,036 - 41,877,357 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	38,861,593 - 38,953,232 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmod1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	3,228,305 - 3,299,799 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624825	3,229,095 - 3,299,709 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmod1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	399,167 - 470,713 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmod1
735 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	424
Count of miRNA genes:	223
Interacting mature miRNAs:	285
Transcripts:	ENSRNOT00000013228
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

D5Mco30

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	65,129,594 - 65,129,843 (+)	Marker Load Pipeline
mRatBN7.2	5	60,333,977 - 60,334,226 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,652,973 - 61,653,221	NCBI	Rnor6.0
Rnor_5.0	5	66,168,872 - 66,169,120	UniSTS	Rnor5.0
RGSC_v3.4	5	62,594,555 - 62,594,803	UniSTS	RGSC3.4
RGSC_v3.4	5	62,594,554 - 62,594,802	RGD	RGSC3.4
Celera	5	58,895,847 - 58,896,095	UniSTS
RGSC_v3.1	5	62,594,733 - 62,594,981	RGD
Cytogenetic Map	5	q22	UniSTS

BE102142

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,338,513 - 60,338,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,657,509 - 61,657,666	NCBI	Rnor6.0
Rnor_5.0	5	66,173,408 - 66,173,565	UniSTS	Rnor5.0
RGSC_v3.4	5	62,599,091 - 62,599,248	UniSTS	RGSC3.4
Celera	5	58,900,383 - 58,900,540	UniSTS
RH 3.4 Map	5	379.7	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH129174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,393,009 - 60,393,229 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,711,105 - 61,711,324	NCBI	Rnor6.0
Rnor_5.0	5	66,227,553 - 66,227,772	UniSTS	Rnor5.0
RGSC_v3.4	5	62,667,813 - 62,668,032	UniSTS	RGSC3.4
Celera	5	58,953,775 - 58,953,994	UniSTS
Cytogenetic Map	5	q22	UniSTS

BE101076

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,338,525 - 60,338,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,657,521 - 61,657,666	NCBI	Rnor6.0
Rnor_5.0	5	66,173,420 - 66,173,565	UniSTS	Rnor5.0
RGSC_v3.4	5	62,599,103 - 62,599,248	UniSTS	RGSC3.4
Celera	5	58,900,395 - 58,900,540	UniSTS
RH 3.4 Map	5	376.2	UniSTS
Cytogenetic Map	5	q22	UniSTS

AU048374

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,371,967 - 60,372,125 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,690,957 - 61,691,114	NCBI	Rnor6.0
Rnor_5.0	5	66,207,085 - 66,207,242	UniSTS	Rnor5.0
RGSC_v3.4	5	62,632,540 - 62,632,697	UniSTS	RGSC3.4
Celera	5	58,933,724 - 58,933,881	UniSTS
Cytogenetic Map	5	q22	UniSTS

BF391929

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	65,160,266 - 65,160,448 (+)	Marker Load Pipeline
mRatBN7.2	5	60,364,653 - 60,364,834 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,683,645 - 61,683,825	NCBI	Rnor6.0
Rnor_5.0	5	66,199,773 - 66,199,953	UniSTS	Rnor5.0
RGSC_v3.4	5	62,625,228 - 62,625,408	UniSTS	RGSC3.4
Celera	5	58,926,412 - 58,926,592	UniSTS
RH 3.4 Map	5	717.0	UniSTS
Cytogenetic Map	5	q22	UniSTS

BM383810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,378,356 - 60,378,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,697,344 - 61,697,548	NCBI	Rnor6.0
Rnor_5.0	5	66,213,472 - 66,213,676	UniSTS	Rnor5.0
RGSC_v3.4	5	62,638,927 - 62,639,131	UniSTS	RGSC3.4
Celera	5	58,940,111 - 58,940,315	UniSTS
RH 3.4 Map	5	392.3	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	68	175	91	90	59	108	59	6	384	209	12	161	92	99	31	22	22

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC126894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U59241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013228 ⟹ ENSRNOP00000013228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,134,132 - 65,189,558 (+)	Ensembl
mRatBN7.2 Ensembl	5	60,338,512 - 60,393,956 (+)	Ensembl
Rnor_6.0 Ensembl	5	61,657,507 - 61,712,051 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109364 ⟹ ENSRNOP00000076573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,134,132 - 65,189,561 (+)	Ensembl
mRatBN7.2 Ensembl	5	60,338,512 - 60,387,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113823 ⟹ ENSRNOP00000077344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,138,291 - 65,189,561 (+)	Ensembl
mRatBN7.2 Ensembl	5	60,342,669 - 60,393,956 (+)	Ensembl

RefSeq Acc Id:

NM_013044 ⟹ NP_037176

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,112,062 - 65,189,563 (+)	NCBI
mRatBN7.2	5	60,316,445 - 60,393,957 (+)	NCBI
Rnor_6.0	5	61,635,611 - 61,712,052 (+)	NCBI
Rnor_5.0	5	66,151,206 - 66,228,500 (+)	NCBI
RGSC_v3.4	5	62,578,142 - 62,668,760 (+)	RGD
Celera	5	58,878,456 - 58,954,722 (+)	RGD

Sequence:

show sequence

CCAGCCCCGCGTTCCGCTCGTTGCCGCCGCCCGCGCTCGCGCCGCCCCGCATCCCGGTCACCAG
TTCAGGAGACAAAGACACAGCCTCCCACAATGTCCTACAGACGAGAGCTGGAGAAATATCGAGA
CCTGGATGAGGATGAAATCCTGGGGGCCCTCACAGAGGAGGAGCTCAGGACACTGGAAAACGAG
CTGGATGAGCTAGACCCTGATAATGCACTGCTCCCTGCAGGCCTGAGGCAGAAGGATCAGACCA
CCAAGGCACCCACAGGCCCCTTTAAAAGAGAGGAGCTTTTGGACCACTTGGAAAAGCAAGCGAA
GGAATTTAAGGACCGAGAAGACCTGGTTCCCTACACAGGGGAGAAACGAGGAAAGATCTGGGTT
CCCAAGCAGAAGCCAATGGATCCCGTGCTGGAGAGCGTGACGCTGGAGCCGGAACTGGAGGAGG
CCCTAGCAAATGCCTCAGATGCCGAACTATGTGACATTGCAGCTATTCTGGGCATGCACACGCT
CATGAGCAACCAGCAGTACTACCAAGCCTTGGGCAGCAGCTCCATCGTGAACAAGGAGGGGCTC
AACAGTGTGATCAAACCCACACAGTACAAGCCTGTGCCTGATGAAGAACCAAATTCAACAGATG
TAGAGGAAACGCTGGAGCGAATAAAGAACAATGACCCAGAACTTGAAGAGGTTAATCTTAACAA
CATCCGGAATATTCCCATACCCACTCTCAAGGCGTACGCGGAAGCCCTGAAAGAGAACTCCTAC
GTGAAGAAGTTCAGCATCGTGGGGACCCGCAGCAATGACCCTGTGGCATTTGCTCTTGCTGAAA
TGCTGAAGGTGAACAAGGTGTTGAAGACGCTGAATGTCGAGTCCAACTTCATCTCCGGAGCTGG
GATCCTGTGCCTGGTGGAAGCTCTCCCCCACAACACTTCTCTGGTCGAACTGAAAATCGACAAC
CAGAGCCAGCCTTTGGGCAACAAAGTGGAAATGGAGATCGTGAACATGTTGGAGAAAAACACAA
CACTCCTCAAATTTGGCTACCACTTTACCCAGCAGGGGCCCCGGCTGCGGGCATCCAACGCCAT
GATGAACAACAACGACCTTGTGAGGAAGAGGAGGCTCGCAGACCTGACGGGGCCTATTATTCCC
AAGTGCCGCAGCGGTGTCTAGTGCGCAAAGGGACGCCCACGCCTATGAACTGGACGTGTTCTAC
CGATAATGTGTGTTCCCCAGTGGAGACCAGGAGGCAAATGTTGGCGTGAACTCTTGTGGTTCAG
TTCTTTGTGCACTAAGGTTTAGGGTAACTAGTGACTGTAGTTGGACCTTTTATAAAATATGGTT
AATGTGAAGGTTTTCTTTAGTCACAGAAGTTCAGTCTGATAATTATTTAAAAATGCAGAAGCCC
TCAAGCTGGCAGGCCTTGCTGCAGACAGCGTGACACTGGCAGAGACAGCCCAGGGGCCCTTGGC
GGCCGTGCTTTGGTGCTTAGGTGCACTTACAACATGAATGCATCAGCACACAACACTTCCCACC
TAGTTTGGAAGCATGGTGAAACAATTTATTTCAGATTTGAGCATAGCAGCTCAGTAAAAGAACA
TAGATTCATGATTTTTCAACCCCACTTGAAACGTTAAAATCAAGATTAAAGCTGCCAAATTGAT
TCCAGGATCAAGTCCCCACCCCCTAAGAATGAAAGACAAGCCCCAGAATTTTCTAAGAATCAGA
AAGACACAGGATTCCTTCTGCCAGGTAAGAGAAAGGGGGAGAAAAAGGCAATAGTGGAATTGAG
TTTCAAAACCTACCACGCCAAGCAACAGACATGAGTGCTGTGTGAACACCTGGGAGGTTCTCAT
CTGTAGTCAGAAATCATTTCTTCTTTATTGAATGCCAACTTCATGATGGATGAAAACTTACAAC
CACATAAAAACATCTTCCAATACCGCAGTGAGCCAACGGCTTATGTGAGATCAACACCATTGGG
TGAATTTCCAGTCCACCATGCCTGTGGTATTTAGCATGGCCCTGCTTACAGACACCAAGTGCCT
GCCCGGTCACTTAGGAGACAAATCAAATCACACACGAAGCCTCTGAAGGACAGCAGAGTACAAC
ATCCCAATGGTAAGGAATTAGGAGATCCTGGACATACAACACAAGGAATTATTCTGAAACCTAA
TCTTGGCATTCCTACTGGATCCCTTTAACACCATGGGAGCCAGTAAAAATGTTAAAATACACTG
TTCTTGTGCCTTTTAATAGACCACAGTGCCAGTTAAACTAGTACTTTTGTTGCTTTGGGGAGTG
TTTTCCTTAGGGATTCAGCCGATATGACAGTGATGGCTCAAAAGCTGCAGAGCACAGCCAGGGG
CTTCTGACCTAAGACCTGCACACCGGACTGTAAGGCCATGGACAGCACAGGGTAACTAGAGTGG
CATCGGGGCCTCAGCACTGTGAGTGGTCACTGAGGCCCAGGAGTGGCACCAAGCTGCAGGGACA
GCCAGCTCCACTCAGCTTCTCCTTGAAACACAACTGCAGCTGCATTCTGCATCACTGGAAACTG
CAAAATAATATTAAAGCCATTTGGTGTATGTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039109314 ⟹ XP_038965242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,135,090 - 65,188,334 (+)	NCBI
mRatBN7.2	5	60,339,470 - 60,393,953 (+)	NCBI

RefSeq Acc Id:

XM_039109315 ⟹ XP_038965243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,135,109 - 65,188,334 (+)	NCBI
mRatBN7.2	5	60,339,491 - 60,393,953 (+)	NCBI

RefSeq Acc Id:

XM_063287195 ⟹ XP_063143265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,134,150 - 65,188,334 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_037176	(Get FASTA)	NCBI Sequence Viewer
	XP_038965242	(Get FASTA)	NCBI Sequence Viewer
	XP_038965243	(Get FASTA)	NCBI Sequence Viewer
	XP_063143265	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52855	(Get FASTA)	NCBI Sequence Viewer
	AAH72521	(Get FASTA)	NCBI Sequence Viewer
	EDL98829	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013228
GenBank Protein	P70567	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_037176 ⟸ NM_013044

- UniProtKB:

P70567 (UniProtKB/Swiss-Prot), Q6IMZ5 (UniProtKB/TrEMBL), A6IJA9 (UniProtKB/TrEMBL), F7ELP2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTGPFKR
EELLDHLEKQAKEFKDREDLVPYTGEKRGKIWVPKQKPMDPVLESVTLEPELEEALANASDAEL
CDIAAILGMHTLMSNQQYYQALGSSSIVNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKN
NDPELEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPVAFALAEMLKVNKVLKT
LNVESNFISGAGILCLVEALPHNTSLVELKIDNQSQPLGNKVEMEIVNMLEKNTTLLKFGYHFT
QQGPRLRASNAMMNNNDLVRKRRLADLTGPIIPKCRSGV

hide sequence

Ensembl Acc Id:

ENSRNOP00000013228 ⟸ ENSRNOT00000013228

RefSeq Acc Id:	XP_038965242 ⟸ XM_039109314
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965243 ⟸ XM_039109315
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000077344 ⟸ ENSRNOT00000113823

Ensembl Acc Id:

ENSRNOP00000076573 ⟸ ENSRNOT00000109364

RefSeq Acc Id:	XP_063143265 ⟸ XM_063287195
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P70567-F1-model_v2	AlphaFold	P70567	1-359	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3874	AgrOrtholog
BioCyc Gene	G2FUF-41417	BioCyc
Ensembl Genes	ENSRNOG00000009761	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000013228	ENTREZGENE
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7105834	IMAGE-MGC_LOAD
InterPro	LRR_dom_sf	UniProtKB/Swiss-Prot
	TMOD	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91767	IMAGE-MGC_LOAD
NCBI Gene	25566	ENTREZGENE
PANTHER	PTHR10901	UniProtKB/Swiss-Prot
	PTHR10901:SF8	UniProtKB/Swiss-Prot
Pfam	Tropomodulin	UniProtKB/Swiss-Prot
PhenoGen	Tmod1	PhenoGen
RatGTEx	ENSRNOG00000009761	RatGTEx
Superfamily-SCOP	RNI-like	UniProtKB/Swiss-Prot
TIGR	TC228630
UniProt	A0A8I5YBE0_RAT	UniProtKB/TrEMBL
	A0A8I5ZKA1_RAT	UniProtKB/TrEMBL
	A6IJA9	ENTREZGENE, UniProtKB/TrEMBL
	F7ELP2	ENTREZGENE, UniProtKB/TrEMBL
	P70567	ENTREZGENE
	Q6IMZ5	ENTREZGENE
	TMOD1_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2003-04-09	Tmod1	tropomodulin 1	Tmod	E-Tropomodulin	Symbol and Name updated	629477	APPROVED
2002-06-10	Tmod	E-Tropomodulin			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	mainly expressed in neurons of the brain	61770

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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