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Gene: Tef (TEF transcription factor, PAR bZIP family member) Rattus norvegicus

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Symbol:

Tef

Name:

TEF transcription factor, PAR bZIP family member

RGD ID:

3841

Description:

Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TEF (TEF transcription factor, PAR bZIP family member); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100910463; TEF, PAR bZIP transcription factor; thyrotroph embryonic factor; thyrotrophic embryonic factor; uncharacterized LOC100910463

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	115,197,180 - 115,221,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	115,193,282 - 115,221,928 (+)	Ensembl				GRCr8
mRatBN7.2	7	113,317,191 - 113,341,783 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	113,317,283 - 113,341,783 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	115,089,146 - 115,104,243 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	117,312,643 - 117,327,740 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	117,282,081 - 117,297,178 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	123,033,971 - 123,058,606 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	123,043,503 - 123,058,604 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	123,005,635 - 123,034,385 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	120,164,881 - 120,179,984 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	109,645,394 - 109,660,497 (+)	NCBI		Celera
RGSC_v3.1	7	120,199,287 - 120,211,043 (+)	NCBI
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

8-Br-cAMP (ISO)

acrylamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

buspirone (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chenodeoxycholic acid (ISO)

chlordecone (ISO)

chloroprene (EXP,ISO)

choline (ISO)

chrysene (ISO)

clobetasol (ISO)

clothianidin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

dichloromethane (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

Erionite (ISO)

ethanol (ISO)

fipronil (ISO)

fluoranthene (ISO)

folic acid (ISO)

gentamycin (EXP)

graphene oxide (ISO)

ketamine (EXP)

L-methionine (ISO)

lead diacetate (EXP)

levofloxacin (EXP)

methamphetamine (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nimesulide (EXP)

Nutlin-3 (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pentanal (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sevoflurane (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

styrene (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

tremolite asbestos (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP,ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (IBA,IDA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

rhythmic process (IEA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IDA,IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

double-stranded DNA binding (ISO)

identical protein binding (IPI)

protein binding (ISO)

protein-containing complex binding (IDA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IDA)

sequence-specific DNA binding (IDA)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	TEF, a transcription factor expressed specifically in the anterior pituitary during embryogenesis, defines a new class of leucine zipper proteins.	Drolet DW, etal., Genes Dev 1991 Oct;5(10):1739-53.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:24147051

Genomics

Comparative Map Data

Tef
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	115,197,180 - 115,221,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	115,193,282 - 115,221,928 (+)	Ensembl				GRCr8
mRatBN7.2	7	113,317,191 - 113,341,783 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	113,317,283 - 113,341,783 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	115,089,146 - 115,104,243 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	117,312,643 - 117,327,740 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	117,282,081 - 117,297,178 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	123,033,971 - 123,058,606 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	123,043,503 - 123,058,604 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	123,005,635 - 123,034,385 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	120,164,881 - 120,179,984 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	109,645,394 - 109,660,497 (+)	NCBI		Celera
RGSC_v3.1	7	120,199,287 - 120,211,043 (+)	NCBI
Cytogenetic Map	7	q34	NCBI

TEF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	41,367,455 - 41,399,326 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	41,367,333 - 41,399,326 (+)	Ensembl			hg38	GRCh38
GRCh37	22	41,763,459 - 41,795,330 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	40,107,909 - 40,125,276 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	40,102,462 - 40,119,828	NCBI
Celera	22	25,569,791 - 25,601,729 (+)	NCBI		Celera
Cytogenetic Map	22	q13.2	ENTREZGENE
HuRef	22	24,729,737 - 24,761,736 (+)	NCBI		HuRef
CHM1_1	22	41,723,259 - 41,755,245 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	41,846,283 - 41,878,148 (+)	NCBI		T2T-CHM13v2.0

Tef
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	81,686,874 - 81,711,064 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	81,686,622 - 81,711,064 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	81,802,673 - 81,826,863 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	81,802,421 - 81,826,863 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	81,633,103 - 81,657,293 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	81,630,072 - 81,654,118 (+)	NCBI		MGSCv36	mm8
Celera	15	83,921,481 - 83,945,730 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	38.25	NCBI

Tef
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	26,956,285 - 26,979,045 (+)	Ensembl
ChiLan1.0	NW_004955413	26,956,285 - 26,978,734 (+)	NCBI	ChiLan1.0	ChiLan1.0

TEF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	51,199,380 - 51,231,981 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	53,899,206 - 53,931,265 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	22,263,607 - 22,295,750 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	40,350,470 - 40,382,724 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	40,348,770 - 40,382,724 (+)	Ensembl			panPan2	panpan1.1

TEF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	23,852,551 - 23,878,353 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	23,838,788 - 23,878,190 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	23,785,052 - 23,810,494 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	24,597,068 - 24,622,524 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	24,579,743 - 24,622,510 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	24,313,806 - 24,339,243 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	24,634,699 - 24,660,129 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	24,809,157 - 24,834,606 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tef
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	7,495,566 - 7,517,734 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	505,906 - 528,384 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	505,978 - 528,087 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TEF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	7,119,359 - 7,144,498 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	7,119,354 - 7,135,171 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TEF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	23,910,015 - 23,939,935 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	23,910,119 - 23,940,043 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	101,479,795 - 101,510,399 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tef
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	7,159,362 - 7,186,022 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624752	7,159,791 - 7,186,043 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tef
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	251,542,185 - 251,566,469 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tef
247 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	424
Count of miRNA genes:	230
Interacting mature miRNAs:	301
Transcripts:	ENSRNOT00000026258
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	96700404	118618702	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH66783

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	113,338,421 - 113,338,597 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,055,245 - 123,055,420	NCBI	Rnor6.0
Rnor_5.0	7	123,031,024 - 123,031,199	UniSTS	Rnor5.0
RGSC_v3.4	7	120,176,623 - 120,176,798	UniSTS	RGSC3.4
Celera	7	109,657,136 - 109,657,311	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH130255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	113,341,519 - 113,341,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,058,343 - 123,058,560	NCBI	Rnor6.0
Rnor_5.0	7	123,034,122 - 123,034,339	UniSTS	Rnor5.0
RGSC_v3.4	7	120,179,721 - 120,179,938	UniSTS	RGSC3.4
Celera	7	109,660,234 - 109,660,451	UniSTS
RH 3.4 Map	7	887.2	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH141466

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	113,331,540 - 113,331,725 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,048,333 - 123,048,517	NCBI	Rnor6.0
Rnor_5.0	7	123,024,112 - 123,024,296	UniSTS	Rnor5.0
RGSC_v3.4	7	120,169,711 - 120,169,895	UniSTS	RGSC3.4
Celera	7	109,650,224 - 109,650,408	UniSTS
RH 3.4 Map	5	902.0	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC101895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S58745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026258 ⟹ ENSRNOP00000026258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	115,206,761 - 115,221,928 (+)	Ensembl
mRatBN7.2 Ensembl	7	113,326,711 - 113,341,779 (+)	Ensembl
Rnor_6.0 Ensembl	7	123,043,503 - 123,058,604 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086355 ⟹ ENSRNOP00000072259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	123,043,584 - 123,055,783 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107707 ⟹ ENSRNOP00000081617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	115,193,282 - 115,221,926 (+)	Ensembl
mRatBN7.2 Ensembl	7	113,317,283 - 113,341,783 (+)	Ensembl

RefSeq Acc Id:

NM_019194 ⟹ NP_062067

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	115,206,827 - 115,221,930 (+)	NCBI
mRatBN7.2	7	113,326,711 - 113,341,783 (+)	NCBI
Rnor_6.0	7	123,043,503 - 123,058,606 (+)	NCBI
Rnor_5.0	7	123,005,635 - 123,034,385 (+)	NCBI
RGSC_v3.4	7	120,164,881 - 120,179,984 (+)	RGD
Celera	7	109,645,394 - 109,660,497 (+)	RGD

Sequence:

show sequence

GTCAGCAGCTGCGGCGGGTCGAGCCGCTCCGGCCCATCTCGGGGTGCGGGCGGGGGAGGCGAGG
CGCACGAGTGGGGCGCAGGGCACGATGTCCGAGGCGGGCGGCGGGAAGAAGCCGCCTGTGGAGC
CTCAGGCGGGGCCGGGCCCGGGGCGTGCAGCTGGAGAACGGGGCCTGTCGGGCTCCTTCCCTCT
AGTCCTGAAGAAGCTGATGGAGAACCCCCCGCGCGAGACGCGGCTCGATAAGGAAAAGGGGAAG
GAAAAGCTGGAGGAAGACGAGTCTGCAGCAGCCAGTACCATGGCCGTCTCTGCCTCCCTCATGC
CACCCATCTGGGACAAGACAATCCCCTACGATGGCGAGTCTTTCCACCTAGAGTACATGGACCT
GGATGAGTTCCTGTTGGAGAATGGCATCCCTGCCAGCCCCACCCACCTGGCCCAGAACCTGCTG
CTGCCTGTGGCAGAGCTTGAGGGGAAGGAGTCTGCCAGCTCTTCCACAGCATCACCACCATCTT
CCTCTACTGCCATCTTCCAGCCCTCGGAAACCGTGTCCAGCACAGAATCATCCTTGGAAAAGGA
GAGGGAGACACCAAGTCCCATCGACCCCAACTGTGTGGAGGTTGATGTGAACTTCAATCCTGAC
CCTGCTGACCTGGTCCTCTCTAGTGTACCAGGTGGGGAACTTTTCAACCCTCGGAAGCACAAGT
TTGCAGAGGAAGACCTGAAGCCCCAGCCTATGATCAAGAAAGCCAAGAAAGTCTTTGTCCCTGA
TGAGCAGAAGGATGAGAAGTACTGGACAAGGCGTAAGAAGAACAATGTGGCAGCTAAACGCTCC
CGGGACGCCAGGCGCCTGAAGGAGAATCAGATCACCATCCGGGCAGCATTTCTGGAGAAGGAGA
ACACAGCCCTGCGGACGGAGGTTGCTGAGCTTCGCAAGGAGGTGGGCAAGTGCAAGACCATCGT
GTCCAAGTATGAGACCAAGTACGGGCCCTTGTAACCTGTGCCCCTTGCCCCGCAGGGCACTGCC
TGCACCTCAGACCTCTGCCTGGGGCTTCCTGGACCCCACTCGTGTGGAGACTTAGGACTCTTCA
TGGGCACATGGTGGCGTACCTGCTCTAGGAGCACTCACGTCTCAGCTTCATTATAACATGGCCA
GCACATGTGGTGACTTCCCCAGGGGACCAGGGTCCTCTCTGATGGGGAACATGAGTGAATCTCT
GTAGCCGGGTAAATGGCCCAAGTCTCTTGTTGGATGCTCCGGCGGAATCAGAAGGGGCCTTCTG
GAGTCCAGGTTCTCCTGTACAGAGTGCTCAGGCTTTCCTAGCCTCCCTCAGTCTCCAGTTTGGA
CTGACAAGGGCTGTCTACAGAATGAGTCATGATTATTGTCACCCTAATGTCGTCTCAGGTAGCA
GGTGCATTTCCACTTGGGGTGTGTCTGTCATGTACCTCACCCTCCCCAAAAAAATCTTTGAGAG
AAACATTCATTCCCATCTGTCTCAGAACCAGGACATGCTAATACTCTGTTAGTGTATACATGGT
GGTGGGCCACAGAAGTGGGGTCTCTGCATAGCCTGGAGTTAGGGTGGGGTGTGGGGCTTGCAGT
AGATATGCACCCAACCATTCTTAGCTCCGGCTTCTATCTTGTGGCTCTCAGGCCTGAAGCAGCC
CTGGAATCAATTTCCTCTACATCTCACTTGCTATGGAAGAAAAATTCGCAGGATGGCTGGGCTC
TGGGCTCTAATTGCCAGCGCCTTTGTACCTCTGGGCCATTCTGGAGGCTCTTGACATCCACTAG
CCTGGTCTCTGATTATTGTCACCCAGTATCCCTTCTCAGACCTTAAGTTTAAAAAGAAAACCCA
TCACCTAGGAAGCTTGAGCTTCCTAGCCCCAGGGTACCACTTCTGCATGGTGTTTAGGAAACTG
GCCTCCAGTCTCCTGTTGTGGGCACCAGACTGAGGGCTTTTCTCTTGGGAAGCTCCATGGAACC
CTTGCTCTGGCTCACCAATGTACCCAGACCAGAATCCAGTCTCCCTGAAGGCAGAAGAGGGCCT
GTCACTTCACAGATTAGACTCCCTCCCTTGAGTATCAGCAGGTCGCCTTCTATGAGTTGTATTT
GCTGAAGGTACAGCTCTCATGGGACAGCGGGCTCTGGAGACATTACACTGGCCTGCAGTCCGTC
TGGAGTCAGAAGGTGCCCACATAGGTCTGACCATTGGGTAGAGTGATTTCTTGCAGCTTTGGCT
CCCTCTGTGTCACAGCTGCACCTTTCTCTTCTATTTGGCTGGATTGGAAATCATGGAACCCTCT
GCTCATGTGGGTCAGTTAGGGTGCCCTCCAGGAGGGTGTGTTTATTTGCTCAGGGTGGGCAGCC
TGTGTGAAGGAGGCAGAGGTGATGAGGGTGCTTTATTATACTTAACACTGGCTTTATTTTAAAT
GGTGGCTTAGTTTGGGGCCCCAATCTTTTAAGACTTTTCATAATGATGTTAAGACCAGGGCAGA
CTATCTACTGGCCATGGACTGCAGCCAGGAGATGCCCTGCCCCTCCTGGGACCTGCACACCACC
TCTCTGGGGAACTTGACAAAGGTCCCTAAGGCTAAGGGAGGTCTCCTTCCTACTAGGTCCCTGA
CTTTGACTCTGTGGTTCTCTAGGAACCGTGTGCACACTTGTCTCTGTTGTAACCACAAAGGGCA
GTAGCACCTAGCATGTCAGTGTCCTGCCCCGGCTGCTTGCCTCCCACCCACCCAGGACTTCTCT
GGGCTGGCTGTTCACCCAGAGGCAGTTCCTCATTTTGTTACTGGTGGACAAGCCTTGACCTGAA
AATCTCTTCGTTTTCTTTGGCTAGGAAATGTAAGGTTTGTGTTTTTTAAGTTTTAGTTTTAAGG
AATAGATACTTAACTCTGGATGCCATCTGTGTTCTGACCCTAGTGGGTGGATGGGGCTTACTGT
CTCCCCGTGGTCCCCTCTCTGCCTTGTGGTGCCCTCCTTTCCTTCCAGAAGTAGGTAGGGGTTC
TGGCTCCTCCTAAAGTGCTTACAGAAACAGTGTCTGCTTGCTTCTTGGAGGAGCCTTTGGAATG
AAAACCGGCAGGGAAACAAACCAGAAGGAGCATGTCTGGAGGTTGACATCTTGGCGAGAAAAAA
AAAGTATTCATGTAAGCTTGGCTCCTCCGTTGGCCTTAGGACCCAAGGCTGCACAGAAAGAGTT
GATCTCTGCTGTTGTTTTGCTGTGGAAGCCTCCTGACTCCCCTAGGAGCTGACAGCAGAAGCCT
GAAGCTCCTCTCTTGGATCTTTGAATTCTAAGGAATACCAGGCTCCAGAAGCCAACTTCAGTTT
GGCTTTTCATGGGTTTGTCTTGGGATGAGAAATGTTGTCACTTCCTAGACATCCTGTTCTCAGC
TATGGCAGCCGCAGCAAAGACACCTGAATGAGTTAGAACCTTGCAGGAATGTACATTCAAGCGA
TGTGTGGAAGAAGAACTACATGCTTTTGGAAAGAGCCAGCTGTGGGGGACCCGCTCGGTCACCT
TAGCCTCAGCCCAATAAGTTATGTGGGTCTGACTCCTGTGGTTGGGGACAGCACTAGACAGTGA
ACCTAACTCTTGGTCCACACTCTCTGCTGAGAGGGTGCTGTGGTCTGCTTTCCACTCTGGCAGC
TCCTACAGTCCTCCAGCCTGGGGACAGATGAGAAGCTTGCTTTCCAGGGGCCCTGAGAGGTATG
CTCCCTGGGAGGGGCCTGTAAGTGGAGCTCTTGGTTTCCAGGGCAAAGCCCCACCCACAGCTTC
TTTAACATCTGTTAATTAAGTGCAATAAATTTTTCTAGAAAAAGGCAAAGATGATTTCCAGGTA
GAGATTGCTGTCGTTTGGTGTTGGATGCCGGAACACCACTTGGTTTTATTTTTCTAAGTGCATG
TGATTGGTAGAGTGTTTGGGGCTCTGCATCCTCCCTGGGAGCCGCATTCCAGCAACCCCTCTCC
CTACCTTTGCTGGGGGAAGGAGGCCAGGAGGAAACCCCTTTGTCCCAGCTGTAGAGGCGGAAGC
AGACAGCAGCCCATTGGCCTTATGTGTGTGTGTGCCTGTGCGTGTGTCACTGCTGGTGGGCCGG
AGTGATGTGGTAGGGAGGGAAGGTGGGAATGTATCCTTTTCAAACAAAATTAAATATTTTGAGA
CGAGAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242068 ⟹ XP_006242130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	115,197,180 - 115,221,930 (+)	NCBI
mRatBN7.2	7	113,317,191 - 113,341,783 (+)	NCBI
Rnor_6.0	7	123,033,971 - 123,058,606 (+)	NCBI
Rnor_5.0	7	123,005,635 - 123,034,385 (+)	NCBI

Sequence:

show sequence

GCGAGAAGGGAAGGCCTGGCTGCTGCCGTAGCTGGCAGGTGGCCGAGCTGGGGGTGGACAGGCG
GGCTGGGGCAGGGGCTGCCCATTGGCTGCCTCAGGCTCACACCCCGCCTGCCTCCCTAGCCTGT
GGCTCCCCAGCAGCCCCTGCCTCTCCAGCTGCTTCTAAACTCCGGAGCAAGCACCTCCTGCTGG
GCCATGTCGAGCTGCAACCAGATTGGAGTGGCCCCTGCCATGGACATGCCTGAGGTCCTCAAGT
CCCTGCTGGAGCATTCTTTGCCTTGGTCAGAGAAGAAGGCAGATAAGGAAAAGGGGAAGGAAAA
GCTGGAGGAAGACGAGTCTGCAGCAGCCAGTACCATGGCCGTCTCTGCCTCCCTCATGCCACCC
ATCTGGGACAAGACAATCCCCTACGATGGCGAGTCTTTCCACCTAGAGTACATGGACCTGGATG
AGTTCCTGTTGGAGAATGGCATCCCTGCCAGCCCCACCCACCTGGCCCAGAACCTGCTGCTGCC
TGTGGCAGAGCTTGAGGGGAAGGAGTCTGCCAGCTCTTCCACAGCATCACCACCATCTTCCTCT
ACTGCCATCTTCCAGCCCTCGGAAACCGTGTCCAGCACAGAATCATCCTTGGAAAAGGAGAGGG
AGACACCAAGTCCCATCGACCCCAACTGTGTGGAGGTTGATGTGAACTTCAATCCTGACCCTGC
TGACCTGGTCCTCTCTAGTGTACCAGGTGGGGAACTTTTCAACCCTCGGAAGCACAAGTTTGCA
GAGGAAGACCTGAAGCCCCAGCCTATGATCAAGAAAGCCAAGAAAGTCTTTGTCCCTGATGAGC
AGAAGGATGAGAAGTACTGGACAAGGCGTAAGAAGAACAATGTGGCAGCTAAACGCTCCCGGGA
CGCCAGGCGCCTGAAGGAGAATCAGATCACCATCCGGGCAGCATTTCTGGAGAAGGAGAACACA
GCCCTGCGGACGGAGGTTGCTGAGCTTCGCAAGGAGGTGGGCAAGTGCAAGACCATCGTGTCCA
AGTATGAGACCAAGTACGGGCCCTTGTAACCTGTGCCCCTTGCCCCGCAGGGCACTGCCTGCAC
CTCAGACCTCTGCCTGGGGCTTCCTGGACCCCACTCGTGTGGAGACTTAGGACTCTTCATGGGC
ACATGGTGGCGTACCTGCTCTAGGAGCACTCACGTCTCAGCTTCATTATAACATGGCCAGCACA
TGTGGTGACTTCCCCAGGGGACCAGGGTCCTCTCTGATGGGGAACATGAGTGAATCTCTGTAGC
CGGGTAAATGGCCCAAGTCTCTTGTTGGATGCTCCGGCGGAATCAGAAGGGGCCTTCTGGAGTC
CAGGTTCTCCTGTACAGAGTGCTCAGGCTTTCCTAGCCTCCCTCAGTCTCCAGTTTGGACTGAC
AAGGGCTGTCTACAGAATGAGTCATGATTATTGTCACCCTAATGTCGTCTCAGGTAGCAGGTGC
ATTTCCACTTGGGGTGTGTCTGTCATGTACCTCACCCTCCCCAAAAAAATCTTTGAGAGAAACA
TTCATTCCCATCTGTCTCAGAACCAGGACATGCTAATACTCTGTTAGTGTATACATGGTGGTGG
GCCACAGAAGTGGGGTCTCTGCATAGCCTGGAGTTAGGGTGGGGTGTGGGGCTTGCAGTAGATA
TGCACCCAACCATTCTTAGCTCCGGCTTCTATCTTGTGGCTCTCAGGCCTGAAGCAGCCCTGGA
ATCAATTTCCTCTACATCTCACTTGCTATGGAAGAAAAATTCGCAGGATGGCTGGGCTCTGGGC
TCTAATTGCCAGCGCCTTTGTACCTCTGGGCCATTCTGGAGGCTCTTGACATCCACTAGCCTGG
TCTCTGATTATTGTCACCCAGTATCCCTTCTCAGACCTTAAGTTTAAAAAGAAAACCCATCACC
TAGGAAGCTTGAGCTTCCTAGCCCCAGGGTACCACTTCTGCATGGTGTTTAGGAAACTGGCCTC
CAGTCTCCTGTTGTGGGCACCAGACTGAGGGCTTTTCTCTTGGGAAGCTCCATGGAACCCTTGC
TCTGGCTCACCAATGTACCCAGACCAGAATCCAGTCTCCCTGAAGGCAGAAGAGGGCCTGTCAC
TTCACAGATTAGACTCCCTCCCTTGAGTATCAGCAGGTCGCCTTCTATGAGTTGTATTTGCTGA
AGGTACAGCTCTCATGGGACAGCGGGCTCTGGAGACATTACACTGGCCTGCAGTCCGTCTGGAG
TCAGAAGGTGCCCACATAGGTCTGACCATTGGGTAGAGTGATTTCTTGCAGCTTTGGCTCCCTC
TGTGTCACAGCTGCACCTTTCTCTTCTATTTGGCTGGATTGGAAATCATGGAACCCTCTGCTCA
TGTGGGTCAGTTAGGGTGCCCTCCAGGAGGGTGTGTTTATTTGCTCAGGGTGGGCAGCCTGTGT
GAAGGAGGCAGAGGTGATGAGGGTGCTTTATTATACTTAACACTGGCTTTATTTTAAATGGTGG
CTTAGTTTGGGGCCCCAATCTTTTAAGACTTTTCATAATGATGTTAAGACCAGGGCAGACTATC
TACTGGCCATGGACTGCAGCCAGGAGATGCCCTGCCCCTCCTGGGACCTGCACACCACCTCTCT
GGGGAACTTGACAAAGGTCCCTAAGGCTAAGGGAGGTCTCCTTCCTACTAGGTCCCTGACTTTG
ACTCTGTGGTTCTCTAGGAACCGTGTGCACACTTGTCTCTGTTGTAACCACAAAGGGCAGTAGC
ACCTAGCATGTCAGTGTCCTGCCCCGGCTGCTTGCCTCCCACCCACCCAGGACTTCTCTGGGCT
GGCTGTTCACCCAGAGGCAGTTCCTCATTTTGTTATTGGTGGACAAGCCTTGACCTGAAAATCT
CTTCGTTTTCTTTGGCTAGGAAATGTAAGGTTTGTGTTTTTTAAGTTTTAGTTTTAAGGAATAG
ATACTTAACTCTGGATGCCATCTGTGTTCTGACCCTAGTGGGTGGATGGGGCTTACTGTCTCCC
CGTGGTCCCCTCTCTGCCTTGTGGTGCCCTCCTTTCCTTCCAGAAGTAGGTAGGGGTTCTGGCT
CCTCCTAAAGTGCTTACAGAAACAGTGTCTGCTTGCTTCTTGGAGGAGCCTTTGGAATGAAAAC
CGGCAGGGAAACAAACCAGAAGGAGCATGTCTGGAGGTTGACATCTTGGCGAGAAAAAAAAGTA
TTCATGTAAGCTTGGCTCCTCCGTTGGCCTTAGGACCCAAGGCTGCACAGAAAGAGTTGATCTC
TGCTGTTGTTTTGCTGTGGAAGCCTCCTGACTCCCCTAGGAGCTGACAGCAGAAGCCTGAAGCT
CCTCTCTTGGATCTTTGAATTCTAAGGAATACCAGGCTCCAGAAGCCAACTTCAGTTTGGCTTT
TCATGGGTTTGTCTTGGGATGAGAAATGTTGTCACTTCCTAGACATCCTGTTCTCAGCTATGGC
AGCCGCAGCAAAGACACCTGAATGAGTTAGAACCTTGCAGGAATGTACATTCAAGCGATGTGTG
GAAGAAGAACTACATGCTTTTGGAAAGAGCCAGCTGTGGGGGACCCGCTCGGTCACCTTAGCCT
CAGCCCAATAAGTTATGTGGGTCTGACTCCTGTGGTTGGGGACAGCACTAGACAGTGAACCTAA
CTCTTGGTCCACACTCTCTGCTGAGAGGGTGCTGTGGTCTGCTTTCCACTCTGGCAGCTCCTAC
AGTCCTCCAGCCTGGGGACAGATGAGAAGCTTGCTTTCCAGGGGCCCTGAGAGGTATGCTCCCT
GGGAGGGGCCTGTAAGTGGAGCTCTTGGTTTCCAGGGCAAAGCCCCACCCACAGCTTCTTTAAC
ATCTGTTAATTAAGTGCAATAAATTTTTCTAGAAAAAGGCAAAGATGATTTCCAGGTAGAGATT
GCTGTCGTTTGGTGTTGGATGCCGGAACACCACTTGGTTTTATTTTTCTAAGTGCATGTGATTG
GTAGAGTGTTTGGGGCTCTGCATCCTCCCTGGGAGCCGCATTCCAGCAACCCCTCTCCCTACCT
TTGCTGGGGGAAGGAGGCCAGGAGGAAACCCCTTTGTCCCAGCTGTAGAGGCGGAAGCAGACAG
CAGCCCATTGGCCTTATGTGTGTGTGTGCCTGTGCGTGTGTCACTGCTGGTGGGCCGGAGTGAT
GTGGTAGGGAGGGAAGGTGGGAATGTATCCTTTTCAAACAAAATTAAATATTTTGAGACGAGAA

hide sequence

RefSeq Acc Id:

XM_017594699 ⟹ XP_017450188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	115,197,659 - 115,221,930 (+)	NCBI
mRatBN7.2	7	113,317,550 - 113,341,783 (+)	NCBI
Rnor_6.0	7	123,034,275 - 123,058,606 (+)	NCBI

Sequence:

show sequence

ACACAAGTAATCTATACTGGCAAGGTGCCTAAGTGCCTAAGGGGTGGAAGCAGGCACAGGAACA
GTAGCAAGATGGGTAGGAAGGGCTGCAATGCAGAGGACCCCAGGATGTATGTGGGTGCCACACC
AACTCTGGGGCTGCCCTGTGCCTGCTGGCTTCGGGTGCTATGGCCAGCGTGCAGCTACTGACAG
ATAAGGAAAAGGGGAAGGAAAAGCTGGAGGAAGACGAGTCTGCAGCAGCCAGTACCATGGCCGT
CTCTGCCTCCCTCATGCCACCCATCTGGGACAAGACAATCCCCTACGATGGCGAGTCTTTCCAC
CTAGAGTACATGGACCTGGATGAGTTCCTGTTGGAGAATGGCATCCCTGCCAGCCCCACCCACC
TGGCCCAGAACCTGCTGCTGCCTGTGGCAGAGCTTGAGGGGAAGGAGTCTGCCAGCTCTTCCAC
AGCATCACCACCATCTTCCTCTACTGCCATCTTCCAGCCCTCGGAAACCGTGTCCAGCACAGAA
TCATCCTTGGAAAAGGAGAGGGAGACACCAAGTCCCATCGACCCCAACTGTGTGGAGGTTGATG
TGAACTTCAATCCTGACCCTGCTGACCTGGTCCTCTCTAGTGTACCAGGTGGGGAACTTTTCAA
CCCTCGGAAGCACAAGTTTGCAGAGGAAGACCTGAAGCCCCAGCCTATGATCAAGAAAGCCAAG
AAAGTCTTTGTCCCTGATGAGCAGAAGGATGAGAAGTACTGGACAAGGCGTAAGAAGAACAATG
TGGCAGCTAAACGCTCCCGGGACGCCAGGCGCCTGAAGGAGAATCAGATCACCATCCGGGCAGC
ATTTCTGGAGAAGGAGAACACAGCCCTGCGGACGGAGGTTGCTGAGCTTCGCAAGGAGGTGGGC
AAGTGCAAGACCATCGTGTCCAAGTATGAGACCAAGTACGGGCCCTTGTAACCTGTGCCCCTTG
CCCCGCAGGGCACTGCCTGCACCTCAGACCTCTGCCTGGGGCTTCCTGGACCCCACTCGTGTGG
AGACTTAGGACTCTTCATGGGCACATGGTGGCGTACCTGCTCTAGGAGCACTCACGTCTCAGCT
TCATTATAACATGGCCAGCACATGTGGTGACTTCCCCAGGGGACCAGGGTCCTCTCTGATGGGG
AACATGAGTGAATCTCTGTAGCCGGGTAAATGGCCCAAGTCTCTTGTTGGATGCTCCGGCGGAA
TCAGAAGGGGCCTTCTGGAGTCCAGGTTCTCCTGTACAGAGTGCTCAGGCTTTCCTAGCCTCCC
TCAGTCTCCAGTTTGGACTGACAAGGGCTGTCTACAGAATGAGTCATGATTATTGTCACCCTAA
TGTCGTCTCAGGTAGCAGGTGCATTTCCACTTGGGGTGTGTCTGTCATGTACCTCACCCTCCCC
AAAAAAATCTTTGAGAGAAACATTCATTCCCATCTGTCTCAGAACCAGGACATGCTAATACTCT
GTTAGTGTATACATGGTGGTGGGCCACAGAAGTGGGGTCTCTGCATAGCCTGGAGTTAGGGTGG
GGTGTGGGGCTTGCAGTAGATATGCACCCAACCATTCTTAGCTCCGGCTTCTATCTTGTGGCTC
TCAGGCCTGAAGCAGCCCTGGAATCAATTTCCTCTACATCTCACTTGCTATGGAAGAAAAATTC
GCAGGATGGCTGGGCTCTGGGCTCTAATTGCCAGCGCCTTTGTACCTCTGGGCCATTCTGGAGG
CTCTTGACATCCACTAGCCTGGTCTCTGATTATTGTCACCCAGTATCCCTTCTCAGACCTTAAG
TTTAAAAAGAAAACCCATCACCTAGGAAGCTTGAGCTTCCTAGCCCCAGGGTACCACTTCTGCA
TGGTGTTTAGGAAACTGGCCTCCAGTCTCCTGTTGTGGGCACCAGACTGAGGGCTTTTCTCTTG
GGAAGCTCCATGGAACCCTTGCTCTGGCTCACCAATGTACCCAGACCAGAATCCAGTCTCCCTG
AAGGCAGAAGAGGGCCTGTCACTTCACAGATTAGACTCCCTCCCTTGAGTATCAGCAGGTCGCC
TTCTATGAGTTGTATTTGCTGAAGGTACAGCTCTCATGGGACAGCGGGCTCTGGAGACATTACA
CTGGCCTGCAGTCCGTCTGGAGTCAGAAGGTGCCCACATAGGTCTGACCATTGGGTAGAGTGAT
TTCTTGCAGCTTTGGCTCCCTCTGTGTCACAGCTGCACCTTTCTCTTCTATTTGGCTGGATTGG
AAATCATGGAACCCTCTGCTCATGTGGGTCAGTTAGGGTGCCCTCCAGGAGGGTGTGTTTATTT
GCTCAGGGTGGGCAGCCTGTGTGAAGGAGGCAGAGGTGATGAGGGTGCTTTATTATACTTAACA
CTGGCTTTATTTTAAATGGTGGCTTAGTTTGGGGCCCCAATCTTTTAAGACTTTTCATAATGAT
GTTAAGACCAGGGCAGACTATCTACTGGCCATGGACTGCAGCCAGGAGATGCCCTGCCCCTCCT
GGGACCTGCACACCACCTCTCTGGGGAACTTGACAAAGGTCCCTAAGGCTAAGGGAGGTCTCCT
TCCTACTAGGTCCCTGACTTTGACTCTGTGGTTCTCTAGGAACCGTGTGCACACTTGTCTCTGT
TGTAACCACAAAGGGCAGTAGCACCTAGCATGTCAGTGTCCTGCCCCGGCTGCTTGCCTCCCAC
CCACCCAGGACTTCTCTGGGCTGGCTGTTCACCCAGAGGCAGTTCCTCATTTTGTTATTGGTGG
ACAAGCCTTGACCTGAAAATCTCTTCGTTTTCTTTGGCTAGGAAATGTAAGGTTTGTGTTTTTT
AAGTTTTAGTTTTAAGGAATAGATACTTAACTCTGGATGCCATCTGTGTTCTGACCCTAGTGGG
TGGATGGGGCTTACTGTCTCCCCGTGGTCCCCTCTCTGCCTTGTGGTGCCCTCCTTTCCTTCCA
GAAGTAGGTAGGGGTTCTGGCTCCTCCTAAAGTGCTTACAGAAACAGTGTCTGCTTGCTTCTTG
GAGGAGCCTTTGGAATGAAAACCGGCAGGGAAACAAACCAGAAGGAGCATGTCTGGAGGTTGAC
ATCTTGGCGAGAAAAAAAAGTATTCATGTAAGCTTGGCTCCTCCGTTGGCCTTAGGACCCAAGG
CTGCACAGAAAGAGTTGATCTCTGCTGTTGTTTTGCTGTGGAAGCCTCCTGACTCCCCTAGGAG
CTGACAGCAGAAGCCTGAAGCTCCTCTCTTGGATCTTTGAATTCTAAGGAATACCAGGCTCCAG
AAGCCAACTTCAGTTTGGCTTTTCATGGGTTTGTCTTGGGATGAGAAATGTTGTCACTTCCTAG
ACATCCTGTTCTCAGCTATGGCAGCCGCAGCAAAGACACCTGAATGAGTTAGAACCTTGCAGGA
ATGTACATTCAAGCGATGTGTGGAAGAAGAACTACATGCTTTTGGAAAGAGCCAGCTGTGGGGG
ACCCGCTCGGTCACCTTAGCCTCAGCCCAATAAGTTATGTGGGTCTGACTCCTGTGGTTGGGGA
CAGCACTAGACAGTGAACCTAACTCTTGGTCCACACTCTCTGCTGAGAGGGTGCTGTGGTCTGC
TTTCCACTCTGGCAGCTCCTACAGTCCTCCAGCCTGGGGACAGATGAGAAGCTTGCTTTCCAGG
GGCCCTGAGAGGTATGCTCCCTGGGAGGGGCCTGTAAGTGGAGCTCTTGGTTTCCAGGGCAAAG
CCCCACCCACAGCTTCTTTAACATCTGTTAATTAAGTGCAATAAATTTTTCTAGAAAAAGGCAA
AGATGATTTCCAGGTAGAGATTGCTGTCGTTTGGTGTTGGATGCCGGAACACCACTTGGTTTTA
TTTTTCTAAGTGCATGTGATTGGTAGAGTGTTTGGGGCTCTGCATCCTCCCTGGGAGCCGCATT
CCAGCAACCCCTCTCCCTACCTTTGCTGGGGGAAGGAGGCCAGGAGGAAACCCCTTTGTCCCAG
CTGTAGAGGCGGAAGCAGACAGCAGCCCATTGGCCTTATGTGTGTGTGTGCCTGTGCGTGTGTC
ACTGCTGGTGGGCCGGAGTGATGTGGTAGGGAGGGAAGGTGGGAATGTATCCTTTTCAAACAAA
ATTAAATATTTTGAGACGAGAA

hide sequence

RefSeq Acc Id:

XM_039078573 ⟹ XP_038934501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	115,206,411 - 115,214,129 (+)	NCBI
mRatBN7.2	7	113,326,666 - 113,331,892 (+)	NCBI

RefSeq Acc Id:

XM_063263117 ⟹ XP_063119187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	115,197,871 - 115,221,930 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_062067	(Get FASTA)	NCBI Sequence Viewer
	XP_006242130	(Get FASTA)	NCBI Sequence Viewer
	XP_017450188	(Get FASTA)	NCBI Sequence Viewer
	XP_038934501	(Get FASTA)	NCBI Sequence Viewer
	XP_063119187	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB20032	(Get FASTA)	NCBI Sequence Viewer
	AAI01896	(Get FASTA)	NCBI Sequence Viewer
	EDM15701	(Get FASTA)	NCBI Sequence Viewer
	EDM15702	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026258
	ENSRNOP00000026258.3
	ENSRNOP00000081617
GenBank Protein	P41224	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062067 ⟸ NM_019194

- UniProtKB:

Q3T1I8 (UniProtKB/Swiss-Prot), P41224 (UniProtKB/Swiss-Prot), A6HT20 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEAGGGKKPPVEPQAGPGPGRAAGERGLSGSFPLVLKKLMENPPRETRLDKEKGKEKLEEDES
AAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEG
KESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLVLSS
VPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKE
NQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL

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RefSeq Acc Id:	XP_006242130 ⟸ XM_006242068
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZT24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSCNQIGVAPAMDMPEVLKSLLEHSLPWSEKKADKEKGKEKLEEDESAAASTMAVSASLMPPI WDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGKESASSSTASPPSSST AIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAE EDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTA LRTEVAELRKEVGKCKTIVSKYETKYGPL hide sequence

RefSeq Acc Id:

XP_017450188 ⟸ XM_017594699

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASVQLLTDKEKGKEKLEEDESAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLEN
GIPASPTHLAQNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPI
DPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKY
WTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKY
GPL

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Ensembl Acc Id:

ENSRNOP00000026258 ⟸ ENSRNOT00000026258

Ensembl Acc Id:

ENSRNOP00000072259 ⟸ ENSRNOT00000086355

RefSeq Acc Id:	XP_038934501 ⟸ XM_039078573
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000081617 ⟸ ENSRNOT00000107707

RefSeq Acc Id:	XP_063119187 ⟸ XM_063263117
- Peptide Label:	isoform X3

Protein Domains

bZIP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P41224-F1-model_v2	AlphaFold	P41224	1-301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695517

Promoter ID:

EPDNEW_R6041

Type:

multiple initiation site

Name:

Tef_1

Description:

TEF, PAR bZIP transcription factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	123,043,491 - 123,043,551	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3841	AgrOrtholog
BioCyc Gene	G2FUF-32662	BioCyc
Ensembl Genes	ENSRNOG00000019383	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000026258	ENTREZGENE
	ENSRNOT00000026258.7	UniProtKB/Swiss-Prot
	ENSRNOT00000107707	ENTREZGENE
Gene3D-CATH	1.20.5.170	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7932583	IMAGE-MGC_LOAD
InterPro	bZIP	UniProtKB/Swiss-Prot
	bZIP_sf	UniProtKB/Swiss-Prot
	PAR_bZIP	UniProtKB/Swiss-Prot
KEGG Report	rno:29362	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124618	IMAGE-MGC_LOAD
NCBI Gene	29362	ENTREZGENE
PANTHER	PTHR11988	UniProtKB/Swiss-Prot
	PTHR11988:SF24	UniProtKB/Swiss-Prot
Pfam	bZIP_2	UniProtKB/Swiss-Prot
PhenoGen	Tef	PhenoGen
PROSITE	BZIP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019383	RatGTEx
SMART	BRLZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57959	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZT24	ENTREZGENE, UniProtKB/TrEMBL
	A6HT19_RAT	UniProtKB/TrEMBL
	A6HT20	ENTREZGENE, UniProtKB/TrEMBL
	P41224	ENTREZGENE
	Q3T1I8	ENTREZGENE
	TEF_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q3T1I8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-02	Tef	TEF transcription factor, PAR bZIP family member	Tef	TEF, PAR bZIP transcription factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-05-05	Tef	TEF, PAR bZIP transcription factor	Tef	thyrotrophic embryonic factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Tef	thyrotrophic embryonic factor	LOC100910463	uncharacterized LOC100910463	Data merged from RGD:6498257	737654	PROVISIONAL
2012-07-05	LOC100910463	uncharacterized LOC100910463			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-10-23	Tef	thyrotrophic embryonic factor	Tef	thyrotroph embryonic factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Tef	thyrotroph embryonic factor			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains DNA-binding and dimerization domains	70036
gene_expression	mRNA expressed specifically in the anterior pituitary gland	70036
gene_physical_interaction	binds thyroid-stimulating hormone beta (Tshb), albumin D box-binding protein (Dbp), able to homodimerize	70036
gene_product	member of the proline and acidic amino acid-rich (PAR) subfamily of basic region/leucine zipper (bZIP) transcription factors	70036

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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