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Gene: Cntn2 (contactin 2) Rattus norvegicus

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Symbol:

Cntn2

Name:

contactin 2

RGD ID:

3821

Description:

Predicted to enable carbohydrate binding activity and cell-cell adhesion mediator activity. Involved in axonogenesis and cell-matrix adhesion. Located in plasma membrane and synapse. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 5. Orthologous to human CNTN2 (contactin 2); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

axonal glycoprotein TAG-1; axonin-1; contactin 2 (axonal); contactin-2; TAG-1; TAG-564; TAG1; Tax; TAX-1; transient axonal glycoprotein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNTN2 (contactin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cntn2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cntn2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNTN2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNTN2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cntn2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNTN2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNTN2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cntn2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cntn2 (contactin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cntn2 (contactin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CNTN2 (contactin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cntn2 (contactin 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cont	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rig-6	Alliance	DIOPT (OMA\|OrthoFinder)
Caenorhabditis elegans (roundworm):	zig-4	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cntn2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cntn2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,497,269 - 46,528,112 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,499,396 - 46,528,027 (-)	Ensembl				GRCr8
mRatBN7.2	13	43,942,868 - 43,975,973 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,947,265 - 43,975,887 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,554,249 - 46,582,887 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,842,379 - 47,871,008 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,103,086 - 45,131,717 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	49,280,913 - 49,314,061 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	49,285,310 - 49,313,940 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	54,356,315 - 54,389,667 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	45,399,915 - 45,428,789 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	44,281,845 - 44,310,387 (-)	NCBI		Celera
RGSC_v3.1	13	45,413,957 - 45,442,832 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 11 (ISO)

familial adult myoclonic epilepsy 5 (ISO)

high grade glioma (ISO)

lung disease (ISO)

T-cell adult acute lymphocytic leukemia (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-amanitin (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (ISO)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

glyphosate (EXP,ISO)

lead(0) (ISO)

Licochalcone B (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methylmercury chloride (ISO)

Moniliformin (ISO)

mono(2-ethylhexyl) phthalate (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (EXP)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sevoflurane (EXP,ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Tetrachlorobisphenol A (ISO)

thiram (ISO)

titanium dioxide (EXP,ISO)

triazines (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult walking behavior (ISO)

axon guidance (IBA,ISO)

axonal fasciculation (ISO)

axonogenesis (IDA)

brain development (IBA)

cell adhesion (IEA)

cell-cell adhesion (IBA)

cell-matrix adhesion (IDA)

central nervous system myelination (ISO)

cerebral cortex GABAergic interneuron migration (ISO)

clustering of voltage-gated potassium channels (IEA,ISO)

establishment of protein localization to juxtaparanode region of axon (IEA,ISO)

fat cell differentiation (IEA,ISO)

learning (ISO)

microtubule cytoskeleton organization (ISO)

negative regulation of neuron differentiation (ISO)

neuron migration (ISO)

neuron projection development (IEA,ISO)

positive regulation of adenosine receptor signaling pathway (ISO)

positive regulation of protein processing (ISO)

presynaptic membrane organization (IEA,ISO,ISS)

protein localization to juxtaparanode region of axon (ISO)

receptor internalization (ISO)

reduction of food intake in response to dietary excess (IEA,ISO)

regulation of astrocyte differentiation (ISO)

regulation of axon diameter (ISO)

regulation of cell morphogenesis (IEA,ISO)

regulation of neuronal synaptic plasticity (ISO)

response to dietary excess (IEA,ISO)

Cellular Component

axon (IBA,IEA,ISO)

axon initial segment (IEA,ISO)

cell surface (IEA,ISO,TAS)

juxtaparanode region of axon (IEA,ISO)

myelin sheath (IEA,ISO)

neuron projection (IEA,ISO)

neuronal cell body (IEA,ISO)

node of Ranvier (IEA,ISO)

plasma membrane (IBA,IDA,IEA)

postsynaptic membrane (IEA,ISO)

side of membrane (IEA)

synapse (IDA)

Molecular Function

carbohydrate binding (IEA,ISO)

cell adhesion mediator activity (IEA,ISO)

cell-cell adhesion mediator activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Nr-CAM and TAG-1 are expressed in distinct populations of developing precerebellar and cerebellar neurons.	Backer S, etal., Neuroscience 2002;113(4):743-8.
2.	Molecular cytogenetic analysis and resequencing of contactin associated protein-like 2 in autism spectrum disorders.	Bakkaloglu B, etal., Am J Hum Genet. 2008 Jan;82(1):165-73. doi: 10.1016/j.ajhg.2007.09.017.
3.	The axonal glycoprotein TAG-1 is an immunoglobulin superfamily member with neurite outgrowth-promoting activity.	Furley AJ, etal., Cell 1990 Apr 6;61(1):157-70.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Increased expression of HBZ and Foxp3 mRNA in bronchoalveolar lavage cells taken from human T-lymphotropic virus type 1-associated lung disorder patients.	Nakayama Y, etal., Intern Med. 2013;52(23):2599-609. doi: 10.2169/internalmedicine.52.0845.
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	The gene for the axonal cell adhesion molecule TAX-1 is amplified and aberrantly expressed in malignant gliomas.	Rickman DS, etal., Cancer Res 2001 Mar 1;61(5):2162-8.
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14.	The neuronal adhesion protein TAG-1 is expressed by Schwann cells and oligodendrocytes and is localized to the juxtaparanodal region of myelinated fibers.	Traka M, etal., J Neurosci 2002 Apr 15;22(8):3016-24.

Additional References at PubMed

PMID:8089271	PMID:11178983	PMID:11714688	PMID:11807022	PMID:12950086	PMID:12963709	PMID:12975355	PMID:15964824	PMID:16225856	PMID:16701205	PMID:17086203	PMID:18278038
PMID:18550718	PMID:18650339	PMID:18760366	PMID:19109503	PMID:19416878	PMID:19458237	PMID:20962216	PMID:23518707	PMID:26217189	PMID:26722394	PMID:30078168	PMID:33044326

Genomics

Comparative Map Data

Cntn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,497,269 - 46,528,112 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,499,396 - 46,528,027 (-)	Ensembl				GRCr8
mRatBN7.2	13	43,942,868 - 43,975,973 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,947,265 - 43,975,887 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,554,249 - 46,582,887 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,842,379 - 47,871,008 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,103,086 - 45,131,717 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	49,280,913 - 49,314,061 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	49,285,310 - 49,313,940 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	54,356,315 - 54,389,667 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	45,399,915 - 45,428,789 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	44,281,845 - 44,310,387 (-)	NCBI		Celera
RGSC_v3.1	13	45,413,957 - 45,442,832 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

CNTN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,042,949 - 205,078,289 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,042,937 - 205,078,289 (+)	Ensembl			hg38	GRCh38
GRCh37	1	205,012,077 - 205,047,417 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	203,278,963 - 203,313,761 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	201,743,996 - 201,778,793	NCBI
Celera	1	178,147,407 - 178,182,200 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	176,177,847 - 176,212,673 (+)	NCBI		HuRef
CHM1_1	1	206,435,687 - 206,470,502 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	204,307,317 - 204,342,659 (+)	NCBI		T2T-CHM13v2.0

Cntn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	132,437,163 - 132,470,989 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	132,437,165 - 132,470,994 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	132,509,425 - 132,543,251 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	132,509,427 - 132,543,256 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	134,406,002 - 134,439,517 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	134,336,973 - 134,370,462 (-)	NCBI		MGSCv36	mm8
Celera	1	135,118,092 - 135,152,003 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.42	NCBI

Cntn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	40,831,850 - 40,858,569 (+)	Ensembl
ChiLan1.0	NW_004955406	40,831,897 - 40,862,445 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNTN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	44,298,727 - 44,333,562 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	44,264,002 - 44,298,806 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	180,645,259 - 180,680,081 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	184,931,902 - 184,966,482 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	184,931,497 - 184,966,482 (+)	Ensembl			panPan2	panpan1.1

CNTN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	1,570,598 - 1,600,524 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	1,576,898 - 1,596,621 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	1,661,917 - 1,694,727 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	1,564,191 - 1,597,016 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	1,563,948 - 1,596,983 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	1,560,461 - 1,593,270 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	1,951,695 - 1,980,625 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,151,770 - 2,184,597 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cntn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	70,057,146 - 70,080,384 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	7,297,422 - 7,320,846 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	7,297,429 - 7,320,666 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	65,736,740 - 65,776,396 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	65,737,488 - 65,776,412 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CNTN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	24,262,092 - 24,296,740 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	24,261,651 - 24,296,850 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	25,018,404 - 25,053,686 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	6,056,339 - 6,073,588 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	6,052,591 - 6,080,421 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cntn2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	3,318,355 - 3,337,720 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cntn2
460 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	293
Count of miRNA genes:	170
Interacting mature miRNAs:	214
Transcripts:	ENSRNOT00000012190
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	46272922	51216694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH142422

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,959,548 - 43,960,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	49,297,603 - 49,298,877	NCBI	Rnor6.0
Rnor_5.0	13	54,373,249 - 54,374,523	UniSTS	Rnor5.0
RGSC_v3.4	13	45,412,454 - 45,413,728	UniSTS	RGSC3.4
Celera	13	44,294,052 - 44,295,326	UniSTS
Cytogenetic Map	13	q13	UniSTS

AW528446

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,947,330 - 43,947,474 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	49,285,376 - 49,285,519	NCBI	Rnor6.0
Rnor_5.0	13	54,360,776 - 54,360,919	UniSTS	Rnor5.0
RGSC_v3.4	13	45,399,981 - 45,400,124	UniSTS	RGSC3.4
Celera	13	44,281,911 - 44,282,054	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	12	67	163	64	63	32	75	32	6	300	175	11	142	76	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_012884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M31725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012190 ⟹ ENSRNOP00000012190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,499,396 - 46,528,027 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,947,265 - 43,975,887 (-)	Ensembl
Rnor_6.0 Ensembl	13	49,285,310 - 49,313,940 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109604 ⟹ ENSRNOP00000076834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,499,396 - 46,514,970 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,947,265 - 43,962,830 (-)	Ensembl

RefSeq Acc Id:

NM_012884 ⟹ NP_037016

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,499,396 - 46,528,025 (-)	NCBI
mRatBN7.2	13	43,947,265 - 43,975,885 (-)	NCBI
Rnor_6.0	13	49,285,310 - 49,313,938 (-)	NCBI
Rnor_5.0	13	54,356,315 - 54,389,667 (-)	NCBI
RGSC_v3.4	13	45,399,915 - 45,428,789 (-)	RGD
Celera	13	44,281,845 - 44,310,387 (-)	RGD

Sequence:

show sequence

GAATTCCCGCCCGCTGCCGCCACGCCAGGACAGCCAGTGGCTAAGGCCGGCGGGGCAAGCAGCC
CTGAGGCTGGCAGCAGGGTCTGCTCACCAGGCGGCCGCAGCAGTGCCCCAGCCAACACCCTTCC
CGCACTCTAGGTGTGCCTGAGTCTCCAGTTGATTCTCCCGGAGCGGAGCTGCGGCTCCTCTCTT
TTGGACTCTGCCTCTGCCTGAAAGACCCACCATGGGGACACACGCCAGGAAAAAGGCAAGCTTG
CTGCTGCTGGTGCTGGCCACAGTGGCCCTGGTCTCCTCTCCAGGATGGAGTTTTGCCCAGGGAA
CCCCAGCTACCTTTGGACCCATCTTCGAAGAGCAACCCATTGGCCTGCTATTCCCAGAGGAGTC
TGCAGAGGATCAGGTGACACTGGCGTGCCGTGCCCGTGCTAGCCCTCCAGCCACCTACAGGTGG
AAGATGAATGGCACAGATATGAACCTGGAACCTGGCTCCCGTCACCAGCTGATGGGGGGCAACC
TGGTCATCATGAGCCCCACCAAGACACAGGATGCTGGTGTCTACCAGTGCCTAGCCTCCAACCC
AGTAGGCACTGTGGTCAGCAAGGAGGCTGTCCTCCGCTTTGGCTTTCTACAGGAATTCTCCAAG
GAGGAGAGAGACCCTGTGAAAACCCATGAGGGCTGGGGAGTGATGCTGCCCTGTAACCCGCCTG
CCCATTACCCAGGTTTGTCCTACCGCTGGCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGA
TGGGCGACACTTCGTGTCCCAGACTACAGGAAACCTGTACATCGCCCGGACCAATGCCTCAGAC
CTGGGCAACTACTCTTGTTTGGCTACCAGCCACATGGACTTTTCCACCAAGAGTGTCTTCAGCA
AATTTGCGCAGCTCAACCTGGCTGCGGAAGATCCCCGACTCTTCGCTCCCAGTATCAAAGCTCG
GTTCCCCCCGGAGACCTACGCACTAGTTGGGCAGCAAGTCACCCTGGAGTGCTTTGCCTTTGGG
AACCCGGTTCCCCGGATCAAGTGGCGCAAAGTGGATGGTTCCTTGTCCCCTCAGTGGGCCACAG
CTGAGCCCACCCTGCAGATCCCCAGCGTGAGCTTTGAAGACGAGGGTACCTATGAATGTGAGGC
AGAGAACTCCAAGGGTCGTGACACCGTCCAGGGACGCATCATCGTGCAAGCTCAGCCTGAGTGG
CTAAAGGTGATCTCAGACACAGAGGCCGACATTGGCTCCAACTTACGTTGGGGCTGTGCAGCAG
CAGGCAAACCCCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGGCCTCCCAGAACCG
GGTGGAGGTCTTGGCTGGGGACCTGCGATTCTCTAAGCTGAGCCTGGAGGACTCTGGCATGTAC
CAGTGTGTGGCTGAAAACAAGCATGGCACCATCTATGCCAGTGCTGAGCTGGCTGTACAAGCTC
TGGCCCCAGACTTCAGGCAGAACCCTGTGAGACGGCTGATCCCTGCAGCTCGAGGCGGAGAGAT
CAGCATCCTGTGCCAGCCTCGCGCAGCCCCAAAAGCTACAATACTTTGGAGCAAGGGTACTGAG
ATTTTGGGGAACAGTACCAGAGTGACTGTCACTTCCGATGGCACCTTGATCATCAGAAACATCA
GCCGATCCGATGAAGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTAC
CGGGATCCTGTCCGTGCGCGATGCAACCAAGATCACCCTGGCTCCCTCCAGTGCTGACATCAAC
GTGGGTGACAACCTGACCCTACAATGTCATGCCTCGCACGACCCCACTATGGACCTCACGTTCA
CCTGGACCCTGGATGATTTCCCTATTGACTTTGATAAGCCTGGAGGTCACTACCGGAGAGCCAG
TGCGAAGGAGACCATTGGGGACCTGACTATCCTCAACGCCCACGTACGCCATGGAGGGAAGTAC
ACATGCATGGCCCAGACTGTGGTAGATGGTACATCCAAGGAGGCCACAGTCCTGGTCCGAGGTC
CCCCAGGTCCCCCAGGGGGTGTGGTGGTGAGAGACATCGGAGACACCACCGTTCAGCTTAGCTG
GAGTCGTGGCTTTGACAACCACAGCCCCATTGCCAAGTACACGCTGCAAGCTCGTACTCCACCC
TCGGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGTAATGCCGAGACTGCCC
AGGTGCTGGGTCTCATGCCTTGGATGGACTATGAGTTTCGGGTTTCAGCTAGCAACATCTTGGG
CACTGGGGAGCCCAGCGGGCCCTCCAGCAAAATCCGCACTAAGGAAGCAGTCCCCTCAGTGGCA
CCATCGGGACTCAGTGGAGGGGGAGGAGCCCCTGGAGAGCTCATCATCAACTGGACTCCCGTGT
CACGGGAGTACCAGAACGGAGACGGCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTC
CAGCTGGCAGACTGCCCGGGTGCCTGGCGCTGATGCGCAGTACTTCGTCTACGGCAATGACAGC
ATCCAGCCCTACACACCCTTTGAGGTCAAGATCCGAAGCTACAATCGCCGGGGGGATGGGCCCG
AGAGCCTCACTGCGTTAGTGTACTCAGCAGAGGAAGAGCCCAGGGTGGCCCCTGCCAAGGTCTG
GGCCAAGGGGTCCTCATCTTCAGAGATGAACGTGAGCTGGGAGCCTGTGCTACAAGACATGAAC
GGCATTCTCCTGGGATATGAGATTCGCTACTGGAAAGCCGGGGACAACGAAGCAGCCGCTGACC
GAGTGAGGACAGCAGGGCTAGACACCAGTGCCCGAGTCACTGGCCTGAACCCCAACACCAAATA
CCACGTAACTGTGAGGGCCTACAACCGGGCCGGCACTGGACCCGCTAGCCCTTCAGCTGATGCC
ATGACCGTGAAGCCCCCGCCACGGAGACCTCCTGGCAACATCTCCTGGACTTTCTCAAGCTCCA
GTCTCAGCCTTAAGTGGGACCCTGTGGTTCCTCTCCGAAATGAATCTACGGTCACTGGCTACAA
GATGCTGTATCAGAATGATTTGCACCCAACTCCTACGCTCCACCTCACCAGCAAGAACTGGATA
GAAATACCAGTACCCGAAGACATTGGCCACGCTCTGGTACAGATTCGAACCACAGGGCCTGGAG
GGGATGGGATCCCCGCAGAAGTCCACATTGTGAGAAATGGAGGCACAAGCATGATGGTGGAGAG
CGCCGCCGCCCGCCCTGCCCATCCCGGACCTGCGTTCTCCTGCATGGTGATATTGATGCTCGCT
GGCTACCAGAAGCTCTGATCTCAACACTGCCCGCCACGCCCAAGCTGGACACCCACCCTAACAG
ACACAGCGGCTGACCACAGCTCCCTTTCGTCCAAGGTGGTCCAACACTGTGCCTGAGCGTGGTT
GGCTTAGACACCTACTCCCAACAGTACCCTTTATGTAGGAGGTAGGATATTCCTATTCTGCCAC
AGGATAGAACCATGCGAGGAAATTTTCTTTAAGTCAAGAGGCACTGGGCAGTGACTTCCATGAT
AATAGTACTAGGCCTAATGCCTGGACCCCTTGGGGTCTTGGTCGAAAGGAACGGGCCTTTGATT
AAGCAGATGGTCCTTTGGGGCCACAAGTGGCACTGCCATCTGAGATCAGAGTACCAGGCCCAGC
AGGAACATGGGCAGCAGTGGGGTATTGTTTTCCCTCTATGAAGCAGAGGGACCTCTTCTAGTCC
TCACTGGAGAAGCACCATGGTTGGTCCCGACACGGTCTTCCATGACTCCCTGGCTTCCTCGGTA
GCCAAGGACAAGGCCCTGGGTTACTGGGGATAGAAGCTCAAAAGGGTTGAGAGGCTACCCCACC
CGATGGAAAGGGGCACCAGCCTAAGCCCATTGGCCATCCTGGTGGCACTGCCCTCTCAGCCAGC
ACTGCCAAGCCAATCCTGTCGTCCTCCAGATGGAATGGTGGAGTGACAGAGCCACTTCAGGTGG
CTATGTGACTAAAGGGCTTGCCTCGAGGAGTTGCCTTGCCTCATCAAGATGCTTCCTTCATGGA
CCCTCCAGGGTACGGGCAGGAGATGTCCATCTGAACGCTACTCTCTTCCCTTCAGCTCTGCTGC
AAACTTGTGCCTGCCTCCACCTCCCACAACTGCAGGCCCCAGAAATCAGCTCTCAACACAGCAT
CCATTCTTTGTCCTGGGATAGAGAGGCATCCGAGAAGGGCCAGCATCAAAGTGGCCCTGCCTGC
TTCCAGGAATATCCTCCATCACCTGGCCACACCTGCTCCCCAGAACTGCCTGGACTACTCTCTT
CAGTCCCCACAAGAAAAAGGGTTAATAAGGGGGGGGGGGGTGGCCTGCCTTGAGTTCTGGGTAG
TTACCAGGGATAGACCAGACTACGGGAGCTGAAGAAGCCTTATAACTTGACTTATCCGTACCCT
ACACTTAACAGACGAGGAAATGGAGGTGCAGAAGGGTTAGGGACTTCTTGGGGGTCACATGGTC
TGTAAGGACAAGGCATGGTCAGCACAGGGTCTCCTCCCCACCTGTGGGAGGCTCTATAGAGAGA
GGGAGGATGTTGAGCAGTCACAGCCTGTCCTCTAGGACTCTGGAGGACTCTGGAGGAGGAGCCC
TCTGCTTCAAGAGGTTCTGGCTGGTGAGATGGACAAATGAGCTCCAACCAAGGCATAGGCAGAT
TCCAGGAGTCAATGGCCTGGGGCAGCCTTCTGCTGGGAACTCGGCAGGGAGCACTGTCTGGAAG
CCTCTCGGGCTTGCTCATTTCAAGAAGAGGCCAAAGCAAGGACAGAGTTCCTTAGACGAGGACC
CTGCAGCAGCACGACCAGAAAACCCCAGTGTCCACGCCCTCAGCCCACGGGGGCAGCAGAGCAG
GCATTTCAAGATGCACTTGCCCTGCTGCTCCTTAGGCCATTTCTGTAGTTTACAGTTAGAGCTC
TATTTTGTTATGGGTTTTTAAACTTCAAGCCTTGCTCTGTTTTTCTGG

hide sequence

RefSeq Acc Id:

XM_006249746 ⟹ XP_006249808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,497,269 - 46,528,110 (-)	NCBI
mRatBN7.2	13	43,942,868 - 43,975,972 (-)	NCBI
Rnor_6.0	13	49,280,913 - 49,314,061 (-)	NCBI
Rnor_5.0	13	54,356,315 - 54,389,667 (-)	NCBI

Sequence:

show sequence

TCTCCGGCCGAGCGTTGGCTGAGGAGCCTAGCCAGCCAGTGAGCGGAGCCTGCGAGAGGGAGGA
GCGCATCCTGATGCAGAGATGCTGCAGTGGCTCGGGGCGCGCACACACATACGCACCCTCGCCC
GCTGCCGCCACGCCAGGACAGCCAGTGGCTAAGGCCGGCGGGGCCAAGCAGCCCTGAGGCTGGC
AGCAGGGTCTGCTCACCAGGCGGCCGCAGCAGTGCCCCAGCCAACACCCTTCCCGCACTCTAGG
TGACCTCTTTGTGAAGTCTTGGACGAGGGAGGCTATTGAAGAGAGGTGAGAACAGAACACAAGT
TTGGGCAAAGGCTGTCCAGAAGCTGGAACTTGGGAGAGAAACTGAGGTGTGCCTCAGTCTCCAG
TTGATTCTCCCGGAGCGGAGCTGCGGCTCCTCTCTTCTGGACTCTGCCTCTGCCTGAAAGACCC
ACCATGGGGACACACGCCAGGAAAAAGGCAAGCTTGCTGCTGCTGGTGCTGGCCACAGTGGCCC
TGGTCTCCTCTCCAGGATGGAGTTTTGCCCAGGGAACCCCAGCTACCTTTGGACCCATCTTCGA
AGAGCAACCCATTGGCCTGCTATTCCCAGAGGAGTCTGCAGAGGATCAGGTGACACTGGCGTGC
CGTGCCCGTGCTAGCCCTCCAGCCACCTACAGGTGGAAGATGAATGGCACAGATATGAACCTGG
AACCTGGCTCCCGTCACCAGCTGATGGGGGGCAACCTGGTCATCATGAGCCCCACCAAGACACA
GGATGCTGGTGTCTACCAGTGCCTAGCCTCCAACCCAGTAGGCACTGTGGTCAGCAAGGAGGCT
GTCCTCCGCTTTGGCTTTCTACAGGAATTCTCCAAGGAGGAGAGAGACCCTGTGAAAACCCATG
AGGGCTGGGGAGTGATGCTGCCCTGTAACCCGCCTGCCCATTACCCAGGTTTGTCCTACCGCTG
GCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGATGGGCGACACTTTGTGTCCCAGACTACA
GGAAACCTGTACATCGCCCGGACCAATGCCTCAGACCTGGGCAACTACTCTTGTTTGGCTACCA
GCCACATGGACTTTTCCACCAAGAGTGTCTTCAGCAAATTTGCGCAGCTCAACCTGGCTGCGGA
AGATCCCCGACTCTTCGCTCCCAGTATCAAAGCTCGGTTCCCCCCGGAGACCTACGCACTAGTT
GGGCAGCAAGTCACCCTGGAGTGCTTTGCCTTTGGGAACCCGGTTCCCCGGATCAAGTGGCGCA
AAGTGGATGGTTCCTTGTCCCCTCAGTGGGCCACAGCTGAGCCCACCCTGCAGATCCCCAGCGT
GAGCTTTGAAGACGAGGGTACCTATGAATGTGAGGCAGAGAACTCCAAGGGTCGTGACACCGTC
CAGGGACGCATCATCGTGCAAGCTCAGCCTGAGTGGCTAAAGGTGATCTCAGACACAGAGGCCG
ACATTGGCTCCAACTTACGTTGGGGCTGTGCAGCAGCAGGCAAACCCCGGCCCATGGTGCGCTG
GCTGAGAAACGGGGAACCTCTGGCCTCCCAGAACCGGGTGGAGGTCTTGGCTGGGGACCTGCGA
TTCTCTAAGCTGAGCCTGGAGGACTCTGGCATGTACCAGTGTGTGGCTGAAAACAAGCATGGCA
CCATCTATGCCAGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGT
GAGACGGCTGATCCCTGCAGCTCGAGGCGGAGAGATCAGCATCCTGTGCCAGCCTCGCGCAGCC
CCAAAAGCTACAATACTTTGGAGCAAGGGTACTGAGATTTTGGGGAACAGTACCAGAGTGACTG
TCACTTCCGATGGCACCTTGATCATCAGAAACATCAGCCGATCCGATGAAGGCAAATATACCTG
CTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCCGTGCGCGATGCAACC
AAGATCACCCTGGCTCCCTCCAGTGCTGACATCAACGTGGGTGACAACCTGACCCTACAATGTC
ATGCCTCGCACGACCCCACTATGGACCTCACGTTCACCTGGACCCTGGATGATTTCCCTATTGA
CTTTGATAAGCCTGGAGGTCACTACCGGAGAGCCAGTGCGAAGGAGACCATTGGGGACCTGACT
ATCCTCAACGCCCAGCTACGCCATGGAGGGAAGTACACATGCATGGCCCAGACTGTGGTAGATG
GTACATCCAAGGAGGCCACAGTCCTGGTCCGAGGTCCCCCAGGTCCCCCAGGGGGTGTGGTGGT
GAGAGACATCGGAGACACCACCGTTCAGCTTAGCTGGAGTCGTGGCTTTGACAACCACAGCCCC
ATTGCCAAGTACACGCTGCAAGCTCGTACTCCACCCTCGGGGAAATGGAAGCAGGTTCGGACCA
ATCCTGTGAATATCGAGGGTAATGCCGAGACTGCCCAGGTGCTGGGTCTCATGCCTTGGATGGA
CTATGAGTTTCGGGTTTCAGCTAGCAACATCTTGGGCACTGGGGAGCCCAGCGGGCCCTCCAGC
AAAATCCGCACTAAGGAAGCAGTCCCCTCAGTGGCACCATCGGGACTCAGTGGAGGGGGAGGAG
CCCCTGGAGAGCTCATCATCAACTGGACTCCCGTGTCACGGGAGTACCAGAACGGAGACGGCTT
CGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGCTGGCAGACTGCCCGGGTGCCTGGC
GCTGATGCGCAGTACTTCGTCTACGGCAATGACAGCATCCAGCCCTACACACCCTTTGAGGTCA
AGATCCGAAGCTACAATCGCCGGGGGGATGGGCCCGAGAGCCTCACTGCGTTAGTGTACTCAGC
AGAGGAAGAGCCCAGGGTGGCCCCTGCCAAGGTCTGGGCCAAGGGGTCCTCATCTTCAGAGATG
AACGTGAGCTGGGAGCCTGTGCTACAAGACATGAACGGCATTCTCCTGGGATATGAGATTCGCT
ACTGGAAAGCCGGGGACAACGAAGCAGCCGCTGACCGAGTGAGGACAGCAGGGCTAGACACCAG
TGCCCGAGTCACTGGCCTGAACCCCAACACCAAATACCACGTAACTGTGAGGGCCTACAACCGG
GCCGGCACTGGACCCGCTAGCCCTTCAGCTGATGCCATGACCGTGAAGCCCCCGCCACGGAGAC
CTCCTGGCAACATCTCCTGGACTTTCTCAAGCTCCAGTCTCAGCCTTAAGTGGGACCCTGTGGT
TCCTCTCCGAAATGAATCTACGGTCACTGGCTACAAGATGCTGTATCAGAATGATTTGCACCCA
ACTCCTACGCTCCACCTCACCAGCAAGAACTGGATAGAAATACCAGTACCCGAAGACATTGGCC
ACGCTCTGGTACAGATTCGAACCACAGGGCCTGGAGGGGATGGGATCCCCGCAGAAGTCCACAT
TGTGAGAAATGGAGGCACAAGCATGATGGTGGAGAGCGCCGCCGCCCGCCCTGCCCATCCCGGA
CCTGCGTTCTCCTGCATGGTGATATTGATGCTCGCTGGCTACCAGAAGCTCTGATCTCAACACT
GCCCGCCACGCCCAAGCTGGACACCCACCCTAACAGACACAGCGGCTGACCACAGCTCCCCTCG
TCCAAGGTGGTCCAACACTGTGCCTGAGCGTGGTTGGCTTAGACACCTACTCCCAACAGTACCC
TTTATGTAGGAGGTAGGATATTCCTATTCTGCCACAGGATAGAACCATGCGAGGAAATTTTCTT
TAAGTCAAGAGGCACTGGGCAGTGACTTCCATGATAATAGTACTAGGCCTAATGCCTGGACCCC
TTGGGGTCTTGGTCGAGAGGAACGGGCCTTTGATTAAGCAGATGGTCCTTTAGGGCCACAAGTG
GCCACTGCCATCTGAGATCAGAGTACCAGGCCCAGCAGGAACATGGGCAGCAGTGGGGTATCGT
TTTCCCTCTATGAAGCAGAGGGACCTCTTCTAGTCCTCACTGGAGAAGCACCATGGTTGGTCCC
GACACGGTCTTCCATGACTCCCTGGCTTCCTCGGTAGCCAAGGACAAGGCCCTGGGTTACTGGG
GATAGAAGCTCAAAAGGGTTGAGAGGCTACCCCACCCGATGGAAAGGGGCACCAGCCTAAGGCC
CATTGGCCATCCTGGTGGCACTGCCCTCTCAGCCAGCACTGCCAAGCCAATCCTGTCGTCCTCC
AGATGGAATGGTGGAGTGACAGAGCCACTTCAGGTGGCTATGTGACTAAAGGGCTTGCCTCGAG
GAGTTGCCTTGCCTCATCAAGATGCTTCCTTCATGGACCCTCCAGGGTACGGGCAGGAGATGTC
CATCTGAACGCTACTCTCTTCCCTTCAGCTCTGCTGCAAACTTGTGCCTGCCTCCACCTCCCAC
AACTGCAGGCCCCAGAAATCAGCTCTCAACACAGCATCCATTCTTTGTCCTGGGATAGAGAGGC
ATCCGAGAAGGGCCAGCATCAAAGTGGCCCTGCCTGCTTCCAGGAATATCCTCCATCACCTGGC
CACACCTGCTCCCCAGAACTGCCTGGACTACTCTCTTCAGTCCCCACAAGAAAAAGGGTTAATA
AGGGGGGGGGTGGCCTGCCTTGAGTTCTGGGTAGTTACCAGGGATAGACCAGACTACGGGAGCT
GAAGAAGCCTTATAACTTGACTTATCCGTACCCTACACTTAACAGACGAGGAAATGGAGGTGCA
GAAAGGGTTAGGGACTTCTTGGGGGTCACATGGTCTGTAAGGACAAGGCATGGTCAGCACAGAG
TCTCCTCCCCACCTGTGGGAGGCTCTATAGAGAGAGGGAGGATGTTGAGCAGTCACAGCCTGTC
CTCTAGGACTCTGGAGGACTCTGGAGGAGGAGCCCTCTGCTTCAAGAGGTTCTGGCTGGTGAGA
TGGACAAATGAGCTCCAACCAAGGCATAGGCAGATTCCAGGAGTCAATGGCCTGGGGCAGCCTT
CTGCTGGGAACTCGGCAGGGAGCACTGTCTGGAAGCCTCTCGGGCTTGCTCATTTCAAGAAGAG
GCCAAAGCAAGGACAGAGTTCCTTAGACGAGGACCCTGCAGCAGCACGACCAGAAAACCCCAGT
GTCCACGCCCTCAGCCCACGGGGGCAGCAGAGCAGGCATTTCAAGATGCACTTGCCCTGCTGCT
CCTTAGGCCATTTCTGTAGTTTACAGTTAGAGCTCTATTTTGTTATGGGTTTTTAAACTTCAAG
CCTTGCTCTGTTTTTCTGGGCGGGTTTATGTTATGTATTTACCCACTACAATTTTTTAAAGATG
TACACTCACGTACCTTTCCCCTACCACCTCCACACCTTGCCCTAGTTAAGGATTTCTTCCCTGG
GCTGATCAAACCCATCCTCTTCTGCTCCCAGCACCCCAAGTATAAGGGTGCCAGGGGCTTAGTC
ACACGATCCTTCTCCCTCACATGCACCCCCGAGTCGGCCTAGCATCCCTCCCCATCATATGCTG
GCTGGGATTTGGCTCAGGCCTAGCCCTGGGAAACCCTAGAAAGGGGCACCTGAAACCTTCCAAG
GTTTACCTATTTCTCACTGCCTTGGGCTTCAGGAGGGGTGCTAGAGAAATGGGTTTCTAGTGGT
TGGGCAGGGAGAACTGGTCTGGCACTGAACCTAGTTAGGGAGGTGGGAGGCTGCAGCCCCTAAG
CTTTTCTTCTAACGAGGTCTATGAAAAGCAGGCAAGCCGCTGGGAGGCCCAAGAAGAGGAAAAC
CTTAGCCCTGGGCAGGTAGCATTTGCTATGGGGAAGTGAAGCTGTGCTAGCAGCTTGGGGCTTC
CAGTAGAGTGTTAGCTAAGGTGTAAGGAGAACACGCGTGTCTCGCCAAGATGTGAGCTTGTAAA
TGAGCAAAAGGCCTCTTGCTGAGGGAACTTGGATGGACCTTAATGGCTTGGAAGGGAGGGCTAG
ATCAAATTGCCTCTCAGAGTCCCATCCTGGCCAAGGGTCCTTTGACTTCTGTACAGGCTGGGGG
AGCTGTTGGACTGGCCGCTGCTGTGGTCACGACTGTTAGAGATTCCATCCACTCACAGTGAGGT
GAAAGGGACAGCCACAACCAAGCATTCTGTCTGGGTTTAACAGGAAGGTGCCACCCGAGGGCTA
GGGACAAAGCTACCTATAAAAACCTCTTGAGGGACTGGGAGGTGCCCTCTGTCAGTACAAGGGC
TCAGCCACCACACGGAGCTATCCGCTCATTGCCATCTGATGGTGCCACAAGTGAGAGTGGTTCT
GCTATCCAGGGCAGCGGGCAACCCAGACAGTAGGGGAGTAGGGAGGCGATGGGGCAGGAAGGAG
AAGCTCGACAACAAACCGGAGAGAATGAAGCCAAGGTCGGAAAAGCCTTCAGGTAACCGTTGAG
GTATTTCCAGTGTTCTTTCCGATCTTGTATGGGTGACGTCCTGACAAGAGGAGCGGGAAGTGCT
GAGTCCTTTCTTAGACTCCAAATGCCCAGCACAGGGACGCCGTAGAGTAGTATCTGCTATGCCC
CCGGCAGCTGGTTTAAAAGCCATCGGTGGGAATTGATCCACAGAACCGTCCTTACAAAGTAGTG
CCTTTCCCAGTGCCATCCTAGCCTGCACTCTAGCCAAGAGCTCAGCGTGGCTAGCCAAGCTGTC
CTCCCCTCCCGCCTCTCCCAGCAACACAGGCACCTTTTCTTTTTCTAGTCGTCAGATAGCCAGT
AGGACTGCCAGGGGGACAGCAGTATCCTCACACCTGTTACAAACAGTGTGGTGTTTGGTCTTGC
TTGCTGGGACCATACTTTGCCAGGGAGTCTCCAAGTGGAAGTAAGAGGGACCCTAAAGGACTTC
AAGATGCTCACTGGGAAAGGTGCTGGTAGCTAGGGGCGGAGTGTACCTCTCGAACCTGTATGTG
GTCCCAGGATTTGGGAAAGCAGGGCATAAAGAAAACAGAGAAGAGAGAGACAGAGACAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACACACACACACACAGAGAGAGAGA
GAGACAGACAGACAGACACAGAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGA
GAGAGGAGAGAGAGAATATCAAACAGCTCTGTTCAGAGCCCCGGGTAGCCTCAGAAGCCTAGGG
CCCTTAGTTTCTTTAGAGGAGACTCAACCCTCGCGCCTTGGCACCAGATACCTCCAACTCAGCC
CCCATTTCAGAGCCTGCATAGCTCTGAGCTCAGGGCTTCACTGGACCACTGATGACCGTTCTTG
TTTAGATGCAGCTCCTTCCCCCCAGCCCACTGTTCGCTCTTGTAGTAGCTATTTATTGACTGGT
AGCAAGCAGTTCTTAAATAAAGATGTCTTCTCGACCTGCCCAGGCAGCTGACAGCAGCTGCGCA
TCTCACCTCACTGAAGCCTGGGCCTGTTGCTCAGCCAGTACATCCGCCCCTCACATGGCCAGCT
GAGGAAGCTGTGCACGCACACGGTCCACACCGTTTCCTCCAACCGGAGGGAACAGACAGGCCGG
GAGACGTGCAGGCCGGCAGAGGCCAAGCACTGCTGGCCTCCTGAGAAGGTTTCACCTAATGGTG
GTCAACAAGCTGGAGCTGGGTGGCTCGAGGGGTGGAGCCACTACCAGGTCCTCTGATTTCAATG
CATTTGAAGTGTTGACTCCCTGGTCCCAAAGGAGAGTCTCCCCCCATGAAGAGATTAACGTCCC
TAACTGGTAAGGAGGCAATCATCACCTCTGTTGTTTGATCAGGGTGGCACAAAGTGGTGAAACT
CCTAGTCAATTCCAGCCTTGACACTCTCATATCAGACTCCCATTACAGCTAAGCACACGCAGGG
GTACATGCAAGCAGTCCCAGTTCGGCTCTTCACTGTCAAGTATGTAGGACACGTGTTGTGTCCC
AGTTTTTGGGGGGTTTGTATTTCTTGTTTGTTTTTTGGACGGAGGCCACTCTGGTCAATGCATA
GCTTTCTGACCAGAGCCCTTCCAACATGGCTGGTAGTCCACACAGACTTCAGTCTTTCAGTCAC
CTTCCACCTTCCCGGGGCACTTATTATACACAAGAGTCAGGGAACCGAATTGAGGGGGGTTTCC
TGCTGCAACCAGAGCCAGGCAGATGCTAAGCAGGATCTTGCAGAGTTGCCCTGGCTGGCCATGA
GCTCACTATGTAGCCTAGACTAGCCTCAGTCTCCGGAGTAGCTGGGATTACAGGGATATGTCAC
CTTGACCAGCCCTACACTGTTGTCTTTACAAAGCCCATCTGAAAGTCTTTTGTTCTCCACTTTG
CTCAATGGCTTCAAATCCTGAGTCAAAATTCAAGAGCCCAAGGCACAGAGAAGCGGCTATCAAG
AAGAGCTAAGCCACCTTAGGCTTGACTACTGGTCTGCAACAGAATGCTGGCAAGGTGTTAAATG
GTTGGTCCTAGGTGGTTTCCATCTACAAAACGTGAAGCAGGAGCCTTCATCAGTGTTACCAAGT
TCCTTCCAGAGAGACAGAATCTGTCACAGACCCCTTTACACGGCAGACTGCCTAGGACTGAATG
ACACAACAGTCCCCCAAACCAGCACTTCAGTTACAAAACAGCTTACCTCAGGGGATTTCCCTGG
GCTGGCCTCCGACACCTGTGACAAAGATGAGGGTATGACAGACAGGGGAAACATCTCAGCCTCC
CGGGGTGACACAGTAAGTGTGTATCTATGCAGGGCTCTTCTCAGTGAGGGACGCCATCTGAGAC
CATGGACAAGCCTGACTCAGAGCTTTGATGCCACGAGGAACAACGTGAAGGACTTGCTGAGAGA
CCGAAGAGAGAAACACGGAGTGGAGTCTTTGCTACTGGATTAAGATTACGCTAAAAAGCTTTAA
GGGTTTTTAAAAATGGAGGCCTGCACAGAAGCCGGGTGTAGGACCGACAACCGTTTGTTTTCTT
GGGTGTGATAAAGGCACACGGCTATGCAGGAAAAAGCTCAGCTGGACATAAAACGCTGGGCTTT
GAGGTGCACATTTGTAATCCTGGCGCTGGAGAGGCTTACACAGATGGATTCCTACGGCTCACTG
GCCAGCCAGCCTACCTTCATCTGTGAGTCCTATGTCCCAGCAAAGACCCTGCTCAAACAACGTC
CCCTTCCCCAGTGGACACCACCTGAGGAACAACCACCCAGGTTGTCCTCAGGCCCCTGACCTCC
TCAGCACCCATGCATCCACATACACGTGCGTACACGCACATGTGTACACACACACACACACACA
CGAGTCATGTTCGTGCCTAGTTATCAAATGATTCCATAAGATCAATGTATATCTGGAAGTATTC
TGATGGCTCTGGATGATGGGTGCGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGAATGAGATGTCCTCCATGGGTCTCCGGCATTTGAATACTTGGTTCCTA
GTTTGGTGGCTGTTTGGGTAGGCTAGGGGTGACCTTGCTGGAGAAGTCATGGCACTGGAGGTAG
ACTTTGACGTTTATCTCCCTCTGCCTCCTGCTTTTGACTTGAGAAATGACCTGGTGCTTCAGCC
CTCTGCCACCATGGACCTGTCCCCTTGAACTGTAAGCCCCAAATAAACTTCCTATGTTGCTTCC

hide sequence

RefSeq Acc Id:

XM_039090383 ⟹ XP_038946311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,497,269 - 46,528,112 (-)	NCBI
mRatBN7.2	13	43,942,868 - 43,975,973 (-)	NCBI

RefSeq Acc Id:

XR_010056901

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,497,269 - 46,528,110 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_037016	(Get FASTA)	NCBI Sequence Viewer
	XP_006249808	(Get FASTA)	NCBI Sequence Viewer
	XP_038946311	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA42201	(Get FASTA)	NCBI Sequence Viewer
	EDM09793	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012190
GenBank Protein	P22063	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_037016 ⟸ NM_012884
- Peptide Label:	precursor
- UniProtKB:	P22063 (UniProtKB/Swiss-Prot), G3V758 (UniProtKB/TrEMBL), A6IC54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTHARKKASLLLLVLATVALVSSPGWSFAQGTPATFGPIFEEQPIGLLFPEESAEDQVTLACR ARASPPATYRWKMNGTDMNLEPGSRHQLMGGNLVIMSPTKTQDAGVYQCLASNPVGTVVSKEAV LRFGFLQEFSKEERDPVKTHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTG NLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDPRLFAPSIKARFPPETYALVG QQVTLECFAFGNPVPRIKWRKVDGSLSPQWATAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQ GRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPMVRWLRNGEPLASQNRVEVLAGDLRF SKLSLEDSGMYQCVAENKHGTIYASAELAVQALAPDFRQNPVRRLIPAARGGEISILCQPRAAP KATILWSKGTEILGNSTRVTVTSDGTLIIRNISRSDEGKYTCFAENFMGKANSTGILSVRDATK ITLAPSSADINVGDNLTLQCHASHDPTMDLTFTWTLDDFPIDFDKPGGHYRRASAKETIGDLTI LNAHVRHGGKYTCMAQTVVDGTSKEATVLVRGPPGPPGGVVVRDIGDTTVQLSWSRGFDNHSPI AKYTLQARTPPSGKWKQVRTNPVNIEGNAETAQVLGLMPWMDYEFRVSASNILGTGEPSGPSSK IRTKEAVPSVAPSGLSGGGGAPGELIINWTPVSREYQNGDGFGYLLSFRRQGSSSWQTARVPGA DAQYFVYGNDSIQPYTPFEVKIRSYNRRGDGPESLTALVYSAEEEPRVAPAKVWAKGSSSSEMN VSWEPVLQDMNGILLGYEIRYWKAGDNEAAADRVRTAGLDTSARVTGLNPNTKYHVTVRAYNRA GTGPASPSADAMTVKPPPRRPPGNISWTFSSSSLSLKWDPVVPLRNESTVTGYKMLYQNDLHPT PTLHLTSKNWIEIPVPEDIGHALVQIRTTGPGGDGIPAEVHIVRNGGTSMMVESAAARPAHPGP AFSCMVILMLAGYQKL hide sequence

RefSeq Acc Id:	XP_006249808 ⟸ XM_006249746
- Peptide Label:	isoform X1
- UniProtKB:	P22063 (UniProtKB/Swiss-Prot), G3V758 (UniProtKB/TrEMBL), A6IC54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTHARKKASLLLLVLATVALVSSPGWSFAQGTPATFGPIFEEQPIGLLFPEESAEDQVTLACR ARASPPATYRWKMNGTDMNLEPGSRHQLMGGNLVIMSPTKTQDAGVYQCLASNPVGTVVSKEAV LRFGFLQEFSKEERDPVKTHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTG NLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDPRLFAPSIKARFPPETYALVG QQVTLECFAFGNPVPRIKWRKVDGSLSPQWATAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQ GRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPMVRWLRNGEPLASQNRVEVLAGDLRF SKLSLEDSGMYQCVAENKHGTIYASAELAVQALAPDFRQNPVRRLIPAARGGEISILCQPRAAP KATILWSKGTEILGNSTRVTVTSDGTLIIRNISRSDEGKYTCFAENFMGKANSTGILSVRDATK ITLAPSSADINVGDNLTLQCHASHDPTMDLTFTWTLDDFPIDFDKPGGHYRRASAKETIGDLTI LNAQLRHGGKYTCMAQTVVDGTSKEATVLVRGPPGPPGGVVVRDIGDTTVQLSWSRGFDNHSPI AKYTLQARTPPSGKWKQVRTNPVNIEGNAETAQVLGLMPWMDYEFRVSASNILGTGEPSGPSSK IRTKEAVPSVAPSGLSGGGGAPGELIINWTPVSREYQNGDGFGYLLSFRRQGSSSWQTARVPGA DAQYFVYGNDSIQPYTPFEVKIRSYNRRGDGPESLTALVYSAEEEPRVAPAKVWAKGSSSSEMN VSWEPVLQDMNGILLGYEIRYWKAGDNEAAADRVRTAGLDTSARVTGLNPNTKYHVTVRAYNRA GTGPASPSADAMTVKPPPRRPPGNISWTFSSSSLSLKWDPVVPLRNESTVTGYKMLYQNDLHPT PTLHLTSKNWIEIPVPEDIGHALVQIRTTGPGGDGIPAEVHIVRNGGTSMMVESAAARPAHPGP AFSCMVILMLAGYQKL hide sequence

Ensembl Acc Id:

ENSRNOP00000012190 ⟸ ENSRNOT00000012190

RefSeq Acc Id:	XP_038946311 ⟸ XM_039090383
- Peptide Label:	isoform X2
- UniProtKB:	P22063 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000076834 ⟸ ENSRNOT00000109604

Protein Domains

Fibronectin type-III Ig-like Ig-like C2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P22063-F1-model_v2	AlphaFold	P22063	1-1040	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698816

Promoter ID:

EPDNEW_R9339

Type:

single initiation site

Name:

Cntn2_1

Description:

contactin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	49,313,950 - 49,314,010	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3821	AgrOrtholog
BioCyc Gene	G2FUF-18313	BioCyc
Ensembl Genes	ENSRNOG00000009033	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000012190	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	Contactin-1_2_Ig1	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
KEGG Report	rno:25356	UniProtKB/Swiss-Prot
NCBI Gene	25356	ENTREZGENE
PANTHER	CONTACTIN-2	UniProtKB/Swiss-Prot
	PROTEIN SIDEKICK	UniProtKB/Swiss-Prot
Pfam	fn3	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
PhenoGen	Cntn2	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009033	RatGTEx
SMART	FN3	UniProtKB/Swiss-Prot
	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
TIGR	TC232614
UniProt	A0A8I5ZJA8_RAT	UniProtKB/TrEMBL
	A6IC54	ENTREZGENE, UniProtKB/TrEMBL
	CNTN2_RAT	UniProtKB/Swiss-Prot
	G3V758	ENTREZGENE, UniProtKB/TrEMBL
	P22063	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-16	Cntn2	contactin 2	Cntn2	contactin 2 (axonal)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Cntn2	contactin 2 (axonal)	Cntn2	contactin 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2001-11-29	Cntn2	Contactin 2			Symbol and Name updated to reflect Human and Mouse nomenclature	68913	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed by Schwann cells and oligodendrocytes	625462

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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