Sycp3 (synaptonemal complex protein 3) - Rat Genome Database

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Gene: Sycp3 (synaptonemal complex protein 3) Rattus norvegicus
Analyze
Symbol: Sycp3
Name: synaptonemal complex protein 3
RGD ID: 3795
Description: Predicted to enable DNA binding activity. Predicted to be involved in female meiosis chromosome segregation; female meiosis sister chromatid cohesion; and spermatid development. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; meiosis I cell cycle process; and sperm DNA condensation. Located in lateral element. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100362033; RNASCP3; SCP-3; synaptonemal complex protein 3-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,761,476 - 24,775,933 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,761,463 - 24,776,501 (+)EnsemblGRCr8
mRatBN7.2722,874,055 - 22,888,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,874,055 - 22,888,511 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,868,656 - 24,883,113 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,031,350 - 27,045,805 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,808,398 - 26,822,855 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,029,887 - 29,044,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,029,263 - 29,044,251 (+)Ensemblrn6Rnor6.0
Rnor_5.0729,136,815 - 29,151,275 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera720,034,097 - 20,048,375 (+)NCBICelera
RGSC_v3.1725,191,726 - 25,192,071 (+)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
2-ethoxyethanol  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acetic acid  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bromochloroacetic acid  (ISO)
cadmium atom  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
coumarin  (EXP)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
fulvestrant  (EXP)
gentamycin  (EXP)
ibuprofen  (ISO)
indole-3-methanol  (EXP)
itraconazole  (ISO)
ketoconazole  (ISO)
mestranol  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
oxycodone  (EXP)
pirinixic acid  (ISO)
Ptaquiloside  (ISO)
resmethrin  (ISO)
Theaflavin 3,3'-digallate  (ISO)
thiacloprid  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
triptonide  (ISO)
urethane  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The gene encoding a major component of the lateral elements of synaptonemal complexes of the rat is related to X-linked lymphocyte-regulated genes. Lammers JH, etal., Mol Cell Biol 1994 Feb;14(2):1137-46.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Localization of SCP2 and SCP3 protein molecules within synaptonemal complexes of the rat. Schalk JA, etal., Chromosoma. 1998 Dec;107(8):540-8.
Additional References at PubMed
PMID:9774970   PMID:10652260   PMID:10678170   PMID:10794082   PMID:10809667   PMID:12004129   PMID:12091911   PMID:12591952   PMID:12815066   PMID:14643120   PMID:14736746   PMID:15657431  
PMID:15870106   PMID:16428451   PMID:16717126   PMID:16968740   PMID:17141210   PMID:17696610   PMID:17784788   PMID:17912366   PMID:18070917   PMID:18316482   PMID:18391527   PMID:18802469  
PMID:19283064   PMID:19625504   PMID:20339291   PMID:20439489   PMID:20551173   PMID:21539824   PMID:21621532   PMID:21743440   PMID:22011390   PMID:22164254   PMID:22711701   PMID:22854038  
PMID:22863743   PMID:22899867   PMID:23133398   PMID:23555294   PMID:23810942   PMID:24589552   PMID:24891606   PMID:25533956   PMID:25675407   PMID:26358182   PMID:26490168   PMID:27473657  
PMID:27760146   PMID:27856912   PMID:28380054  


Genomics

Comparative Map Data
Sycp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,761,476 - 24,775,933 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,761,463 - 24,776,501 (+)EnsemblGRCr8
mRatBN7.2722,874,055 - 22,888,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,874,055 - 22,888,511 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,868,656 - 24,883,113 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,031,350 - 27,045,805 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,808,398 - 26,822,855 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,029,887 - 29,044,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,029,263 - 29,044,251 (+)Ensemblrn6Rnor6.0
Rnor_5.0729,136,815 - 29,151,275 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera720,034,097 - 20,048,375 (+)NCBICelera
RGSC_v3.1725,191,726 - 25,192,071 (+)NCBI
Cytogenetic Map7q13NCBI
SYCP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,728,648 - 101,739,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,728,648 - 101,739,472 (-)Ensemblhg38GRCh38
GRCh3712102,122,426 - 102,133,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,646,557 - 100,657,378 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412100,624,894 - 100,635,715NCBI
Celera12101,786,455 - 101,797,279 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,182,035 - 99,192,859 (-)NCBIHuRef
CHM1_112102,089,108 - 102,099,932 (-)NCBICHM1_1
T2T-CHM13v2.012101,689,875 - 101,700,721 (-)NCBIT2T-CHM13v2.0
Sycp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,295,449 - 88,309,098 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,295,431 - 88,309,098 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381088,459,587 - 88,473,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,459,569 - 88,473,236 (+)Ensemblmm10GRCm38
MGSCv371087,922,332 - 87,935,981 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361087,889,386 - 87,903,034 (+)NCBIMGSCv36mm8
Celera1090,439,295 - 90,453,077 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.94NCBI
Sycp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,093,652 - 37,102,856 (-)Ensembl
ChiLan1.0NW_00495540537,093,330 - 37,102,789 (-)NCBIChiLan1.0ChiLan1.0
SYCP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,796,664 - 109,807,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,793,263 - 109,806,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,311,260 - 99,322,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,711,447 - 102,721,942 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,711,837 - 102,720,728 (-)EnsemblpanPan2panpan1.1
SYCP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,630,976 - 40,641,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,631,279 - 40,704,365 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1540,999,435 - 41,009,741 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01541,285,031 - 41,295,454 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,285,330 - 41,379,054 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,539,054 - 40,549,351 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,648,778 - 40,659,183 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,922,769 - 40,933,193 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sycp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,306,413 - 19,316,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,316,869 - 12,330,251 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,316,868 - 12,326,778 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYCP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,493,034 - 82,501,656 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1582,492,744 - 82,501,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,445,506 - 86,453,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYCP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,980,937 - 96,992,225 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037148,012,889 - 148,022,547 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sycp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,349,400 - 6,358,180 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247506,345,112 - 6,358,724 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sycp3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11167,538,791 - 167,549,316 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sycp3
57 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:22
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000007088
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 27 97 52 51 20 37 20 6 171 88 1 84 39 86 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000007088   ⟹   ENSRNOP00000007088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,761,552 - 24,775,932 (+)Ensembl
mRatBN7.2 Ensembl722,874,055 - 22,888,511 (+)Ensembl
Rnor_6.0 Ensembl729,029,263 - 29,044,251 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110230   ⟹   ENSRNOP00000097669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,761,463 - 24,776,501 (+)Ensembl
mRatBN7.2 Ensembl722,874,055 - 22,888,399 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119996   ⟹   ENSRNOP00000087777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,761,533 - 24,775,933 (+)Ensembl
mRatBN7.2 Ensembl722,874,112 - 22,888,511 (+)Ensembl
RefSeq Acc Id: NM_013041   ⟹   NP_037173
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,761,476 - 24,775,933 (+)NCBI
mRatBN7.2722,874,055 - 22,888,512 (+)NCBI
Rnor_6.0729,029,887 - 29,044,344 (+)NCBI
Rnor_5.0729,136,815 - 29,151,275 (+)NCBI
Celera720,034,097 - 20,048,375 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263030   ⟹   XP_063119100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,761,528 - 24,775,933 (+)NCBI
Protein Sequences
Protein RefSeqs NP_037173 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119100 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA53430 (Get FASTA)   NCBI Sequence Viewer  
  EDM17006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007088
  ENSRNOP00000007088.5
  ENSRNOP00000087777
GenBank Protein Q63520 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037173   ⟸   NM_013041
- UniProtKB: Q63520 (UniProtKB/Swiss-Prot),   A0A8I6GGD2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007088   ⟸   ENSRNOT00000007088
Ensembl Acc Id: ENSRNOP00000087777   ⟸   ENSRNOT00000119996
Ensembl Acc Id: ENSRNOP00000097669   ⟸   ENSRNOT00000110230
RefSeq Acc Id: XP_063119100   ⟸   XM_063263030
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GGD2 (UniProtKB/TrEMBL)
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63520-F1-model_v2 AlphaFold Q63520 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695127
Promoter ID:EPDNEW_R5652
Type:multiple initiation site
Name:Sycp3_1
Description:synaptonemal complex protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0729,029,939 - 29,029,999EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3795 AgrOrtholog
BioCyc Gene G2FUF-34510 BioCyc
Ensembl Genes ENSRNOG00000005270 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007088 ENTREZGENE
  ENSRNOT00000007088.7 UniProtKB/Swiss-Prot
  ENSRNOT00000119996 ENTREZGENE
InterPro XLR/SYCP3 UniProtKB/Swiss-Prot
  XLR/SYCP3/FAM9_dom UniProtKB/Swiss-Prot
KEGG Report rno:25561 UniProtKB/Swiss-Prot
NCBI Gene 25561 ENTREZGENE
PANTHER SYNAPTONEMAL COMPLEX PROTEIN 3 UniProtKB/Swiss-Prot
  XLR/SCP3/FAM9 UniProtKB/Swiss-Prot
Pfam Cor1 UniProtKB/Swiss-Prot
PhenoGen Sycp3 PhenoGen
RatGTEx ENSRNOG00000005270 RatGTEx
UniProt A0A8I6AVA6_RAT UniProtKB/TrEMBL
  A0A8I6GGD2 ENTREZGENE, UniProtKB/TrEMBL
  A6IFP2_RAT UniProtKB/TrEMBL
  Q63520 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-12 Sycp3  synaptonemal complex protein 3  LOC100362033  synaptonemal complex protein 3-like  Data merged from RGD:2318947 737654 PROVISIONAL
2010-05-05 LOC100362033  synaptonemal complex protein 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Sycp3  Synaptonemal complex protein 3      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains predicted protein contains potential nucleotide binding site, and stretches that may be able to form coiled-coil structures 730013
gene_expression gene is transcribed exclusively in testis in the male 730013
gene_protein predicted protein masses 29.7 kDa 730013