Spt1 (salivary protein 1) - Rat Genome Database

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Gene: Spt1 (salivary protein 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Spt1
Name: salivary protein 1
RGD ID: 3754
Description: INTERACTS WITH ammonium chloride; bexarotene; Cuprizon
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,908,216 - 136,918,249 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7136,908,216 - 136,918,191 (-)EnsemblGRCr8
mRatBN7.27134,914,177 - 134,924,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,821,750 - 134,832,353 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7134,914,177 - 134,924,157 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7136,578,227 - 136,588,888 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,807,620 - 138,818,281 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,899,857 - 138,909,904 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07145,325,004 - 145,338,152 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7145,325,004 - 145,338,152 (-)Ensemblrn6Rnor6.0
Rnor_5.07143,110,487 - 143,121,405 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47142,745,352 - 142,756,937 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.17142,825,540 - 142,837,126 (-)NCBI
Cytogenetic Map7q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rapid evolution of variants in a rodent multigene family encoding salivary proteins. Dickinson DP, etal., Mol Biol Evol 1989 Jan;6(1):80-102.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:81
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000055268
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7135371291137014596Rat

Markers in Region
BI284004  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27134,830,611 - 134,831,557 (+)MAPPERmRatBN7.2
mRatBN7.27134,922,426 - 134,923,375 (+)MAPPERmRatBN7.2
Rnor_6.07145,574,251 - 145,575,199NCBIRnor6.0
Rnor_6.07145,336,371 - 145,337,319NCBIRnor6.0
Rnor_5.07143,353,506 - 143,354,454UniSTSRnor5.0
Rnor_5.07143,119,624 - 143,120,572UniSTSRnor5.0
RGSC_v3.47142,755,156 - 142,756,104UniSTSRGSC3.4
RH 3.4 Map71065.0UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1 1 38 15 12 2 5 2 2 14 8 35 3 36 10 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000055268   ⟹   ENSRNOP00000052143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7145,325,004 - 145,338,152 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074622   ⟹   ENSRNOP00000066140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7136,908,216 - 136,918,191 (-)Ensembl
mRatBN7.2 Ensembl7134,914,177 - 134,924,157 (-)Ensembl
RefSeq Acc Id: NM_019171   ⟹   NP_062044
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,908,216 - 136,918,249 (-)NCBI
mRatBN7.27134,914,177 - 134,924,215 (-)NCBI
Rnor_6.07145,325,004 - 145,338,152 (-)NCBI
Rnor_5.07143,110,487 - 143,121,405 (-)NCBI
RGSC_v3.47142,745,352 - 142,756,937 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062044 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42174 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052143.2
  ENSRNOP00000066140
  ENSRNOP00000066140.2
  ENSRNOP00000103003.1
RefSeq Acc Id: NP_062044   ⟸   NM_019171
- Peptide Label: precursor
- UniProtKB: M0R9H2 (UniProtKB/TrEMBL),   E9PU79 (UniProtKB/TrEMBL),   Q63557 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052143   ⟸   ENSRNOT00000055268
Ensembl Acc Id: ENSRNOP00000066140   ⟸   ENSRNOT00000074622

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R9H2-F1-model_v2 AlphaFold M0R9H2 1-91 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3754 AgrOrtholog
BioCyc Gene G2FUF-31855 BioCyc
Ensembl Genes ENSRNOG00000036825 Ensembl
  ENSRNOG00000064464 Ensembl
  ENSRNOG00000066132 Ensembl
  ENSRNOG00000075505 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000079271 UniProtKB/TrEMBL
  ENSRNOG00000083781 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055268.5 UniProtKB/TrEMBL
  ENSRNOT00000074622 ENTREZGENE
  ENSRNOT00000074622.3 UniProtKB/TrEMBL
  ENSRNOT00000146311.1 UniProtKB/TrEMBL
KEGG Report rno:29229 UniProtKB/TrEMBL
NCBI Gene 29229 ENTREZGENE
PhenoGen Spt1 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036825 RatGTEx
  ENSRNOG00000064464 RatGTEx
  ENSRNOG00000066132 RatGTEx
  ENSRNOG00000075505 RatGTEx
  ENSRNOG00000079271 RatGTEx
  ENSRNOG00000083781 RatGTEx
TIGR TC228723
UniProt E9PU79 ENTREZGENE, UniProtKB/TrEMBL
  M0R9H2 ENTREZGENE
  Q63557 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary M0R9H2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Spt1  salivary protein 1    salivary protein 1   Name updated 1299863 APPROVED
2002-06-10 Spt1  salivary protein 1       Name updated 70584 APPROVED