Scamp1 (secretory carrier membrane protein 1) - Rat Genome Database

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Gene: Scamp1 (secretory carrier membrane protein 1) Rattus norvegicus
Analyze
Symbol: Scamp1
Name: secretory carrier membrane protein 1
RGD ID: 3625
Description: Enables protein domain specific binding activity. Involved in endocytosis. Located in clathrin-coated vesicle. Is active in synaptic vesicle membrane. Orthologous to human SCAMP1 (secretory carrier membrane protein 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SCAMP 37; secretory carrier-associated membrane protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,168,863 - 27,251,637 (-)NCBIGRCr8
mRatBN7.2225,433,958 - 25,516,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,433,959 - 25,516,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,462,075 - 32,546,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,562,340 - 30,646,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0225,386,298 - 25,470,239 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,858,021 - 23,941,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,857,995 - 23,941,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0243,029,910 - 43,112,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,495,965 - 24,586,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1224,417,965 - 24,507,158 (-)NCBI
Celera221,507,437 - 21,588,695 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-bromohexadecanoic acid  (ISO)
2-methylcholine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
fenthion  (ISO)
finasteride  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(II) chloride  (ISO)
metformin  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulindac  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The SNARE Vti1a-beta is localized to small synaptic vesicles and participates in a novel SNARE complex. Antonin W, etal., J Neurosci 2000 Aug 1;20(15):5724-32.
2. SCAMP 37, a new marker within the general cell surface recycling system. Brand SH and Castle JD, EMBO J 1993 Oct;12(10):3753-61.
3. Novel SCAMPs lacking NPF repeats: ubiquitous and synaptic vesicle-specific forms implicate SCAMPs in multiple membrane-trafficking functions. Fernandez-Chacon R and Sudhof TC, J Neurosci 2000 Nov 1;20(21):7941-50.
4. SCAMP1 function in endocytosis. Fernandez-Chacon R, etal., J Biol Chem 2000 Apr 28;275(17):12752-6.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
Additional References at PubMed
PMID:10551807   PMID:12192047   PMID:12477932   PMID:12490950   PMID:15840657   PMID:16105885   PMID:18171723   PMID:18706977   PMID:21272170   PMID:22871113   PMID:29476059  


Genomics

Comparative Map Data
Scamp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,168,863 - 27,251,637 (-)NCBIGRCr8
mRatBN7.2225,433,958 - 25,516,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,433,959 - 25,516,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,462,075 - 32,546,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,562,340 - 30,646,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0225,386,298 - 25,470,239 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,858,021 - 23,941,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,857,995 - 23,941,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0243,029,910 - 43,112,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,495,965 - 24,586,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1224,417,965 - 24,507,158 (-)NCBI
Celera221,507,437 - 21,588,695 (-)NCBICelera
Cytogenetic Map2q12NCBI
SCAMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38578,360,617 - 78,480,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl578,360,611 - 78,480,739 (+)EnsemblGRCh38hg38GRCh38
GRCh37577,656,441 - 77,776,562 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36577,692,095 - 77,812,318 (+)NCBINCBI36Build 36hg18NCBI36
Build 34577,692,109 - 77,810,634NCBI
Celera573,549,557 - 73,669,746 (+)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef572,862,994 - 72,983,412 (+)NCBIHuRef
CHM1_1577,089,800 - 77,209,865 (+)NCBICHM1_1
T2T-CHM13v2.0578,842,266 - 78,962,217 (+)NCBIT2T-CHM13v2.0
Scamp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,337,818 - 94,422,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1394,337,818 - 94,422,365 (-)EnsemblGRCm39 Ensembl
GRCm381394,201,310 - 94,285,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,201,310 - 94,285,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371394,971,388 - 95,055,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361395,302,187 - 95,385,980 (-)NCBIMGSCv36mm8
Celera1397,823,776 - 97,903,581 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1349.22NCBI
Scamp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,564,978 - 22,686,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,562,336 - 22,686,661 (-)NCBIChiLan1.0ChiLan1.0
SCAMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2436,826,248 - 36,948,208 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1534,979,875 - 35,101,829 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0536,829,770 - 36,951,827 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1537,318,534 - 37,440,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl537,316,593 - 37,439,785 (-)Ensemblpanpan1.1panPan2
SCAMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,296,229 - 28,417,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl328,274,205 - 28,417,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,537,222 - 29,659,052 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,219,559 - 28,341,457 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl328,219,561 - 28,341,444 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1328,155,981 - 28,277,572 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0328,134,141 - 28,255,794 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0328,461,468 - 28,583,360 (-)NCBIUU_Cfam_GSD_1.0
Scamp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,468,493 - 184,567,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365496,291,151 - 6,391,952 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365496,291,063 - 6,389,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,210,846 - 87,316,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,210,839 - 87,313,520 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,980,416 - 89,058,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1472,613,178 - 72,731,614 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl472,613,197 - 72,733,884 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604921,453,862 - 21,579,432 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scamp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248692,897,643 - 2,985,798 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248692,897,533 - 2,985,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scamp1
474 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:927
Count of miRNA genes:335
Interacting mature miRNAs:456
Transcripts:ENSRNOT00000014602
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat

Markers in Region
RH136851  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,435,659 - 25,435,875 (+)MAPPERmRatBN7.2
Rnor_6.0223,859,723 - 23,859,938NCBIRnor6.0
Rnor_5.0243,031,612 - 43,031,827UniSTSRnor5.0
RGSC_v3.4224,497,667 - 24,497,882UniSTSRGSC3.4
Celera221,509,139 - 21,509,354UniSTS
Cytogenetic Map2q12UniSTS
RH126839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,501,662 - 25,501,882 (+)MAPPERmRatBN7.2
mRatBN7.279,319,929 - 9,320,149 (+)MAPPERmRatBN7.2
Rnor_6.0223,926,119 - 23,926,338NCBIRnor6.0
Rnor_6.0712,186,015 - 12,186,234NCBIRnor6.0
Rnor_5.0712,356,070 - 12,356,289UniSTSRnor5.0
Rnor_5.0243,097,162 - 43,097,381UniSTSRnor5.0
RGSC_v3.4224,571,860 - 24,572,079UniSTSRGSC3.4
RGSC_v3.4710,831,227 - 10,831,446UniSTSRGSC3.4
Celera77,498,632 - 7,498,851UniSTS
Celera221,573,686 - 21,573,905UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map2q12UniSTS
RH132413  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,434,124 - 25,434,316 (+)MAPPERmRatBN7.2
Rnor_6.0223,858,188 - 23,858,379NCBIRnor6.0
Rnor_5.0243,030,077 - 43,030,268UniSTSRnor5.0
RGSC_v3.4224,496,132 - 24,496,323UniSTSRGSC3.4
Celera221,507,604 - 21,507,795UniSTS
Cytogenetic Map2q12UniSTS
RH133854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,501,655 - 25,501,870 (+)MAPPERmRatBN7.2
mRatBN7.279,319,922 - 9,320,137 (+)MAPPERmRatBN7.2
Rnor_6.0223,926,112 - 23,926,326NCBIRnor6.0
Rnor_6.0712,186,008 - 12,186,222NCBIRnor6.0
Rnor_5.0712,356,063 - 12,356,277UniSTSRnor5.0
Rnor_5.0243,097,155 - 43,097,369UniSTSRnor5.0
RGSC_v3.4224,571,853 - 24,572,067UniSTSRGSC3.4
RGSC_v3.4710,831,220 - 10,831,434UniSTSRGSC3.4
Celera77,498,625 - 7,498,839UniSTS
Celera221,573,679 - 21,573,893UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map2q12UniSTS
Mbd3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,501,527 - 25,501,865 (+)MAPPERmRatBN7.2
mRatBN7.279,319,794 - 9,320,132 (+)MAPPERmRatBN7.2
Rnor_6.0223,925,984 - 23,926,321NCBIRnor6.0
Rnor_6.0712,185,880 - 12,186,217NCBIRnor6.0
Rnor_5.0712,355,935 - 12,356,272UniSTSRnor5.0
Rnor_5.0243,097,027 - 43,097,364UniSTSRnor5.0
RGSC_v3.4224,571,725 - 24,572,062UniSTSRGSC3.4
RGSC_v3.4710,831,092 - 10,831,429UniSTSRGSC3.4
Celera77,498,497 - 7,498,834UniSTS
Celera221,573,551 - 21,573,888UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000084044   ⟹   ENSRNOP00000070553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,433,959 - 25,516,673 (-)Ensembl
Rnor_6.0 Ensembl223,860,517 - 23,909,016 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084729   ⟹   ENSRNOP00000071856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,433,959 - 25,516,673 (-)Ensembl
Rnor_6.0 Ensembl223,857,995 - 23,941,084 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093847   ⟹   ENSRNOP00000086247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,433,959 - 25,516,586 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111881   ⟹   ENSRNOP00000087816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,433,959 - 25,484,860 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115933   ⟹   ENSRNOP00000096839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,433,959 - 25,484,860 (-)Ensembl
RefSeq Acc Id: NM_001100636   ⟹   NP_001094106
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,168,863 - 27,251,567 (-)NCBI
mRatBN7.2225,433,958 - 25,516,673 (-)NCBI
Rnor_6.0223,858,021 - 23,941,128 (-)NCBI
Rnor_5.0243,029,910 - 43,112,204 (-)NCBI
RGSC_v3.4224,495,965 - 24,586,869 (-)RGD
Celera221,507,437 - 21,588,695 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102028   ⟹   XP_038957956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,168,863 - 27,251,612 (-)NCBI
mRatBN7.2225,433,958 - 25,516,734 (-)NCBI
RefSeq Acc Id: XM_039102030   ⟹   XP_038957958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,168,863 - 27,251,637 (-)NCBI
mRatBN7.2225,433,958 - 25,516,734 (-)NCBI
RefSeq Acc Id: XM_039102031   ⟹   XP_038957959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,168,863 - 27,213,635 (-)NCBI
mRatBN7.2225,433,958 - 25,478,734 (-)NCBI
RefSeq Acc Id: NP_001094106   ⟸   NM_001100636
- UniProtKB: P56603 (UniProtKB/Swiss-Prot),   A0A0G2JY82 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071856   ⟸   ENSRNOT00000084729
Ensembl Acc Id: ENSRNOP00000070553   ⟸   ENSRNOT00000084044
RefSeq Acc Id: XP_038957956   ⟸   XM_039102028
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1V6 (UniProtKB/TrEMBL),   Q5D009 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957958   ⟸   XM_039102030
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K1I6 (UniProtKB/TrEMBL),   A6I4W5 (UniProtKB/TrEMBL),   A0A8I6ARE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957959   ⟸   XM_039102031
- Peptide Label: isoform X3
- UniProtKB: Q5D009 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086247   ⟸   ENSRNOT00000093847
Ensembl Acc Id: ENSRNOP00000087816   ⟸   ENSRNOT00000111881
Ensembl Acc Id: ENSRNOP00000096839   ⟸   ENSRNOT00000115933

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56603-F1-model_v2 AlphaFold P56603 1-338 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691072
Promoter ID:EPDNEW_R1596
Type:initiation region
Name:Scamp1_1
Description:secretory carrier membrane protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0223,941,158 - 23,941,218EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3625 AgrOrtholog
BIND 130893
  130895
  130899
  130900
BioCyc Gene G2FUF-54831 BioCyc
Ensembl Genes ENSRNOG00000061582 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055003980 UniProtKB/Swiss-Prot
  ENSRNOG00060029894 UniProtKB/Swiss-Prot
  ENSRNOG00065023663 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000084044 UniProtKB/TrEMBL
  ENSRNOT00000084044.2 UniProtKB/Swiss-Prot
  ENSRNOT00000084729.2 UniProtKB/TrEMBL
  ENSRNOT00000093847.1 UniProtKB/TrEMBL
  ENSRNOT00000111881.1 UniProtKB/TrEMBL
  ENSRNOT00000115933.1 UniProtKB/TrEMBL
  ENSRNOT00055006356 UniProtKB/Swiss-Prot
  ENSRNOT00060051958 UniProtKB/Swiss-Prot
  ENSRNOT00065040557 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110675 IMAGE-MGC_LOAD
InterPro SCAMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29521 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105838 IMAGE-MGC_LOAD
NCBI Gene 29521 ENTREZGENE
PANTHER PTHR10687 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCAMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Scamp1 PhenoGen
RatGTEx ENSRNOG00000061582 RatGTEx
  ENSRNOG00055003980 RatGTEx
  ENSRNOG00060029894 RatGTEx
  ENSRNOG00065023663 RatGTEx
UniProt A0A0G2JY82 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K1I6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1V6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARE5 ENTREZGENE, UniProtKB/TrEMBL
  A6I4W5 ENTREZGENE, UniProtKB/TrEMBL
  P56603 ENTREZGENE
  Q5D009 ENTREZGENE, UniProtKB/TrEMBL
  SCAM1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Scamp1  secretory carrier membrane protein 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction binds gamma-synergin and intersectin 1 631946