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Gene: Ros1 (ROS proto-oncogene 1 , receptor tyrosine kinase) Rattus norvegicus

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Symbol:

Ros1

Name:

ROS proto-oncogene 1 , receptor tyrosine kinase

RGD ID:

3591

Description:

Predicted to enable protein phosphatase binding activity and transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in several processes, including columnar/cuboidal epithelial cell development; protein phosphorylation; and regulation of intracellular signal transduction. Predicted to act upstream of or within several processes, including negative regulation of gene expression; regulation of phosphate transport; and signal transduction. Predicted to be located in cell surface and perinuclear region of cytoplasm. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Orthologous to human ROS1 (ROS proto-oncogene 1, receptor tyrosine kinase); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

c-ros oncogene 1 , receptor tyrosine kinase; c-Ros receptor tyrosine kinase; c-ros-1; heart - derived c - ros - 1 proto - oncogene; LOC103694423; proto-oncogene c-Ros; proto-oncogene c-Ros-1; proto-oncogene tyrosine-protein kinase ROS; proto-oncogene tyrosine-protein kinase ROS-like; Rat heart - derived c - ros - 1 proto - oncogene; receptor tyrosine kinase c-ros oncogene 1; Ros1 proto-oncogene; ROS1C; v-ros UR2 sarcoma virus oncogene homolog 1; v-ros UR2 sarcoma virus oncogene homolog 1 (avian)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	31,975,328 - 32,126,675 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	31,975,329 - 32,126,547 (-)	Ensembl				GRCr8
mRatBN7.2	20	31,432,636 - 31,583,998 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	31,432,637 - 31,583,865 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	32,427,520 - 32,581,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	31,818,427 - 31,972,078 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	32,559,314 - 32,709,237 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	33,100,190 - 33,323,544 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	33,100,191 - 33,323,367 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	34,881,357 - 34,926,189 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	20	34,936,277 - 35,104,380 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	30,755,101 - 30,910,604 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	32,831,324 - 32,982,421 (-)	NCBI		Celera
RGSC_v3.1	20	30,768,900 - 30,924,404 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

high grade glioma (ISO)

lung adenocarcinoma (ISO)

lung non-small cell carcinoma (ISO)

lung sarcomatoid carcinoma (ISO)

melanoma (ISO)

spermatogenic failure 57 (ISO)

squamous cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine (EXP)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-acetamidofluorene (EXP)

2-ethoxyethanol (EXP)

2-methoxyethanol (EXP)

3-chloropropane-1,2-diol (EXP)

4-amino-2,6-dinitrotoluene (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

actinomycin D (ISO)

aflatoxin B1 (EXP,ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt atom (ISO)

copper(II) chloride (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDT (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (EXP)

dimethylarsinic acid (ISO)

diuron (EXP)

endosulfan (EXP)

ferric oxide (EXP)

flutamide (EXP)

genistein (EXP,ISO)

gentamycin (EXP)

glycidol (EXP)

ketoconazole (EXP)

lipopolysaccharide (ISO)

lorlatinib (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

methimazole (EXP)

methylarsonic acid (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-methyl-N'-nitro-N-nitrosoguanidine (EXP)

nefazodone (EXP)

nimesulide (EXP)

obeticholic acid (ISO)

ochratoxin A (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SCH 23390 (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

tolcapone (EXP)

topotecan (EXP)

valdecoxib (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA,ISO,ISS)

cell surface receptor protein tyrosine kinase signaling pathway (IBA)

columnar/cuboidal epithelial cell development (IEA,ISO,ISS)

gene expression (ISO)

negative regulation of gene expression (ISO)

peptidyl-tyrosine autophosphorylation (ISO)

protein phosphorylation (ISO,ISS)

regulation of cell growth (ISO,ISS)

regulation of ERK1 and ERK2 cascade (IEA,ISO,ISS)

regulation of intracellular signal transduction (IEA)

regulation of phosphate transport (ISO)

regulation of TOR signaling (IBA,ISO,ISS)

signal transduction (ISO)

spermatogenesis (ISO,ISS)

Cellular Component

cell surface (IEA,ISO)

perinuclear region of cytoplasm (IEA,ISO)

plasma membrane (IBA,IEA)

receptor complex (IBA)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein phosphatase binding (IEA,ISO)

protein tyrosine kinase activity (IEA,ISO,ISS)

transferase activity (IEA)

transmembrane receptor protein tyrosine kinase activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Tissue-specific expression of rat c-ros-1 gene and partial structural similarity of its predicted products with sev protein of Drosophila melanogaster.	Matsushime H and Shibuya M, J Virol 1990 May;64(5):2117-25.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	The G protein-coupled receptor CL1 interacts directly with proteins of the Shank family.	Tobaben S, etal., J Biol Chem 2000 Nov 17;275(46):36204-10.

Additional References at PubMed

PMID:7854358	PMID:7970722	PMID:8675006	PMID:11266449	PMID:12773415	PMID:16885344	PMID:17187413	PMID:28770648

Genomics

Comparative Map Data

Ros1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	31,975,328 - 32,126,675 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	31,975,329 - 32,126,547 (-)	Ensembl				GRCr8
mRatBN7.2	20	31,432,636 - 31,583,998 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	31,432,637 - 31,583,865 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	32,427,520 - 32,581,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	31,818,427 - 31,972,078 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	32,559,314 - 32,709,237 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	33,100,190 - 33,323,544 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	33,100,191 - 33,323,367 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	34,881,357 - 34,926,189 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	20	34,936,277 - 35,104,380 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	30,755,101 - 30,910,604 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	32,831,324 - 32,982,421 (-)	NCBI		Celera
RGSC_v3.1	20	30,768,900 - 30,924,404 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

ROS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	117,287,353 - 117,425,942 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	117,287,353 - 117,425,942 (-)	Ensembl			hg38	GRCh38
GRCh37	6	117,608,516 - 117,747,105 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	117,716,223 - 117,853,711 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	117,716,222 - 117,853,711	NCBI
Celera	6	118,352,446 - 118,489,916 (-)	NCBI		Celera
Cytogenetic Map	6	q22.1	NCBI
HuRef	6	115,189,890 - 115,327,310 (-)	NCBI		HuRef
CHM1_1	6	117,873,670 - 118,011,105 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	118,471,267 - 118,609,847 (-)	NCBI		T2T-CHM13v2.0

Ros1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	51,920,959 - 52,071,494 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	51,921,817 - 52,071,340 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	52,044,863 - 52,195,398 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	52,045,721 - 52,195,244 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	51,765,732 - 51,915,050 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	51,734,341 - 51,883,659 (-)	NCBI		MGSCv36	mm8
Celera	10	52,882,450 - 53,031,104 (-)	NCBI		Celera
Cytogenetic Map	10	B3	NCBI
cM Map	10	26.18	NCBI

Ros1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	524,854 - 636,338 (-)	Ensembl
ChiLan1.0	NW_004955436	528,038 - 636,194 (-)	NCBI	ChiLan1.0	ChiLan1.0

ROS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	137,301,307 - 137,440,050 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	135,194,174 - 135,333,045 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	115,095,753 - 115,234,525 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	119,238,419 - 119,376,053 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	119,238,419 - 119,376,053 (-)	Ensembl			panPan2	panpan1.1

ROS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	57,555,278 - 57,677,541 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	57,555,989 - 57,677,761 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	58,350,186 - 58,478,059 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	57,737,166 - 57,858,909 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	57,737,370 - 57,859,071 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	57,631,666 - 57,759,473 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	57,479,365 - 57,601,402 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	58,114,541 - 58,232,431 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ros1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	108,274,580 - 108,400,196 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936658	382,261 - 506,818 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936658	382,025 - 506,818 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ROS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	44,410,351 - 44,534,874 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	44,409,877 - 44,535,784 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	49,755,363 - 49,864,460 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ROS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	56,412,451 - 56,561,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	56,413,298 - 56,562,503 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	28,749,526 - 28,898,180 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ros1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624798	12,339,446 - 12,449,316 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ros1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	29,334,962 - 29,413,371 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ros1
1460 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	369
Count of miRNA genes:	220
Interacting mature miRNAs:	245
Transcripts:	ENSRNOT00000000459
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

RH94709

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	31,583,627 - 31,583,826 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	33,323,130 - 33,323,328	NCBI	Rnor6.0
Rnor_5.0	20	35,104,143 - 35,104,341	UniSTS	Rnor5.0
RGSC_v3.4	20	30,910,367 - 30,910,565	UniSTS	RGSC3.4
Celera	20	32,982,184 - 32,982,382	UniSTS
Cytogenetic Map	20	q11	UniSTS

RH94708

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	31,432,757 - 31,432,914 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	33,100,312 - 33,100,468	NCBI	Rnor6.0
Rnor_5.0	20	34,881,478 - 34,881,634	UniSTS	Rnor5.0
RGSC_v3.4	20	30,755,222 - 30,755,378	UniSTS	RGSC3.4
Celera	20	32,831,445 - 32,831,601	UniSTS
Cytogenetic Map	20	q11	UniSTS

RH140879

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	20	34,963,739 - 34,963,958	NCBI	Rnor5.0
Rnor_5.0	8	40,115,679 - 40,115,898	NCBI	Rnor5.0
Rnor_5.0	20	34,957,843 - 34,958,062	NCBI	Rnor5.0
RGSC_v3.4	20	30,831,872 - 30,832,090	UniSTS	RGSC3.4
RGSC_v3.4	8	38,890,794 - 38,891,012	UniSTS	RGSC3.4
Celera	20	32,905,365 - 32,905,583	UniSTS
Celera	8	37,099,823 - 37,100,041	UniSTS
RH 3.4 Map	8	344.3	UniSTS
Cytogenetic Map	20	q11	UniSTS
Cytogenetic Map	8	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	61	77	76	75	49	34	49	6	282	128	11	48	81	58	26	3	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_012874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M35104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M35105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M35106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000459 ⟹ ENSRNOP00000000459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	31,975,329 - 32,126,547 (-)	Ensembl
mRatBN7.2 Ensembl	20	31,432,637 - 31,583,865 (-)	Ensembl
Rnor_6.0 Ensembl	20	33,100,678 - 33,322,966 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080444 ⟹ ENSRNOP00000068996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	31,975,329 - 32,126,547 (-)	Ensembl
mRatBN7.2 Ensembl	20	31,432,637 - 31,583,865 (-)	Ensembl
Rnor_6.0 Ensembl	20	33,100,191 - 33,323,367 (-)	Ensembl

RefSeq Acc Id:

NM_012874 ⟹ NP_037006

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,975,329 - 32,126,547 (-)	NCBI
mRatBN7.2	20	31,432,637 - 31,583,865 (-)	NCBI
Rnor_6.0	20	33,100,191 - 33,323,367 (-)	NCBI
Rnor_5.0	20	34,881,357 - 34,926,189 (-)	NCBI
Rnor_5.0	20	34,936,277 - 35,104,380 (-)	NCBI
RGSC_v3.4	20	30,755,101 - 30,910,604 (-)	RGD
Celera	20	32,831,324 - 32,982,421 (-)	RGD

Sequence:

show sequence

CATAGCTCAGCCAACCTCAAAGAAGTGCGGTGGCTGGCCGACCTGAGTGTTCTGCGTCAGGACT
GTGTGGACTGGCTCGCTGGAAAGCAATCTAAGTTCCTACTGCTTATTTTGCATGTGGAGAGCTC
TTCCACGATCTAGCCTTTAGCCAGGGAACGTCTTTCATTATGGGAGTAAAAGGAAGCTAAACTA
TAAAATAGTCTTGCTGCGATGTTCTGGGCTATCTGAGATCCAAAGGTCTAAACCGGTTTCAATA
AGAGAGTACGATATTCTAACATCGCAAAAGAAAACAGATAACCCACCAAGCTCACTTGCAACCG
AAGTATGAAGCCTAAAGAATTGTTAAAGCAACATGGAGACATGAGGACGCCAGCCGTGTAGGAA
GCTGGCCTTCCTGAGGGATGAAGAGGATCCGCTGGCTCACCCCAAAACCTGCGACCTTTGTGGT
CCTTGGGTGCGTATGGATTTCCGTGGCGCAGGGTACCATTCTGAGCAGCTGCCTAACGTCCTGT
GTAACTAACTTGGGCAGGCAGCTTGACAGCGGCACCCGGTACAATCTGAGTGAGGCATGCATCC
AAGGATGTCAGTTTTGGAACTCTATAGATCAGGAGAAGTGTGCTTTGAAGTGTAATGATACATA
TGTCACCATTTGTGAGAGGGAGTCCTGTGAGGTCGGCTGCAGCAACGCGGAGGGTAGCTACGAA
GAGGAAGTGCTGGACAACACAGAGCTTCCTACAGCACCCTTCGCATCTTCCATTGGAAGTAACG
GGGTGACATTACGATGGAACCCTGCCAACATCTCTGGAGTAAAATACATCATTCAGTGGAAATA
TGCCCAACTTCCGGGAAGCTGGGCTTACACAGAAACTGTGTCTAAGCTCTCATACATGGTGGAA
CCCCTGCATCCATTTACTGAATATATTTTTCGAGTGGTTTGGATTTTCACAGCCCAGCTGCACC
TTTATTCCCCGCCAAGTCCCAGTTACAGGACTCATCCTTATGGAGTTCCAGAAACTGCGCCTTT
CATCACGAACATCGAAAGCTCGAGCCCTGACACTGTGGAGGTCAGCTGGGCTCCACCCTATTTC
CCAGGTGGACCTATTTTGGGTTATAATTTAAGGCTGATCAGTAAAACTCAAAAATTAGATTCAG
GGACACAGAGAACCAGTTTCCAGTTTTATTCTACTCTTCCAAACACCACTTACAGGTTTTCTAT
CGCAGCAGTCAATGAAGTCGGTGAGGGGCCAGAAGCAGAATCTATGATTACCACTCCATCCCCA
GCAGTTCAAGAAGAAGAACAATGGCTCTTTTTATCCAGAAAAACTTCTCTAAGAAAGAGGTCTT
TGAAGTACTTAGTAGACGAAGCACATTGCCTTTGGTCAGATGCTATACGTCATAATATTACAGG
AATATCAGTCAACACTCAGCAGGAAGTGGTTTATTTCTCAGAAGGAACCATCATATGGATGAAG
GGGGCTGCTAACATGTCTGATGTGTCTGACCTGAGGATCTTTTATCGAGGCTCAGCTCTAGTCT
CTTCTATCTCTGTAGACTGGCTTTACCAAAGGATGTATTTCATCATGGATAATCGGGTGCATGT
CTGTGACTTAAAGCATTGCTCAAATCTTGAGGAAATCACTCCATTCTCTATTGTTGCACCTCAA
AAAGTTGTGGTTGATTCCTACAATGGGTATGTCTTTTATCTCCTAAGAGACGGCATTTATAGAG
TCCATCTTCCTTTGCCGTCTGTCAGGGACACCAAAGCTGTGCGTATTGTGGAGAGTGGCACATT
AAAGGACTTCGCAGTAAAGCCGCAGTCCAAGCGAATCATTTACTTCAATGGCACCATGCAAGTC
TTCATGTCGACATTTCTGGATGGCTCGGCATTCCACAGGGTTCTGCCGTGGGTCCCCCTTGCGG
ATGTGAAGAGCTTTGCTTGTGAAAACAATGACTTCCTCATCACAGATGGCAAGGCCATTTTCCA
ACAGGACTCTCTGTCTTTCAATGAGTTCATCGTGGGATGTGACCTGAGTCACATAGAAGAATTT
GGGTTTGGTAACTTGGTCATCTTTGGCTCCTCCGTCCAGTCGTACCCTCTGCCAGGCCATCCAC
AGGAGGTCTCGGTGCTGTTTGGTTCTCGAGAGGCCCTTATTCAGTGGAAGCCTCCGATTCTCGC
CATAGGAGCCAGTCCTTCCGCCTGGCAGAACTGGACTTATGAGGTCAAAGTTTCCTCCCAGGAC
ATTCTGGAAACCACTCAAGTTTTCTTGAACATAAGCAGGACTGTGCTGAATGTACCCAAGCTGC
AAAGTTCTACAAAGTACATGGTGTCTGTGCGAGCAAGTTCTCCTAAAGGCCCAGGCCCATGGTC
AGAACCCTCAGTGGGTACTACCTTGGTACCAGCCACTGAGCCACCGTTCATCATGGCTGTGAAA
GAAGATGGGCTTTGGAGCAAACCACTCAGTAGTTTTGGCCCAGGAGAGTTCCTATCCTCTGACG
TAGGAAACGTGTCAGATATGGATTGGTATAACAACAGCCTCTACTACAGTGACACAAAAGGCAA
TGTGTATGTGCGGCCTCTGAATGGGATGGATATCTCGGAGAATTACCACATATCCAGCATTGCA
GGAGCTTGTGCCTTGGCCTTTGAATGGCTGGGTCACTTTCTCTACTGGGCTGGGAAGACATATG
TGATTCAAAGGCAGTCTGTGTTAACGGGACACACAGACATTGTGACTCACGTGAAGCTGTTGGT
GAATGACATGGCCGTGGATCCAGTTGGTGGCTATCTGTACTGGACGACGCTCTACTCGGTTGAA
AGCACCAGACTCAATGGAGAAAGTTCTCTTGTACTACAGGCTCAGCCCTGGCTCTCTGGAAAAA
AGGTTATTGCTCTAACATTAGACCTCAGCGATGGGCTCCTGTACTGGCTGGTGCAGGACAATCA
GTGTATTCACCTGTACACGGCTGTTCTCCGGGGATGGAGTGGTGCGGATGCTACCATCACCGAG
TTTGCAGCCTGGAGTACTTCTGAAATTTCCCAGAATGCACTGATGTACTACAGCGGTAGACTCT
TCTGGATCAATGGCTTTAGGATCATCACAGCACAGGAAATAGGTCAGAGAACCAGCGTGTCTGT
TTCTGAGCCAGGGAAATTCAATCAGTTTACGATCATACAGACATCCCTCAAGCCTCTGCCAGGG
AACTTTTCCTCTACTCCCACGGTTATCCCAGATTCTGTTCAGGAGTCCTCATTTCGAATTGAAG
GACACACTTCAAGTTTCCGAATCCTGTGGAATGAGCCCCCTGCGGTGGACTGGGGCATAGTTTT
CTACAGTGTGGAATTTAGTGCTCATTCTAAGTTCCTGGCTATTGAACAACAGTCTTTACCTGTT
TTTACTGTGGAAGGACTGGAGCCCTATGCCTTATTTAATCTTTCTGTCACTCCTTATACCTATT
GGGGAAAAGGTCAAAAAACATCTCTATCATTTCGAGCGCCTGAATCAGTTCCGTCAGCACCAGA
GAACCCCAGAATATTTATATTGTCACTTGGAAGATACACCAGGAAGAATGAAGTCGTGGTAGAG
TTTAGGTGGAATAAACCTAAGCATGAAAATGGAGTGCTAACCAAATCTGAAATCTTCTACCACA
TATCTAAACAAAGTGGCACAAATAAATCAACGGAAGACTGGGTATCTGTCAGCGTTACACCGCC
GGTGATGTCTTTTCAACTTGAAGCCATGAGTCCTGGGTATATTGTTTCCTTCCAGGTTCGAGTC
TTCACCTCCAAAGGGCCAGGACCATTTTCTGATATAGTGATGTCTAAAACATCAGAAATCAAGC
CATGTCCATATCTCATATCTCTTCTTGGCAATAAGATTGAGTTCTTAGACATGGACCAAAATCA
AGTTGTGTGGACATTTTCCCTGGAGGGAGCCGTCAGCACAGTGGGGTACACAGCGGATGATGAA
ATGGGGTATTTCGCTCAAGGAGATGCACTCTTCCTTCTGAATTTGCACAATCATTCCAGCTCCA
AGCTTTTCCAGGACGTGCTGGCTTCTGACATTGCGGTTATTGCTGTTGACTGGATCGCAAGGCA
CCTCTACTTTGCTCTGAAAGCATCGCAAGATGGAACACAGATATTCGATGTTGACCTTGAACAC
AAGGTGAAATCCCCCAGGGAGGTGAAGATTTGCAAAAGCCATACAGCAATAATTTCTTTCTCTA
TGTATCCCCTCTTAAGTCGCCTGTATTGGACAGAAGTTTCAGATCTGGGCTACCAGATGTTCTA
CTGCAATATTAGCAGTCACACCTTGCATCACGTTCTACAACCCAAGGCCTCAAACCAGCATGGA
AGGAGACAGTGTTCTTGTAATGTGACAGAATCCGAGTTAAGTGGGGCAATGACTGTGGACACGT
CTGATCCAGACAGACCTTGGATATACTTTACCAAACAGCAAGAGATCTGGGCCATGGATCTGGA
AGGATGTCAGTGTTGGAAAGTCATCATGGTACCTGCTACCCCTGGAAAAAGAATCATTAGTTTA
ACAGTGGATGGGGAGTTTATATATTGGATCACAACAATGAAGGACGACACAGAAATTTATCAAG
CAAAGAAGGGAAGTGGGGCCATCCTCTCCCAGGTGAAGGCCCCCAGGAGTAAGCATATCTTGGC
TTACAGTTCAGCTCTGCAACCTTTTCCAGATAAAGCATATCTGTCTGTAGCTTCCAATATGGTA
GAAGCAAGTATATTGAATGCCACCAACACCAGCCTCATTCTCAAGTTACCTCCAGTCAAGACAA
ACCTCACGTGGCATGGAATTACCACTCCCACGTCAACATACCTGGTTTACTATATGGAGGCTAA
TAGGGCAAACAGCTCTGACAGGAAACACAACATGTTGGAATCACAGGAGAATGTAGCCCGGATT
GAAGGTCTGCAGCCATTTTCAACATACGTGATTCAGATAGCTGTGAAGAACTATTATTCTGATC
CTTTAGAACATCTCTCTCTGGGAAAAGAGATTCAAGGAAAAACTAAAAGTGGAGTGCCCGGGGC
AGTTTGTCATATCAATGCAACTGTGCTGTCGGACACCAGTCTTCTTGTATTCTGGACAGAATCG
CATAAACCAAACGGACCCAAAGAGTTAGTCCGCTATCAGTTGGTTATGTCATACCTGGCTCCGA
TTCCTGAGACTCCTCTAAGACAGGACGAATTTCCAAGCGCCAGGCTTTCTCTACTTGTCACTAA
ACTCTCTGGTGGACAACAATATGTGCTGAAGATCCTTGCCTGCCACTCAGAGGAAATGTGGTGT
ACTGAGAGTCATCCTGTCAGTGTCAACATGTTTGACACACCGGAGAAACCTTCTGCCTTGGTTC
CAGAGAACACTAGTCTGCTGTTGGATTGGAAGGCTCCGTCTAACGCTAACCTCACCAGATTTTG
GTTTGAACTCCAGAAGTGGAAGTATAGTGAGTTTTACCATGTCAAGGCTTCATGCAGCCAAGGT
CCAGTTTATGTCTGTAACATCGCAAATCTGCAGCCTTACACTCCTTATAACATCCGAGTGGTGG
TGGTCTATACGACAGGAGAAAATAGCTCCTCGATTCCCGAGAGCTTCAAGACAAAAGCTGGAGT
CCCAAGCAAACCAGGGATTCCTAAGTTACTAGAAGGGAGTAAAAATTCAATCCAGTGGGAAAAA
GCCGAAGATAACGGGAACAGATTGATGTACTACACCCTGGAGGTCAGAAAAAGCATTTCAAATG
ACTCACGGGACCAGAGTTTAAGGTGGACGGCGGTGTTTAATGGGTCCTGCAGTAGCATTTGCAC
ATGGAGGTCAAAAAACCTAAAAGGAACTTTCCAGTTCAGAGCAGTAGCGTCAAATGCTATTGGA
TTTGGAGAATACAGTGAAATCAGTGAAGATATTACATTAGTGGAAGATGGTTTTTGGATAACAG
AAACAAGTTTTATACTTACTATCATAGTTGGGATATTTCTGGTTGCCACAGTCCCACTGACCTT
TGTCTGGCATAGAAGCTTGAAAAACCACAAAGCTACCAAGGAAGGCCTCTCAGTTCTCAACGAC
AATGACCAAGAGTTGGCTGAGCTTCGAGGACTGGCGGCTGGAGTGGGCCTGGCCAATGCCTGCT
ATGCAGTACATACTCTTCCAACCCAAGAGGAGATTGAAAGTCTTCCCGCCTTCCCTCGGGAGAA
GCTGAGCCTGCGCCTTCTGTTGGGAAGTGGAGCTTTTGGAGAAGTGTACGAGGGCACAGCTGTA
GACATCCTAGGACGGGGAAGTGGAGAAATCAAGGTGGCCGTGAAGACCCTGAAGAAAGGTTCGA
CAGACCAGGAGAAGATCGAGTTCCTGAAGGAGGCACACCTGATGAGCAAGTTTAATCACCCCAA
CATTCTGAAGCAGCTGGGAGTCTGTCTGCTGAGTGAACCCCAGTACATTATCCTGGAACTGATG
GAAGGGGGAGACCTTCTAAGCTATCTGCGCAAAGCCCGAGGGACAACGTTGTCTGGCCCTTTAC
TCACATTGGCTGACCTGGTAGAGCTGTGTGTAGATATTTCAAAAGGCTGCGTCTACTTGGAGCA
GATGCACTTCATTCACAGGGATCTGGCAGCTCGGAATTGCCTTGTGTCTGTGAAAGACTATACC
AGTCCTCGGGTAGTCAAGATCGGTGACTTTGGTTTGGCAAGGGAAATCTATAAGCATGATTATT
ATAGAAAGAGAGGGGAAGGCCTGCTTCCTGTCCGGTGGATGGCTCCTGAAAACTTGATGGATGG
AATCTTCACTTCCCAGTCTGATGTATGGTCTTTTGGAATTTTGGTTTGGGAGATTTTAACTCTT
GGTCATCAACCTTATCCAGCGCATTCCAACCTTGATGTTTTAAACTATGTGCAAGCAGGAGGGA
GACTGGAGCCACCGAGAAACTGTCCTGATGATCTGTGGAATTTAATGTTCCGATGTTGGGCCCA
AGAACCTGACCAAAGACCCACTTTCTATAACATTCAAGACCAGCTTCAGTTATTCAGAAATGTT
TCCTTAAACAATGTTTCTCACTGTGGACAAGCAGCTCCTGCTGGTGGAGTCATCAACAAAGGCT
TTGAAGGTGAAGACAATGAAATGGCCACTTTGAATTCAGATGACACGATGCCAGTTGCCTTGAT
GGAAACCAGGAACCAAGAAGGATTAAATTATATGGTACTTGCCACAAAGTGTAGCCAAAGTGAG
GATCGTTATGAGGGTCCTCTAGGCTCTAAGGAATCTGGGTTGCATGATCTGAAGAAAGACGAGA
GGCAACCAGCAGACAAAGATTTCTGCCAGCAACCACAGGTGGCTTATGGCTCTCCTGGCCACTC
TGAAGGCCTGAACTATGCCTGTCTTGCTCACAGTGGACATGGAGATGTGTCTGAATAATAGTAT
CTCATAGGAAACATAGCACTGAGATGAACACTGTATTAAGTTAAAAAGAAGAAAGGTGGGGTGG
CAGTCTAGACTCTGAACTGACACAGCCAAGTTCCAAAGTTCTGATCTTGGTTCCAAGAGCCATT
ATGTTTCATTCAGCATTCTCTTTACCAGTGACGTAACCTTCAGTGGATTATCAGAGGAACCTGT
GTGTGTGCGGAAATCCCAGGACAAATCCTAAGTCTGGGAAGAAAACATCACTGTCTCTCTCCTC
TGAAGCCCTTTACTTCAGAGCATTGCCTGCCCTGGCAATCTTACTAGGTTCATGCAAGGATGTG
AGTGGGGGAGGGGCCGGAGTCTGCTGAGGACCACCTGAACTACAGATTACCTTAAGAGGATGCA
GGAAACAATTACTCACACAGGAGGAAGCAGCCTGTGGACCATGAGGAATCATCTGGCACGCTAT
TATTCCAATAAAATATTCCCTTTAATCATC

hide sequence

RefSeq Acc Id:

XM_008772862 ⟹ XP_008771084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,975,328 - 32,126,672 (-)	NCBI
mRatBN7.2	20	31,432,637 - 31,583,865 (-)	NCBI
Rnor_6.0	20	33,100,190 - 33,323,544 (-)	NCBI

Sequence:

show sequence

CTTGCCCTCAGAGAACACGTCTAGTAGTTTTCAGCTTCTTTCGCTCTTTCAAAAAAAAAAAAAG
TGTTTGGTTTGAAAGTATTCCTATTTTCTTCTCTAACTCACTGCTTACTGTTAAGACTTCCAGT
TTTTAAAATAGTTATGAGATACGGTTTGCTAAGCAAACCCAACTTCCTGCATAGCTCAGCCAAC
CTCAAAGAAGTGCGGTGGCTGGCCGACCTGAGTGTTCTGCGTCAGGACTGTGTGGACTGGCTCG
CTGGAAAGCAATCTAAGTTCCTACTGCTTATTTTGCATGTGGAGAGCTCTTCCACGATCTAGCC
TTTAGCCAGGGAACGTCTTTCATTATGGGAGTAAAAGGAAGCTAAACTATAAAATAGTCTTGCT
GCGATGTTCTGGGCTATCTGAGATCCAAAGGTCTAAACCGGTTTCAATAAGAGAGTACGATATT
CTAACATCGCAAAAGAAAACAGATAACCCACCAAGCTCACTTGCAACCGAAGTATGAAGCCTAA
AGAATTGTTAAAGCAACATGGAGACATGAGGACGCCAGCCGTGTAGGAAGCTGGCCTTCCTGAG
GGATGAAGAGGATCCGCTGGCTCACCCCAAAACCTGCGACCTTTGTGGTCCTTGGGTGCGTATG
GATTTCCGTGGCGCAGGGTACCATTCTGAGCAGCTGCCTAACGTCCTGTGTAACTAACTTGGGC
AGGCAGCTTGACAGCGGCACCCGGTACAATCTGAGTGAGGCATGCATCCAAGGATGTCAGTTTT
GGAACTCTATAGATCAGGAGAAGTGTGCTTTGAAGTGTAATGATACATATGTCACCATTTGTGA
GAGGGAGTCCTGTGAGGTCGGCTGCAGCAACGCGGAGGGTAGCTACGAAGAGGAAGTGCTGGAC
AACACAGAGCTTCCTACAGCACCCTTCGCATCTTCCATTGGAAGTAACGGGGTGACATTACGAT
GGAACCCTGCCAACATCTCTGGAGTAAAATACATCATTCAGTGGAAATATGCCCAACTTCCGGG
AAGCTGGGCTTACACAGAAACTGTGTCTAAGCTCTCATACATGGTGGAACCCCTGCATCCATTT
ACTGAATATATTTTTCGAGTGGTTTGGATTTTCACAGCCCAGCTGCACCTTTATTCCCCGCCAA
GTCCCAGTTACAGGACTCATCCTTATGGAGTTCCAGAAACTGCGCCTTTCATCACGAACATCGA
AAGCTCGAGCCCTGACACTGTGGAGGTCAGCTGGGCTCCACCCTATTTCCCAGGTGGACCTATT
TTGGGTTATAATTTAAGGCTGATCAGTAAAACTCAAAAATTAGATTCAGGGACACAGAGAACCA
GTTTCCAGTTTTATTCTACTCTTCCAAACACCACTTACAGGTTTTCTATCGCAGCAGTCAATGA
AGTCGGTGAGGGGCCAGAAGCAGAATCTATGATTACCACTCCATCCCCAGCAGTTCAAGAAGAA
GAACAATGGCTCTTTTTATCCAGAAAAACTTCTCTAAGAAAGAGGTCTTTGAAGTACTTAGTAG
ACGAAGCACATTGCCTTTGGTCAGATGCTATACGTCATAATATTACAGGAATATCAGTCAACAC
TCAGCAGGAAGTGGTTTATTTCTCAGAAGGAACCATCATATGGATGAAGGGGGCTGCTAACATG
TCTGATGTGTCTGACCTGAGGATCTTTTATCGAGGCTCAGCTCTAGTCTCTTCTATCTCTGTAG
ACTGGCTTTACCAAAGGATGTATTTCATCATGGATAATCGGGTGCATGTCTGTGACTTAAAGCA
TTGCTCAAATCTTGAGGAAATCACTCCATTCTCTATTGTTGCACCTCAAAAAGTTGTGGTTGAT
TCCTACAATGGGGACACCAAAGCTGTGCGTATTGTGGAGAGTGGCACATTAAAGGACTTCGCAG
TAAAGCCGCAGTCCAAGCGAATCATTTACTTCAATGGCACCATGCAAGTCTTCATGTCGACATT
TCTGGATGGCTCGGCATTCCACAGGGTTCTGCCGTGGGTCCCCCTTGCGGATGTGAAGAGCTTT
GCTTGTGAAAACAATGACTTCCTCATCACAGATGGCAAGGCCATTTTCCAACAGGACTCTCTGT
CTTTCAATGAGTTCATCGTGGGATGTGACCTGAGTCACATAGAAGAATTTGGGTTTGGTAACTT
GGTCATCTTTGGCTCCTCCGTCCAGTCGTACCCTCTGCCAGGCCATCCACAGGAGGTCTCGGTG
CTGTTTGGTTCTCGAGAGGCCCTTATTCAGTGGAAGCCTCCGATTCTCGCCATAGGAGCCAGTC
CTTCCGCCTGGCAGAACTGGACTTATGAGGTCAAAGTTTCCTCCCAGGACATTCTGGAAACCAC
TCAAGTTTTCTTGAACATAAGCAGGACTGTGCTGAATGTACCCAAGCTGCAAAGTTCTACAAAG
TACATGGTGTCTGTGCGAGCAAGTTCTCCTAAAGGCCCAGGCCCATGGTCAGAACCCTCAGTGG
GTACTACCTTGGTACCAGCCACTGAGCCACCGTTCATCATGGCTGTGAAAGAAGATGGGCTTTG
GAGCAAACCACTCAGTAGTTTTGGCCCAGGAGAGTTCCTATCCTCTGACGTAGGAAACGTGTCA
GATATGGATTGGTATAACAACAGCCTCTACTACAGTGACACAAAAGGCAATGTGTATGTGCGGC
CTCTGAATGGGATGGATATCTCGGAGAATTACCACATATCCAGCATTGCAGGAGCTTGTGCCTT
GGCCTTTGAATGGCTGGGTCACTTTCTCTACTGGGCTGGGAAGACATATGTGATTCAAAGGCAG
TCTGTGTTAACGGGACACACAGACATTGTGACTCACGTGAAGCTGTTGGTGAATGACATGGCCG
TGGATCCAGTTGGTGGCTATCTGTACTGGACGACGCTCTACTCGGTTGAAAGCACCAGACTCAA
TGGAGAAAGTTCTCTTGTACTACAGGCTCAGCCCTGGCTCTCTGGAAAAAAGGTTATTGCTCTA
ACATTAGACCTCAGCGATGGGCTCCTGTACTGGCTGGTGCAGGACAATCAGTGTATTCACCTGT
ACACGGCTGTTCTCCGGGGATGGAGTGGTGCGGATGCTACCATCACCGAGTTTGCAGCCTGGAG
TACTTCTGAAATTTCCCAGAATGCACTGATGTACTACAGCGGTAGACTCTTCTGGATCAATGGC
TTTAGGATCATCACAGCACAGGAAATAGGTCAGAGAACCAGCGTGTCTGTTTCTGAGCCAGGGA
AATTCAATCAGTTTACGATCATACAGACATCCCTCAAGCCTCTGCCAGGGAACTTTTCCTCTAC
TCCCACGGTTATCCCAGATTCTGTTCAGGAGTCCTCATTTCGAATTGAAGGACACACTTCAAGT
TTCCGAATCCTGTGGAATGAGCCCCCTGCGGTGGACTGGGGCATAGTTTTCTACAGTGTGGAAT
TTAGTGCTCATTCTAAGTTCCTGGCTATTGAACAACAGTCTTTACCTGTTTTTACTGTGGAAGG
ACTGGAGCCCTATGCCTTATTTAATCTTTCTGTCACTCCTTATACCTATTGGGGAAAAGGTCAA
AAAACATCTCTATCATTTCGAGCGCCTGAATCAGTTCCGTCAGCACCAGAGAACCCCAGAATAT
TTATATTGTCACTTGGAAGATACACCAGGAAGAATGAAGTCGTGGTAGAGTTTAGGTGGAATAA
ACCTAAGCATGAAAATGGAGTGCTAACCAAATCTGAAATCTTCTACCACATATCTAAACAAAGT
GGCACAAATAAATCAACGGAAGACTGGGTATCTGTCAGCGTTACACCGCCGGTGATGTCTTTTC
AACTTGAAGCCATGAGTCCTGGGTATATTGTTTCCTTCCAGGTTCGAGTCTTCACCTCCAAAGG
GCCAGGACCATTTTCTGATATAGTGATGTCTAAAACATCAGAAATCAAGCCATGTCCATATCTC
ATATCTCTTCTTGGCAATAAGATTGAGTTCTTAGACATGGACCAAAATCAAGTTGTGTGGACAT
TTTCCCTGGAGGGAGCCGTCAGCACAGTGGGGTACACAGCGGATGATGAAATGGGGTATTTCGC
TCAAGGAGATGCACTCTTCCTTCTGAATTTGCACAATCATTCCAGCTCCAAGCTTTTCCAGGAC
GTGCTGGCTTCTGACATTGCGGTTATTGCTGTTGACTGGATCGCAAGGCACCTCTACTTTGCTC
TGAAAGCATCGCAAGATGGAACACAGATATTCGATGTTGACCTTGAACACAAGGTGAAATCCCC
CAGGGAGGTGAAGATTTGCAAAAGCCATACAGCAATAATTTCTTTCTCTATGTATCCCCTCTTA
AGTCGCCTGTATTGGACAGAAGTTTCAGATCTGGGCTACCAGATGTTCTACTGCAATATTAGCA
GTCACACCTTGCATCACGTTCTACAACCCAAGGCCTCAAACCAGCATGGAAGGAGACAGTGTTC
TTGTAATGTGACAGAATCCGAGTTAAGTGGGGCAATGACTGTGGACACCTCTGATCCAGACAGA
CCTTGGATATACTTTACCAAACAGCAAGAGATCTGGGCCATGGATCTGGAAGGATGTCAGTGTT
GGAAAGTCATCATGGTACCTGCTACCCCTGGAAAAAGAATCATTAGTTTAACAGTGGATGGGGA
GTTTATATATTGGATCACAACAATGAAGGACGACACAGAAATTTATCAAGCAAAGAAGGGAAGT
GGGGCCATCCTCTCCCAGGTGAAGGCCCCCAGGAGTAAGCATATCTTGGCTTACAGTTCAGCTC
TGCAACCTTTTCCAGATAAAGCATATCTGTCTGTAGCTTCCAATATGGTAGAAGCAAGTATATT
GAATGCCACCAACACCAGCCTCATTCTCAAGTTACCTCCAGTCAAGACAAACCTCACGTGGCAT
GGAATTACCACTCCCACGTCAACATACCTGGTTTACTATATGGAGGCTAATAGGGCAAACAGCT
CTGACAGGAAACACAACATGTTGGAATCACAGGAGAATGTAGCCCGGATTGAAGGTCTGCAGCC
ATTTTCAACATACGTGATTCAGATAGCTGTGAAGAACTATTATTCTGATCCTTTAGAACATCTC
TCTCTGGGAAAAGAGATTCAAGGAAAAACTAAAAGTGGAGTGCCCGGGGCAGTTTGTCATATCA
ATGCAACTGTGCTGTCGGACACCAGTCTTCTTGTATTCTGGACAGAATCGCATAAACCAAACGG
ACCCAAAGAGTTAGTCCGCTATCAGTTGGTTATGTCATACCTGGCTCCGATTCCTGAGACTCCT
CTAAGACAGGACGAATTTCCAAGCGCCAGGCTTTCTCTACTTGTCACTAAACTCTCTGGTGGAC
AACAATATGTGCTGAAGATCCTTGCCTGCCACTCAGAGGAAATGTGGTGTACTGAGAGTCATCC
TGTCAGTGTCAACATGTTTGACACACCGGAGAAACCTTCTGCCTTGGTTCCAGAGAACACTAGT
CTGCTGTTGGATTGGAAGGCTCCGTCTAACGCTAACCTCACCAGATTTTGGTTTGAACTCCAGA
AGTGGAAGTATAGTGAGTTTTACCATGTCAAGGCTTCATGCAGCCAAGGTCCAGTTTATGTCTG
TAACATCGCAAATCTGCAGCCTTACACTCCTTATAACATCCGAGTGGTGGTGGTCTATACGACA
GGAGAAAATAGCTCCTCGATTCCCGAGAGCTTCAAGACAAAAGCTGGAGTCCCAAGCAAACCAG
GGATTCCTAAGTTACTAGAAGGGAGTAAAAATTCAATCCAGTGGGAAAAAGCCGAAGATAACGG
GAACAGATTGATGTACTACACCCTGGAGGTCAGAAAAAGCATTTCAAATGACTCACGGGACCAG
AGTTTAAGGTGGACGGCGGTGTTTAATGGGTCCTGCAGTAGCATTTGCACATGGAGGTCAAAAA
ACCTAAAAGGAACTTTCCAGTTCAGAGCAGTAGCGTCAAATGCTATTGGATTTGGAGAATACAG
TGAAATCAGTGAAGATATTACATTAGTGGAAGATGGTTTTTGGATAACAGAAACAAGTTTTATA
CTTACTATCATAGTTGGGATATTTCTGGTTGCCACAGTCCCACTGACCTTTGTCTGGCATAGAA
GCTTGAAAAACCACAAAGCTACCAAGGAAGGCCTCTCAGTTCTCAACGACAATGACCAAGAGTT
GGCTGAGCTTCGAGGACTGGCGGCTGGAGTGGGCCTGGCCAATGCCTGCTATGCAGTACATACT
CTTCCAACCCAAGAGGAGATTGAAAGTCTTCCCGCCTTCCCTCGGGAGAAGCTGAGCCTGCGCC
TTCTGTTGGGAAGTGGAGCTTTTGGAGAAGTGTACGAGGGCACAGCTGTAGACATCCTAGGACG
GGGAAGTGGAGAAATCAAGGTGGCCGTGAAGACCCTGAAGAAAGGTTCGACAGACCAGGAGAAG
ATCGAGTTCCTGAAGGAGGCACACCTGATGAGCAAGTTTAATCACCCCAACATTCTGAAGCAGC
TGGGAGTCTGTCTGCTGAGTGAACCCCAGTACATTATCCTGGAACTGATGGAAGGGGGAGACCT
TCTAAGCTATCTGCGCAAAGCCCGAGGGACAACGTTGTCTGGCCCTTTACTCACATTGGCTGAC
CTGGTAGAGCTGTGTGTAGATATTTCAAAAGGCTGCGTCTACTTGGAGCAGATGCACTTCATTC
ACAGGGATCTGGCAGCTCGGAATTGCCTTGTGTCTGTGAAAGACTATACCAGTCCTCGGGTAGT
CAAGATCGGTGACTTTGGTTTGGCAAGGGAAATCTATAAGCATGATTATTATAGAAAGAGAGGG
GAAGGCCTGCTTCCTGTCCGGTGGATGGCTCCTGAAAACTTGATGGATGGAATCTTCACTTCCC
AGTCTGATGTATGGTCTTTTGGAATTTTGGTTTGGGAGATTTTAACTCTTGGTCATCAACCTTA
TCCAGCGCATTCCAACCTTGATGTTTTAAACTATGTGCAAGCAGGAGGGAGACTGGAGCCACCG
AGAAACTGTCCTGATGATCTGTGGAATTTAATGTTCCGATGTTGGGCCCAAGAACCTGACCAAA
GACCCACTTTCTATAACATTCAAGACCAGCTTCAGTTATTCAGAAATGTTTCCTTAAACAATGT
TTCTCACTGTGGACAAGCAGCTCCTGCTGGTGGAGTCATCAACAAAGGCTTTGAAGGTGAAGAC
AATGAAATGGCCACTTTGAATTCAGATGACACGATGCCAGTTGCCTTGATGGAAACCAGGAACC
AAGAAGGATTAAATTATATGGTACTTGCCACAAAGTGTAGCCAAAGTGAGGATCGTTATGAGGG
TCCTCTAGGCTCTAAGGAATCTGGGTTGCATGATCTGAAGAAAGACGAGAGGCAACCAGCAGAC
AAAGATTTCTGCCAGCAACCACAGGTGGCTTATGGCTCTCCTGGCCACTCTGAAGGCCTGAACT
ATGCCTGTCTTGCTCACAGTGGACATGGAGATGTGTCTGAATAATAGTATCTCATAGGAAACAT
AGCACTGAGATGAACACTGTATTAAGTTAAAAAGAAGAAAGGTGGGGTGGCAGTCTAGACTCTG
AACTGACACAGCCAAGTTCCAAAGTTCTGATCTTGGTTCCAAGAGCCATTATGTTTCATTCAGC
ATTCTCTTTACCAGTGACGTAACCTTCAGTGGATTATCAGAGGAACCTGTGTGTGTGCGGAAAT
CCCAGGACAAATCCTAAGTCTGGGAAGAAAACATCACTGTCTCTCTCCTCTGAAGCCCTTTACT
TCAGAGCATTGCCTGCCCTGGCAATCTTACTAGGTTCATGCAAGGATGTGAGTGGGGGAGGGGC
CGGAGTCTGCTGAGGACCACCTGAACTACAGATTACCTTAAGAGGATGCAGGAAACAATTACTC
ACACAGGAGGAAGCAGCCTGTGGACCATGAGGAATCATCTGGCACGCTATTATTCCAATAAAAT
ATTCCCTTTAATCATCA

hide sequence

RefSeq Acc Id:

XM_039098445 ⟹ XP_038954373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,975,328 - 32,126,671 (-)	NCBI
mRatBN7.2	20	31,432,636 - 31,583,996 (-)	NCBI

RefSeq Acc Id:

XM_039098447 ⟹ XP_038954375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,975,328 - 32,126,672 (-)	NCBI
mRatBN7.2	20	31,433,121 - 31,583,997 (-)	NCBI

RefSeq Acc Id:

XM_063278974 ⟹ XP_063135044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,991,774 - 32,126,675 (-)	NCBI

RefSeq Acc Id:

XM_063278975 ⟹ XP_063135045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,975,328 - 32,085,682 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_037006	(Get FASTA)	NCBI Sequence Viewer
	XP_008771084	(Get FASTA)	NCBI Sequence Viewer
	XP_038954373	(Get FASTA)	NCBI Sequence Viewer
	XP_038954375	(Get FASTA)	NCBI Sequence Viewer
	XP_063135044	(Get FASTA)	NCBI Sequence Viewer
	XP_063135045	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40966	(Get FASTA)	NCBI Sequence Viewer
	AAA40967	(Get FASTA)	NCBI Sequence Viewer
	AAA40968	(Get FASTA)	NCBI Sequence Viewer
	EDL92942	(Get FASTA)	NCBI Sequence Viewer
	EDL92943	(Get FASTA)	NCBI Sequence Viewer
	EDL92944	(Get FASTA)	NCBI Sequence Viewer
	EDL92945	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000459
	ENSRNOP00000068996
GenBank Protein	Q63132	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_037006 ⟸ NM_012874
- Peptide Label:	precursor
- UniProtKB:	Q63130 (UniProtKB/Swiss-Prot), Q63131 (UniProtKB/Swiss-Prot), Q63132 (UniProtKB/Swiss-Prot), A6K478 (UniProtKB/TrEMBL), A0A8L2UH45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRIRWLTPKPATFVVLGCVWISVAQGTILSSCLTSCVTNLGRQLDSGTRYNLSEACIQGCQFW NSIDQEKCALKCNDTYVTICERESCEVGCSNAEGSYEEEVLDNTELPTAPFASSIGSNGVTLRW NPANISGVKYIIQWKYAQLPGSWAYTETVSKLSYMVEPLHPFTEYIFRVVWIFTAQLHLYSPPS PSYRTHPYGVPETAPFITNIESSSPDTVEVSWAPPYFPGGPILGYNLRLISKTQKLDSGTQRTS FQFYSTLPNTTYRFSIAAVNEVGEGPEAESMITTPSPAVQEEEQWLFLSRKTSLRKRSLKYLVD EAHCLWSDAIRHNITGISVNTQQEVVYFSEGTIIWMKGAANMSDVSDLRIFYRGSALVSSISVD WLYQRMYFIMDNRVHVCDLKHCSNLEEITPFSIVAPQKVVVDSYNGYVFYLLRDGIYRVHLPLP SVRDTKAVRIVESGTLKDFAVKPQSKRIIYFNGTMQVFMSTFLDGSAFHRVLPWVPLADVKSFA CENNDFLITDGKAIFQQDSLSFNEFIVGCDLSHIEEFGFGNLVIFGSSVQSYPLPGHPQEVSVL FGSREALIQWKPPILAIGASPSAWQNWTYEVKVSSQDILETTQVFLNISRTVLNVPKLQSSTKY MVSVRASSPKGPGPWSEPSVGTTLVPATEPPFIMAVKEDGLWSKPLSSFGPGEFLSSDVGNVSD MDWYNNSLYYSDTKGNVYVRPLNGMDISENYHISSIAGACALAFEWLGHFLYWAGKTYVIQRQS VLTGHTDIVTHVKLLVNDMAVDPVGGYLYWTTLYSVESTRLNGESSLVLQAQPWLSGKKVIALT LDLSDGLLYWLVQDNQCIHLYTAVLRGWSGADATITEFAAWSTSEISQNALMYYSGRLFWINGF RIITAQEIGQRTSVSVSEPGKFNQFTIIQTSLKPLPGNFSSTPTVIPDSVQESSFRIEGHTSSF RILWNEPPAVDWGIVFYSVEFSAHSKFLAIEQQSLPVFTVEGLEPYALFNLSVTPYTYWGKGQK TSLSFRAPESVPSAPENPRIFILSLGRYTRKNEVVVEFRWNKPKHENGVLTKSEIFYHISKQSG TNKSTEDWVSVSVTPPVMSFQLEAMSPGYIVSFQVRVFTSKGPGPFSDIVMSKTSEIKPCPYLI SLLGNKIEFLDMDQNQVVWTFSLEGAVSTVGYTADDEMGYFAQGDALFLLNLHNHSSSKLFQDV LASDIAVIAVDWIARHLYFALKASQDGTQIFDVDLEHKVKSPREVKICKSHTAIISFSMYPLLS RLYWTEVSDLGYQMFYCNISSHTLHHVLQPKASNQHGRRQCSCNVTESELSGAMTVDTSDPDRP WIYFTKQQEIWAMDLEGCQCWKVIMVPATPGKRIISLTVDGEFIYWITTMKDDTEIYQAKKGSG AILSQVKAPRSKHILAYSSALQPFPDKAYLSVASNMVEASILNATNTSLILKLPPVKTNLTWHG ITTPTSTYLVYYMEANRANSSDRKHNMLESQENVARIEGLQPFSTYVIQIAVKNYYSDPLEHLS LGKEIQGKTKSGVPGAVCHINATVLSDTSLLVFWTESHKPNGPKELVRYQLVMSYLAPIPETPL RQDEFPSARLSLLVTKLSGGQQYVLKILACHSEEMWCTESHPVSVNMFDTPEKPSALVPENTSL LLDWKAPSNANLTRFWFELQKWKYSEFYHVKASCSQGPVYVCNIANLQPYTPYNIRVVVVYTTG ENSSSIPESFKTKAGVPSKPGIPKLLEGSKNSIQWEKAEDNGNRLMYYTLEVRKSISNDSRDQS LRWTAVFNGSCSSICTWRSKNLKGTFQFRAVASNAIGFGEYSEISEDITLVEDGFWITETSFIL TIIVGIFLVATVPLTFVWHRSLKNHKATKEGLSVLNDNDQELAELRGLAAGVGLANACYAVHTL PTQEEIESLPAFPREKLSLRLLLGSGAFGEVYEGTAVDILGRGSGEIKVAVKTLKKGSTDQEKI EFLKEAHLMSKFNHPNILKQLGVCLLSEPQYIILELMEGGDLLSYLRKARGTTLSGPLLTLADL VELCVDISKGCVYLEQMHFIHRDLAARNCLVSVKDYTSPRVVKIGDFGLAREIYKHDYYRKRGE GLLPVRWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPR NCPDDLWNLMFRCWAQEPDQRPTFYNIQDQLQLFRNVSLNNVSHCGQAAPAGGVINKGFEGEDN EMATLNSDDTMPVALMETRNQEGLNYMVLATKCSQSEDRYEGPLGSKESGLHDLKKDERQPADK DFCQQPQVAYGSPGHSEGLNYACLAHSGHGDVSE hide sequence

RefSeq Acc Id:	XP_008771084 ⟸ XM_008772862
- Peptide Label:	isoform X3
- UniProtKB:	A6K476 (UniProtKB/TrEMBL), A0A8L2UH45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRIRWLTPKPATFVVLGCVWISVAQGTILSSCLTSCVTNLGRQLDSGTRYNLSEACIQGCQFW NSIDQEKCALKCNDTYVTICERESCEVGCSNAEGSYEEEVLDNTELPTAPFASSIGSNGVTLRW NPANISGVKYIIQWKYAQLPGSWAYTETVSKLSYMVEPLHPFTEYIFRVVWIFTAQLHLYSPPS PSYRTHPYGVPETAPFITNIESSSPDTVEVSWAPPYFPGGPILGYNLRLISKTQKLDSGTQRTS FQFYSTLPNTTYRFSIAAVNEVGEGPEAESMITTPSPAVQEEEQWLFLSRKTSLRKRSLKYLVD EAHCLWSDAIRHNITGISVNTQQEVVYFSEGTIIWMKGAANMSDVSDLRIFYRGSALVSSISVD WLYQRMYFIMDNRVHVCDLKHCSNLEEITPFSIVAPQKVVVDSYNGDTKAVRIVESGTLKDFAV KPQSKRIIYFNGTMQVFMSTFLDGSAFHRVLPWVPLADVKSFACENNDFLITDGKAIFQQDSLS FNEFIVGCDLSHIEEFGFGNLVIFGSSVQSYPLPGHPQEVSVLFGSREALIQWKPPILAIGASP SAWQNWTYEVKVSSQDILETTQVFLNISRTVLNVPKLQSSTKYMVSVRASSPKGPGPWSEPSVG TTLVPATEPPFIMAVKEDGLWSKPLSSFGPGEFLSSDVGNVSDMDWYNNSLYYSDTKGNVYVRP LNGMDISENYHISSIAGACALAFEWLGHFLYWAGKTYVIQRQSVLTGHTDIVTHVKLLVNDMAV DPVGGYLYWTTLYSVESTRLNGESSLVLQAQPWLSGKKVIALTLDLSDGLLYWLVQDNQCIHLY TAVLRGWSGADATITEFAAWSTSEISQNALMYYSGRLFWINGFRIITAQEIGQRTSVSVSEPGK FNQFTIIQTSLKPLPGNFSSTPTVIPDSVQESSFRIEGHTSSFRILWNEPPAVDWGIVFYSVEF SAHSKFLAIEQQSLPVFTVEGLEPYALFNLSVTPYTYWGKGQKTSLSFRAPESVPSAPENPRIF ILSLGRYTRKNEVVVEFRWNKPKHENGVLTKSEIFYHISKQSGTNKSTEDWVSVSVTPPVMSFQ LEAMSPGYIVSFQVRVFTSKGPGPFSDIVMSKTSEIKPCPYLISLLGNKIEFLDMDQNQVVWTF SLEGAVSTVGYTADDEMGYFAQGDALFLLNLHNHSSSKLFQDVLASDIAVIAVDWIARHLYFAL KASQDGTQIFDVDLEHKVKSPREVKICKSHTAIISFSMYPLLSRLYWTEVSDLGYQMFYCNISS HTLHHVLQPKASNQHGRRQCSCNVTESELSGAMTVDTSDPDRPWIYFTKQQEIWAMDLEGCQCW KVIMVPATPGKRIISLTVDGEFIYWITTMKDDTEIYQAKKGSGAILSQVKAPRSKHILAYSSAL QPFPDKAYLSVASNMVEASILNATNTSLILKLPPVKTNLTWHGITTPTSTYLVYYMEANRANSS DRKHNMLESQENVARIEGLQPFSTYVIQIAVKNYYSDPLEHLSLGKEIQGKTKSGVPGAVCHIN ATVLSDTSLLVFWTESHKPNGPKELVRYQLVMSYLAPIPETPLRQDEFPSARLSLLVTKLSGGQ QYVLKILACHSEEMWCTESHPVSVNMFDTPEKPSALVPENTSLLLDWKAPSNANLTRFWFELQK WKYSEFYHVKASCSQGPVYVCNIANLQPYTPYNIRVVVVYTTGENSSSIPESFKTKAGVPSKPG IPKLLEGSKNSIQWEKAEDNGNRLMYYTLEVRKSISNDSRDQSLRWTAVFNGSCSSICTWRSKN LKGTFQFRAVASNAIGFGEYSEISEDITLVEDGFWITETSFILTIIVGIFLVATVPLTFVWHRS LKNHKATKEGLSVLNDNDQELAELRGLAAGVGLANACYAVHTLPTQEEIESLPAFPREKLSLRL LLGSGAFGEVYEGTAVDILGRGSGEIKVAVKTLKKGSTDQEKIEFLKEAHLMSKFNHPNILKQL GVCLLSEPQYIILELMEGGDLLSYLRKARGTTLSGPLLTLADLVELCVDISKGCVYLEQMHFIH RDLAARNCLVSVKDYTSPRVVKIGDFGLAREIYKHDYYRKRGEGLLPVRWMAPENLMDGIFTSQ SDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPRNCPDDLWNLMFRCWAQEPDQR PTFYNIQDQLQLFRNVSLNNVSHCGQAAPAGGVINKGFEGEDNEMATLNSDDTMPVALMETRNQ EGLNYMVLATKCSQSEDRYEGPLGSKESGLHDLKKDERQPADKDFCQQPQVAYGSPGHSEGLNY ACLAHSGHGDVSE hide sequence

Ensembl Acc Id:

ENSRNOP00000068996 ⟸ ENSRNOT00000080444

Ensembl Acc Id:

ENSRNOP00000000459 ⟸ ENSRNOT00000000459

RefSeq Acc Id:	XP_038954373 ⟸ XM_039098445
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UPK7 (UniProtKB/TrEMBL), A0A8L2UH45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954375 ⟸ XM_039098447
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2UH45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135045 ⟸ XM_063278975
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063135044 ⟸ XM_063278974
- Peptide Label:	isoform X4
- UniProtKB:	A0A8L2UH45 (UniProtKB/TrEMBL)

Protein Domains

Fibronectin type-III Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63132-F1-model_v2	AlphaFold	Q63132	1-2338	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701627

Promoter ID:

EPDNEW_R12146

Type:

single initiation site

Name:

Ros1_1

Description:

ROS proto-oncogene 1 , receptor tyrosine kinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	33,322,965 - 33,323,025	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3591	AgrOrtholog
BioCyc Gene	G2FUF-3649	BioCyc
Ensembl Genes	ENSRNOG00000000406	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000000459	ENTREZGENE
	ENSRNOT00000080444	ENTREZGENE
Gene3D-CATH	2.120.10.30	UniProtKB/Swiss-Prot
	2.60.40.10	UniProtKB/Swiss-Prot
	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
InterPro	6-blade_b-propeller_TolB-like	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	LDLR_classB_rpt	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot
	RTK	UniProtKB/Swiss-Prot
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
	Tyr_kinase_AS	UniProtKB/Swiss-Prot
	Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:25346	UniProtKB/Swiss-Prot
NCBI Gene	25346	ENTREZGENE
PANTHER	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ROS	UniProtKB/Swiss-Prot
	TYROSINE-PROTEIN KINASE RECEPTOR	UniProtKB/Swiss-Prot
Pfam	fn3	UniProtKB/Swiss-Prot
	Pkinase_Tyr	UniProtKB/Swiss-Prot
PhenoGen	Ros1	PhenoGen
PRINTS	TYRKINASE	UniProtKB/Swiss-Prot
PROSITE	FN3	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_TYR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000406	RatGTEx
SMART	FN3	UniProtKB/Swiss-Prot
	SM00135	UniProtKB/Swiss-Prot
	TyrKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49265	UniProtKB/Swiss-Prot
	SSF56112	UniProtKB/Swiss-Prot
	YWTD domain	UniProtKB/Swiss-Prot
UniProt	A0A8L2UH45	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UPK7	ENTREZGENE, UniProtKB/TrEMBL
	A6K476	ENTREZGENE, UniProtKB/TrEMBL
	A6K477_RAT	UniProtKB/TrEMBL
	A6K478	ENTREZGENE, UniProtKB/TrEMBL
	A6K479_RAT	UniProtKB/TrEMBL
	Q63130	ENTREZGENE
	Q63131	ENTREZGENE
	Q63132	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q63130	UniProtKB/Swiss-Prot
	Q63131	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ros1	ROS proto-oncogene 1 , receptor tyrosine kinase	LOC103694423	proto-oncogene tyrosine-protein kinase ROS-like	Data merged from RGD:9455353	737654	PROVISIONAL
2014-08-25	LOC103694423	proto-oncogene tyrosine-protein kinase ROS-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2014-07-10	Ros1	ROS proto-oncogene 1 , receptor tyrosine kinase	Ros1	c-ros oncogene 1 , receptor tyrosine kinase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-20	Ros1	c-ros oncogene 1 , receptor tyrosine kinase	Ros1	Ros1 proto-oncogene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-13	Ros1	Ros1 proto-oncogene	Ros1	v-ros UR2 sarcoma virus oncogene homolog 1 (avian)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2003-04-09	Ros1	v-ros UR2 sarcoma virus oncogene homolog 1 (avian)		Rat heart - derived c - ros - 1 proto - oncogene	Name updated	629478	APPROVED
2002-06-10	Ros1	Rat heart - derived c - ros - 1 proto - oncogene			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	2,317 amino acids	633804
gene_transcript	consists of different size transcripts in lung, kidney and heart which may arise from alternative splicing	633804

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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