Cntn3 (contactin 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cntn3 (contactin 3) Rattus norvegicus
Analyze
Symbol: Cntn3
Name: contactin 3
RGD ID: 3253
Description: Involved in neuron projection development. Predicted to be located in plasma membrane and side of membrane. Predicted to be active in neuron projection. Orthologous to human CNTN3 (contactin 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BIG-1; brain-derived immunoglobulin superfamily protein 1; contactin 3 (plasmacytoma associated); contactin-3; Pang; plasmacytoma-associated neuronal glycoprotein; Plasmacytoma-associated neuronal glycoprotein (neural cell adhesion molecule BIG-1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84136,397,575 - 136,770,765 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4136,398,572 - 136,770,717 (-)EnsemblGRCr8
mRatBN7.24134,841,268 - 135,214,460 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4134,842,266 - 135,125,613 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4140,274,841 - 140,561,673 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04136,055,613 - 136,342,411 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04134,679,394 - 134,966,120 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04134,783,671 - 135,159,309 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4134,784,668 - 135,069,970 (-)Ensemblrn6Rnor6.0
Rnor_5.04199,261,485 - 199,636,093 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44137,121,006 - 137,421,081 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4123,663,257 - 123,945,703 (-)NCBICelera
RGSC_v3.14137,365,846 - 137,665,922 (-)NCBI
Cytogenetic Map4q34-q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. BIG-1: a new TAG-1/F3-related member of the immunoglobulin superfamily with neurite outgrowth-promoting activity. Yoshihara Y, etal., Neuron 1994 Aug;13(2):415-26.

Genomics

Comparative Map Data
Cntn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84136,397,575 - 136,770,765 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4136,398,572 - 136,770,717 (-)EnsemblGRCr8
mRatBN7.24134,841,268 - 135,214,460 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4134,842,266 - 135,125,613 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4140,274,841 - 140,561,673 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04136,055,613 - 136,342,411 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04134,679,394 - 134,966,120 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04134,783,671 - 135,159,309 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4134,784,668 - 135,069,970 (-)Ensemblrn6Rnor6.0
Rnor_5.04199,261,485 - 199,636,093 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44137,121,006 - 137,421,081 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4123,663,257 - 123,945,703 (-)NCBICelera
RGSC_v3.14137,365,846 - 137,665,922 (-)NCBI
Cytogenetic Map4q34-q41NCBI
CNTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38374,262,568 - 74,614,659 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl374,262,568 - 74,614,698 (-)Ensemblhg38GRCh38
GRCh37374,311,719 - 74,663,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36374,394,412 - 74,653,033 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34374,394,411 - 74,618,331NCBI
Celera374,247,090 - 74,505,253 (-)NCBICelera
Cytogenetic Map3p12.3NCBI
HuRef374,315,581 - 74,574,586 (-)NCBIHuRef
CHM1_1374,265,523 - 74,524,151 (-)NCBICHM1_1
T2T-CHM13v2.0374,304,615 - 74,656,673 (-)NCBIT2T-CHM13v2.0
Cntn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396102,140,265 - 102,541,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6102,139,616 - 102,550,062 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386102,163,304 - 102,564,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6102,162,655 - 102,573,101 (-)Ensemblmm10GRCm38
MGSCv376102,113,300 - 102,414,661 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366102,131,248 - 102,430,765 (-)NCBIMGSCv36mm8
Celera6104,040,270 - 104,340,757 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map647.52NCBI
Cntn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542113,764,522 - 14,008,996 (+)Ensembl
ChiLan1.0NW_00495542113,688,779 - 14,008,546 (+)NCBIChiLan1.0ChiLan1.0
CNTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2274,218,091 - 74,576,802 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1374,222,880 - 74,581,654 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0374,203,074 - 74,555,980 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1376,125,024 - 76,384,508 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl376,126,857 - 76,384,431 (-)EnsemblpanPan2panpan1.1
CNTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12017,703,159 - 18,032,041 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2017,702,492 - 18,030,345 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2017,662,587 - 17,991,269 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02017,728,935 - 18,058,376 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2017,812,282 - 18,058,380 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12017,420,511 - 17,748,589 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02017,766,588 - 18,093,543 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02017,825,134 - 18,154,638 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cntn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049424,988,762 - 5,314,224 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366034,988,763 - 5,232,291 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366034,990,528 - 5,314,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1355,648,528 - 56,017,767 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11355,648,491 - 56,018,887 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21361,559,427 - 61,705,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12235,208,217 - 35,458,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2235,210,102 - 35,313,065 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041131,215,619 - 131,553,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247738,885,220 - 9,161,873 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247738,885,273 - 9,259,569 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cntn3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1644,754,825 - 45,111,589 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cntn3
2932 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:89
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000008221
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 7 51 149 71 67 39 27 39 6 233 103 8 127 71 88 28 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000008221   ⟹   ENSRNOP00000008221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4136,398,572 - 136,681,911 (-)Ensembl
mRatBN7.2 Ensembl4134,842,266 - 135,125,613 (-)Ensembl
Rnor_6.0 Ensembl4134,784,668 - 135,069,970 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105177   ⟹   ENSRNOP00000087903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4134,846,893 - 135,104,215 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123239   ⟹   ENSRNOP00000099826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4136,400,919 - 136,681,911 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134743   ⟹   ENSRNOP00000111925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4136,398,572 - 136,681,911 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155072   ⟹   ENSRNOP00000110911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4136,403,199 - 136,660,512 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171913   ⟹   ENSRNOP00000110075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4136,398,572 - 136,770,717 (-)Ensembl
RefSeq Acc Id: NM_019329   ⟹   NP_062202
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,398,572 - 136,681,911 (-)NCBI
mRatBN7.24134,842,266 - 135,125,613 (-)NCBI
Rnor_6.04134,784,668 - 135,069,970 (-)NCBI
Rnor_5.04199,261,485 - 199,636,093 (-)NCBI
RGSC_v3.44137,121,006 - 137,421,081 (-)RGD
Celera4123,663,257 - 123,945,703 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236968   ⟹   XP_006237030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,397,575 - 136,770,765 (-)NCBI
mRatBN7.24134,841,268 - 135,214,460 (-)NCBI
Rnor_6.04134,783,671 - 135,159,309 (-)NCBI
Rnor_5.04199,261,485 - 199,636,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108281   ⟹   XP_038964209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,397,575 - 136,770,765 (-)NCBI
mRatBN7.24134,841,268 - 135,214,460 (-)NCBI
RefSeq Acc Id: XM_039108282   ⟹   XP_038964210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,431,317 - 136,770,765 (-)NCBI
mRatBN7.24134,875,009 - 135,214,460 (-)NCBI
RefSeq Acc Id: XM_039108283   ⟹   XP_038964211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,397,575 - 136,492,420 (-)NCBI
mRatBN7.24134,841,268 - 134,936,128 (-)NCBI
RefSeq Acc Id: XM_039108284   ⟹   XP_038964212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,397,575 - 136,492,420 (-)NCBI
mRatBN7.24134,841,268 - 134,936,128 (-)NCBI
RefSeq Acc Id: XM_039108285   ⟹   XP_038964213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,449,826 - 136,770,765 (-)NCBI
mRatBN7.24134,907,112 - 135,214,460 (-)NCBI
RefSeq Acc Id: XM_063286624   ⟹   XP_063142694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84136,397,575 - 136,492,421 (-)NCBI
RefSeq Acc Id: NP_062202   ⟸   NM_019329
- Peptide Label: precursor
- UniProtKB: Q62682 (UniProtKB/Swiss-Prot),   A0A8I6A9N6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237030   ⟸   XM_006236968
- Peptide Label: isoform X1
- UniProtKB: Q62682 (UniProtKB/Swiss-Prot),   A0A8I6A9N6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008221   ⟸   ENSRNOT00000008221
RefSeq Acc Id: XP_038964209   ⟸   XM_039108281
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A9N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964212   ⟸   XM_039108284
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038964211   ⟸   XM_039108283
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038964210   ⟸   XM_039108282
- Peptide Label: isoform X3
- UniProtKB: A6IBJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964213   ⟸   XM_039108285
- Peptide Label: isoform X5
- UniProtKB: A6IBJ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087903   ⟸   ENSRNOT00000105177
RefSeq Acc Id: XP_063142694   ⟸   XM_063286624
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000110075   ⟸   ENSRNOT00000171913
Ensembl Acc Id: ENSRNOP00000111925   ⟸   ENSRNOT00000134743
Ensembl Acc Id: ENSRNOP00000110911   ⟸   ENSRNOT00000155072
Ensembl Acc Id: ENSRNOP00000099826   ⟸   ENSRNOT00000123239
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62682-F1-model_v2 AlphaFold Q62682 1-1028 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3253 AgrOrtholog
BioCyc Gene G2FUF-43509 BioCyc
Ensembl Genes ENSRNOG00000006144 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008221 ENTREZGENE
  ENSRNOT00000008221.7 UniProtKB/Swiss-Prot
  ENSRNOT00000123239 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
KEGG Report rno:54279 UniProtKB/Swiss-Prot
NCBI Gene 54279 ENTREZGENE
PANTHER CONTACTIN 3B-RELATED UniProtKB/Swiss-Prot
  PROTEIN SIDEKICK UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
PhenoGen Cntn3 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006144 RatGTEx
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A0A8I6A9N6 ENTREZGENE
  A0ABK0LG17_RAT UniProtKB/TrEMBL
  A0ABK0LX23_RAT UniProtKB/TrEMBL
  A0ABK0M250_RAT UniProtKB/TrEMBL
  A0ABK0M6Y6_RAT UniProtKB/TrEMBL
  A6IBJ1 ENTREZGENE, UniProtKB/TrEMBL
  CNTN3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Cntn3  contactin 3  Cntn3  contactin 3 (plasmacytoma associated)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Cntn3  contactin 3 (plasmacytoma associated)  Cntn3  contactin 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 Cntn3  contactin 3  LOC497790  hypothetical gene supported by NM_019329  Data merged from RGD:1584887 1643240 APPROVED
2006-11-19 LOC497790  hypothetical gene supported by NM_019329      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Cntn3  contactin 3      Symbol and Name status set to approved 70586 APPROVED
2001-04-06 Cntn3  Contactin 3      Symbol and name changed to reflect Human and Mouse nomenclature 61478 WITHDRAWN
2001-04-06 Pang  Plasmacytoma-associated neuronal glycoprotein      Symbol inconsistent with Human and Mouse 61478 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_domains contains six Ig-like domains and four fibronectin type III repeats 632352
gene_expression expression is developmentally regulated with the highest level in the adult brain 632352
gene_expression expression restricted to Purkinje cells of the cerebellum, granule cells of the dentate gyrus, and neurons in the superficial layers of the cerebral cortex 632352
gene_function may be involved in the formation and maintenance of neuron type-specific networks 632352
gene_product member of the immunoglobulin (Ig) superfamily 632352