Advanced Search (OLGA)

Gene: Odf2 (outer dense fiber of sperm tails 2) Rattus norvegicus

Analyze

Symbol:

Odf2

Name:

outer dense fiber of sperm tails 2

RGD ID:

3229

Description:

Predicted to enable small GTPase binding activity. Involved in spermatid development. Located in outer dense fiber. Orthologous to human ODF2 (outer dense fiber of sperm tails 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

84 kDa outer dense fiber protein; cenexin; outer dense fiber of sperm tail 2; outer dense fiber of sperm tails protein 2; outer dense fiber protein 2; sperm outer dense fiber major protein 2; testis-specific autoantigen

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ODF2 (outer dense fiber of sperm tails 2)	HGNC	Ensembl, Inparanoid, NCBI, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Odf2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Odf2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ODF2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ODF2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Odf2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ODF2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ODF2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Odf2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Odf2 (outer dense fiber of sperm tails 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MLLT10 (MLLT10 histone lysine methyltransferase DOT1L cofactor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ODF2 (outer dense fiber of sperm tails 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ODF2 (outer dense fiber of sperm tails 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Odf2 (outer dense fiber of sperm tails 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Odf2 (outer dense fiber of sperm tails 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	odf2a (outer dense fiber of sperm tails 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	odf2a (outer dense fiber of sperm tails 2a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	odf2b (outer dense fiber of sperm tails 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8851	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	odf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	odf2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	33,557,738 - 33,605,076 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	33,558,832 - 33,605,076 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,160,981 - 13,207,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,161,494 - 13,206,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,236,158 - 16,281,960 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	24,821,123 - 24,866,923 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,072,277 - 23,117,752 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,449,733 - 8,495,764 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,450,275 - 8,496,008 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	13,793,222 - 13,839,956 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	8,876,934 - 8,910,367 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,938,913 - 7,972,298 (+)	NCBI		Celera
RGSC_v3.1	3	8,878,024 - 8,910,664 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-nitrophenol (ISO)

acetohydrazide (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (EXP)

arsenic atom (EXP)

arsenite(3-) (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butanal (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diethylstilbestrol (EXP)

doxorubicin (EXP,ISO)

Enterolactone (ISO)

fenvalerate (EXP)

flavonoids (EXP)

folic acid (ISO)

gentamycin (EXP)

herbicide (ISO)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

lead(0) (ISO)

mercury dichloride (EXP)

metolachlor (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP,ISO)

potassium dichromate (EXP,ISO)

pyrethrins (EXP)

resveratrol (ISO)

rotenone (EXP)

sodium arsenite (EXP,ISO)

sodium fluoride (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

centriole-centriole cohesion (ISO)

cilium organization (ISO)

intracellular protein localization (ISO)

regulation of cilium assembly (IBA,ISO)

spermatid development (IEP)

spermatogenesis (IEA)

Cellular Component

centriolar subdistal appendage (ISO)

centriole (IEA,ISO)

centrosome (IBA,IEA,ISO,ISS)

ciliary basal body (ISO)

ciliary transition fiber (IEA,ISO)

cilium (IEA,ISO)

microtubule (IEA)

motile cilium (IEA)

outer dense fiber (IDA)

sperm flagellum (IEA,ISO)

sperm midpiece (IEA,ISO,ISS)

sperm principal piece (IEA,ISO,ISS)

spindle pole (IEA)

Molecular Function

protein binding (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification and characterization of new cDNAs encoding outer dense fiber proteins of rat sperm.	Brohmann H, etal., J Biol Chem 1997 Apr 11;272(15):10327-32.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Developmental expression of the 84-kDa ODF sperm protein: localization to both the cortex and medulla of outer dense fibers and to the connecting piece.	Schalles U, etal., Dev Biol 1998 Jul 15;199(2):250-60.
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	Expression cloning of a rat testicular transcript abundant in germ cells, which contains two leucine zipper motifs.	Turner KJ, etal., Biol Reprod 1997 Nov;57(5):1223-32.

Additional References at PubMed

PMID:15340007	PMID:15344312	PMID:16297385	PMID:16687649	PMID:16920728	PMID:17240355	PMID:17646400	PMID:18398819	PMID:19625297	PMID:21399614	PMID:21630459	PMID:23213374
PMID:23386061	PMID:23400999	PMID:24157919	PMID:24421332	PMID:24947469	PMID:25361759	PMID:27682589	PMID:28422092	PMID:29487109	PMID:31904090

Genomics

Comparative Map Data

Odf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	33,557,738 - 33,605,076 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	33,558,832 - 33,605,076 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,160,981 - 13,207,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,161,494 - 13,206,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,236,158 - 16,281,960 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	24,821,123 - 24,866,923 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,072,277 - 23,117,752 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,449,733 - 8,495,764 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,450,275 - 8,496,008 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	13,793,222 - 13,839,956 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	8,876,934 - 8,910,367 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,938,913 - 7,972,298 (+)	NCBI		Celera
RGSC_v3.1	3	8,878,024 - 8,910,664 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

ODF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	128,455,185 - 128,501,292 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	128,455,186 - 128,501,292 (+)	Ensembl			hg38	GRCh38
GRCh37	9	131,217,464 - 131,263,571 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	130,258,253 - 130,303,060 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	128,298,840 - 128,336,666	NCBI
Celera	9	101,869,240 - 101,914,039 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	100,830,194 - 100,876,121 (+)	NCBI		HuRef
CHM1_1	9	131,368,458 - 131,414,258 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	140,662,221 - 140,708,139 (+)	NCBI		T2T-CHM13v2.0

Odf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	29,779,026 - 29,821,758 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	29,779,233 - 29,821,758 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	29,889,014 - 29,931,746 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	29,889,221 - 29,931,746 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	29,745,240 - 29,787,266 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	29,712,109 - 29,744,548 (+)	NCBI		MGSCv36	mm8
Celera	2	29,596,701 - 29,635,684 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	20.79	NCBI

Odf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955570	932,041 - 968,012 (+)	Ensembl
ChiLan1.0	NW_004955570	932,002 - 966,602 (+)	NCBI	ChiLan1.0	ChiLan1.0

ODF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	10,850,730 - 10,896,651 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	10,853,080 - 10,899,001 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	99,577,891 - 99,623,581 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	128,245,049 - 128,291,206 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	128,245,049 - 128,291,202 (+)	Ensembl			panPan2	panpan1.1

ODF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	55,060,437 - 55,096,363 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	55,060,157 - 55,096,364 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	54,255,741 - 54,291,609 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	55,982,818 - 56,018,692 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	55,982,860 - 56,018,693 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	54,742,233 - 54,778,103 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	55,056,645 - 55,092,569 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	55,148,603 - 55,184,473 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Odf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	196,219,307 - 196,261,012 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	15,988,339 - 16,029,501 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	15,987,893 - 16,029,539 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ODF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	268,856,766 - 268,893,387 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	268,856,755 - 268,893,390 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	302,878,924 - 302,915,877 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ODF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	9,634,597 - 9,680,023 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	9,634,483 - 9,676,285 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	6,565,513 - 6,613,260 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Odf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	6,430,604 - 6,462,671 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	6,430,584 - 6,462,584 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Odf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	6,799,727 - 6,846,064 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Odf2
258 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	473
Count of miRNA genes:	242
Interacting mature miRNAs:	284
Transcripts:	ENSRNOT00000020073, ENSRNOT00000020407, ENSRNOT00000040457, ENSRNOT00000041921
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF162755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF162756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK470868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF197115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U62821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X95272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020073 ⟹ ENSRNOP00000020073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,558,832 - 33,592,777 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,161,494 - 13,194,924 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,450,275 - 8,483,703 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000020407 ⟹ ENSRNOP00000020407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,672 - 33,605,076 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,161,831 - 13,206,985 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,451,292 - 8,496,008 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000040457 ⟹ ENSRNOP00000049041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,343 - 33,592,777 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,161,494 - 13,206,985 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,450,612 - 8,483,703 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000041921 ⟹ ENSRNOP00000041336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,424 - 33,598,936 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,161,569 - 13,201,083 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,453,609 - 8,494,514 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106575 ⟹ ENSRNOP00000086048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,385 - 33,605,075 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,161,565 - 13,206,985 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163360 ⟹ ENSRNOP00000103782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,632 - 33,592,777 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168851 ⟹ ENSRNOP00000106847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,559,664 - 33,592,777 (+)	Ensembl

RefSeq Acc Id:

NM_001145005 ⟹ NP_001138477

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,267 - 33,592,780 (+)	NCBI
mRatBN7.2	3	13,161,412 - 13,194,927 (+)	NCBI
Rnor_6.0	3	8,450,275 - 8,483,706 (+)	NCBI
Rnor_5.0	3	13,793,222 - 13,839,956 (+)	NCBI
RGSC_v3.4	3	8,876,934 - 8,910,367 (+)	RGD
Celera	3	7,938,913 - 7,972,298 (+)	RGD

Sequence:

show sequence

GCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGGGGAGGAGCCGCCGCG
GGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGACTTCAACGACT
TCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTGGTTTCCATCGTGTGGGAAGAACGG
AGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTG
ACGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGA
AAACCAAGAATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGT
GATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGTTAC
GATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAGGTCAAGATGCAGA
AAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAACTGGAGGAGGTAGC
ACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAACATCGAGCGCATCAAG
GAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGAAGGAATGCCTCATGT
CCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTGCCAAACAAGTCATGGCCTTGAAGGA
TACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATCAACACCTTAACGAGG
CAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGAGATC
TGTTGAGGGAGCAGCACTGCAAAGAGCTGTGCCTGAAAGTTCCTGAATGTGCGAGGCAGCACAG
GCCTGGGAGGGAGAGGCAGGAGGATTGTCAGGATTCCGAGAGACTAATGGAGCAACAAGGTGCA
TTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCGCGCCTGCTGTTACTACTGCAAGACA
AGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAGGCTCAAGCAAAGACAGC
GTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCTTCGCTGCAAA
GAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAATTTAGAGCGCAGTGGGAACCAGCACA
AGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAGACCGAGACAA
AGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGAGGAGTATGCC
GAGCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTATCTACTCTGG
AGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGTTGGAGATCAT
TGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTGGAGGAGAAGATGCGG
GAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGTATTCTGCCTTCAAGC
TAGAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCTCAATCAGGCTCACTT
GGAGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGAGGGGATGATCGACAACTACAAGAGC
CAGGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCTGCGCAGCTAGAGCGCTGCGACAAAG
AGAACAAGATGCTTAAAGACGAGATGAACAAAGAAATCGAGGCGGCCCGTCGGCAGTTCCAGTC
ACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGAGGCCAAGCTGGCTGAG
TGTCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAGCCATCATTTCAGACC
TGCGCAGCCGGGTAAGGGACTGGCAGAAGGGATCCCACGAACTGGCCCGAGCAGGGGCCCGCTT
ACCGAGATGAGCTGCACGCCCCCCAAGGGAGGACCACTTCCTTTTTCTTGGCTGCCGATTTCTG
AAAGGAGTGAGCTATCATCAGTGCTGTGAAATAAAAGTCTGGTGTGCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399108 ⟹ NP_001386037

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,412 - 33,605,076 (+)	NCBI
mRatBN7.2	3	13,161,557 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

NM_001399109 ⟹ NP_001386038

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,412 - 33,592,780 (+)	NCBI
mRatBN7.2	3	13,161,557 - 13,194,927 (+)	NCBI

RefSeq Acc Id:

NM_001399111 ⟹ NP_001386040

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,412 - 33,592,780 (+)	NCBI
mRatBN7.2	3	13,161,557 - 13,194,927 (+)	NCBI

RefSeq Acc Id:

NM_001399112 ⟹ NP_001386041

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,412 - 33,592,780 (+)	NCBI
mRatBN7.2	3	13,161,557 - 13,194,927 (+)	NCBI

RefSeq Acc Id:

NM_017213 ⟹ NP_058909

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,674 - 33,592,780 (+)	NCBI
mRatBN7.2	3	13,161,819 - 13,194,927 (+)	NCBI
Rnor_6.0	3	8,450,612 - 8,483,706 (+)	NCBI
Rnor_5.0	3	13,793,222 - 13,839,956 (+)	NCBI
RGSC_v3.4	3	8,876,934 - 8,910,367 (+)	RGD
Celera	3	7,939,250 - 7,972,298 (+)	NCBI

Sequence:

show sequence

CGCTAACGGGCGGGCCGGCCGCCTCCGTCCTCTCCGGGCCATCGGCAGCGCTCTTTCCCTCCTC
TGCTGCCCTCGGGCAGGGCTGCGCCCTTCTATGGGCAGAACCCCGTTCCCTCTTGCCCGCTGGA
CAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCC
AAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATT
GGCAAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCAACTTTGCGGCTTT
GATGCTTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAGGTTTCCATCGTGTGGGAAGAA
CGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACT
GTGACGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGG
TGAAAACCAAGAATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTC
GGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGT
TACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAGGTCAAGATGC
AGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAACTGGAGGAGGT
AGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAACATCGAGCGCATC
AAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGAAGGAATGCCTCA
TGTCCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTGCCAAACAAGTCATGGCCTTGAA
GGATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATCAACACCTTAACG
AGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGAG
ATCTGTTGAGGGAGCAGCACTGCAAAGAGGATTCCGAGAGACTAATGGAGCAACAAGGTGCATT
ACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCGCGCCTGCTGTTACTACTGCAAGACAAG
GACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAGGCTCAAGCAAAGACAGCGT
CTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCTTCGCTGCAAAGA
GGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAATTTAGAGCGCAGTGGGAACCAGCACAAG
GCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAGACCGAGACAAAG
AGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGAGGAGTATGCCGA
GCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTATCTACTCTGGAG
TCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGTTGGAGATCATTG
TCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTGGAGGAGAAGATGCGGGA
AGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGTATTCTGCCTTCAAGCTA
GAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCTCAATCAGGCTCACTTGG
AGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGAGGGGATGATCGACAACTACAAGAGCCA
GGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCTGCGCAGCTAGAGCGCTGCGACAAAGAG
AACAAGATGCTTAAAGACGAGATGAACAAAGAAATCGAGGCGGCCCGTCGGCAGTTCCAGTCAC
AGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGAGGCCAAGCTGGCTGAGTG
TCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAGCCATCATTTCAGACCTG
CGCAGCCGGGTAAGGGACTGGCAGAAGGGATCCCACGAACTGGCCCGAGCAGGGGCCCGCTTAC
CGAGATGAGCTGCACGCCCCCCAAGGGAGGACCACTTCCTTTTTCTTGGCTGCCGATTTCTGAA
AGGAGTGAGCTATCATCAGTGCTGTGAAATAAAAGTCTGGTGTGCCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591519 ⟹ XP_017447008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,292 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,161,495 - 13,207,223 (+)	NCBI
Rnor_6.0	3	8,450,264 - 8,495,764 (+)	NCBI

Sequence:

show sequence

GGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGGGGAG
GAGCCGCCGCGGGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGA
CTTCAACGACTTCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTGGTTTCCATCGTGT
GGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCA
GTGTAACTGTGACGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAG
TGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGA
TGCAAGTGGGAGAATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCT
CGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCG
TTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAGGTCAAGATG
CAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAACTGGAGGAGG
TAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAACATCGAGCGCAT
CAAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGAAGGAATGCCTC
ATGTCCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTGCCAAACAAGTCATGGCCTTGA
AGGATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATCAACACCTTAAC
GAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGA
GATCTGTTGAGGGAGCAGCACTGCAAAGAGCTGTGCCTGAAAGTTCCTGAATGTGCGAGGCAGC
ACAGGCCTGGGAGGGAGAGGCAGGAGGATTGTCAGGATTCCGAGAGACTAATGGAGCAACAAGG
TGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCGCGCCTGCTGTTACTACTGCAA
GACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAGGCTCAAGCAAAGA
CAGCGTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCTTCGCTG
CAAAGAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAATTTAGAGCGCAGTGGGAACCAG
CACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAGACCGAG
ACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGAGGAGTA
TGCCGAGCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTATCTACT
CTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGTTGGAGA
TCATTGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTGGAGGAGAAGAT
GCGGGAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGTATTCTGCCTTC
AAGCTAGAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCTCAATCAGGCTC
ACTTGGAGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGAGGGGATGATCGACAACTACAA
GAGCCAGGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCTGCGCAGCTAGAGCGCTGCGAC
AAAGAGAACAAGATGCTTAAAGACGAGATGAACAAAGAAATCGAGGCGGCCCGTCGGCAGTTCC
AGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGAGGCCAAGCTGGC
TGAGTGTCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAGCCATCATTTCA
GACCTGCGCAGCCGGATCGAACATCAGGGGGACAAGCTGGAGTTGGCGAGAGAGAAACATCAGG
CTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAGGTGGATGAACTGGAGAGGAAACTGGAGGC
CACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAG
GCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCTTGGCGAGGCAGTTGGAGAGTG
CCATTGAAGATGCCAGGCGACAGGTGGAGCAAACCAAGGAACAGGCGCTCTCCAAGGAACGAGC
AGCCCAGAGCAAAATCCTGGACCTTGAGACCCAGCTGAGTAGGACCAAGACAGAACTTGGCCAG
CTACGCCGGACTCGTGATGATGTGGATCGAAGATACCAGAGCCGTCTGCAGGATCTGAAAGATC
GCCTGGAGCAGTCTGAAAGCACCAACCGCAGCATGCAGAATTACGTCCAATTCCTCAAGTCCTC
CTATGCAAATGTGTTTGGGGATGGGCCCTATACATCCTCCTACCTGACCAGCTCACCCATCCGC
TCTCGGTCTCCTCCTGCCTGAGGCCACCTATCCAGGGTCTGAAGCCCTTGCAGGATGCCAGACA
ACTGTGGCGTTACCAAACCATAGCTAGCAAGCCCACTGGGTCTCAGATGCGATCAGGGGTCTGT
TCCTCAACTAATGCCAGCAAAGACCCTAGAGCAGCCAGGGATGAATCAGGAGGGCTCTGGTTCT
CTCTCCTGATCTGGGAACCTGGTGGAATTTTCTAATGATCTTCACAGCCTTATATTTGCTATAT
TAGGTACTAGATTTTTAAATCCCTGTGACTAGAGTCTTCTTCCTTTCCTCAGGGAATGTTTGTA
CAGACTTCCTGCAGAGACGCCCTTCTCTTCTGAAGCGTCTCTGTCTTGGGTTTCTTTGAGCTGA
AGTTGCAGGAGTCCTTCTCTGACTCTGAAGGCCTACATTGCTTTTTCTTTCCTTTTTATTTATT
TATTTTTTATTTTTAATAAAAATAGAACTTTATTTGTATTAAGAAATAGTGAGGGGTTGGGGAT
TTAGCTCAGTAGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGA
AAAAAAGAAAAGGAAAAAAAAATAGTGAAAACATGTAAATTAGTAACTAAGCCTGTGCTTTTAT
CAGCATAAAAACATGACAGAGAGAGAGATGCAACGTTCGTTAGAGCTCATGGAGGTAAGAGGCT
CATAGCTCCTAGCTCCCGTGGAACCTGTAGCTACAAATGTCATGAAAATATGTTGTTGTAATAA
GTCCCTCATTACATAGCAACTGGCATGTCAGAGCTACAGCAGGTGTGTTCACAGTGAAATGTTT
GAACACAGACCAAACTGTGTGGCACGTGTGCTTGTAACCGTATGTTCTGGTTTCACAGTTCTGG
TAACACTAACTGACCACCTCTTACTGCAAGTAAAGTATAGAGCAGTGCAGGAATCCGCCCATCA
TCCCCTCACAGAGGCCGTGGTGATCTGTGTTGTTCCAGCATTGATGGATATGCTACTGAAGGGG
AATCTGCTTTTCTCTCCTTGGTGAGCAGGGCAGGAAGCAGTGTTTTCCACAGTGCCAATGGAAA
CCTCCCATGTCTGCCTTTTCTATAGGCCACTGGTCCTCAAGCTCGTCACAGACGCTCATGGCCA
TGCAGCCTGACATTCAAATTCCTATCTCATTATTTATCCTTTCTTTGCATCTCTGGGATTCATT
GATTTTTGACATTTTTGTGTGGTTTTACAGGAAATAAAGTTTTTATAGTCAGTTA

hide sequence

RefSeq Acc Id:

XM_017591520 ⟹ XP_017447009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,290 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,161,480 - 13,207,223 (+)	NCBI
Rnor_6.0	3	8,450,260 - 8,495,764 (+)	NCBI

Sequence:

show sequence

GGGGGGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGG
GGAGGAGCCGCCGCGGGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCT
CCGACTTCAACGACTTCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTGGTTTCCATC
GTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCA
CCCAGTGTAACTGTGACGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGC
GGAGTGTCCGGGTGAAAACCAAGAATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGA
AAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGT
AAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTG
AGGTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGA
ACTGGAGGAGGTAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAAC
ATCGAGCGCATCAAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGA
AGGAATGCCTCATGTCCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTGCCAAACAAGT
CATGGCCTTGAAGGATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATC
AACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACC
GCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAGCTGTGCCTGAAAGTTCCTGAATG
TGCGAGGCAGCACAGGCCTGGGAGGGAGAGGCAGGAGGATTGTCAGGATTCCGAGAGACTAATG
GAGCAACAAGGTGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCGCGCCTGCTGT
TACTACTGCAAGACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAGGC
TCAAGCAAAGACAGCGTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCA
CAGCTTCGCTGCAAAGAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAATTTAGAGCGCA
GTGGGAACCAGCACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAA
GGGAGACCGAGACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAG
AGTGAGGAGTATGCCGAGCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTATGTTGCTGAAG
CTTTATCTACTCTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCT
TGAGTTGGAGATCATTGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTG
GAGGAGAAGATGCGGGAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGT
ATTCTGCCTTCAAGCTAGAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCT
CAATCAGGCTCACTTGGAGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGAGGGGATGATC
GACAACTACAAGAGCCAGGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCTGCGCAGCTAG
AGCGCTGCGACAAAGAGAACAAGATGCTTAAAGACGAGATGAACAAAGAAATCGAGGCGGCCCG
TCGGCAGTTCCAGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGAG
GCCAAGCTGGCTGAGTGTCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAG
CCATCATTTCAGACCTGCGCAGCCGGATCGAACATCAGGGGGACAAGCTGGAGTTGGCGAGAGA
GAAACATCAGGCTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAGGTGGATGAACTGGAGAGG
AAACTGGAGGCCACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGG
CAATCCACCAGGCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCTTGGCGAGGCA
GTTGGAGAGTGCCATTGAAGATGCCAGGCGACAGGTGGAGCAAACCAAGGAACAGGCGCTCTCC
AAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACCCAGCTGAGTAGGACCAAGACAG
AACTTGGCCAGCTACGCCGGACTCGTGATGATGTGGATCGAAGATACCAGAGCCGTCTGCAGGA
TCTGAAAGATCGCCTGGAGCAGTCTGAAAGCACCAACCGCAGCATGCAGAATTACGTCCAATTC
CTCAAGTCCTCCTATGCAAATGTGTTTGGGGATGGGCCCTATACATCCTCCTACCTGACCAGCT
CACCCATCCGCTCTCGGTCTCCTCCTGCCTGAGGCCACCTATCCAGGGTCTGAAGCCCTTGCAG
GATGCCAGACAACTGTGGCGTTACCAAACCATAGCTAGCAAGCCCACTGGGTCTCAGATGCGAT
CAGGGGTCTGTTCCTCAACTAATGCCAGCAAAGACCCTAGAGCAGCCAGGGATGAATCAGGAGG
GCTCTGGTTCTCTCTCCTGATCTGGGAACCTGGTGGAATTTTCTAATGATCTTCACAGCCTTAT
ATTTGCTATATTAGGTACTAGATTTTTAAATCCCTGTGACTAGAGTCTTCTTCCTTTCCTCAGG
GAATGTTTGTACAGACTTCCTGCAGAGACGCCCTTCTCTTCTGAAGCGTCTCTGTCTTGGGTTT
CTTTGAGCTGAAGTTGCAGGAGTCCTTCTCTGACTCTGAAGGCCTACATTGCTTTTTCTTTCCT
TTTTATTTATTTATTTTTTATTTTTAATAAAAATAGAACTTTATTTGTATTAAGAAATAGTGAG
GGGTTGGGGATTTAGCTCAGTAGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTC
CCCAGCTCCGAAAAAAAGAAAAGGAAAAAAAAATAGTGAAAACATGTAAATTAGTAACTAAGCC
TGTGCTTTTATCAGCATAAAAACATGACAGAGAGAGAGATGCAACGTTCGTTAGAGCTCATGGA
GGTAAGAGGCTCATAGCTCCTAGCTCCCGTGGAACCTGTAGCTACAAATGTCATGAAAATATGT
TGTTGTAATAAGTCCCTCATTACATAGCAACTGGCATGTCAGAGCTACAGCAGGTGTGTTCACA
GTGAAATGTTTGAACACAGACCAAACTGTGTGGCACGTGTGCTTGTAACCGTATGTTCTGGTTT
CACAGTTCTGGTAACACTAACTGACCACCTCTTACTGCAAGTAAAGTATAGAGCAGTGCAGGAA
TCCGCCCATCATCCCCTCACAGAGGCCGTGGTGATCTGTGTTGTTCCAGCATTGATGGATATGC
TACTGAAGGGGAATCTGCTTTTCTCTCCTTGGTGAGCAGGGCAGGAAGCAGTGTTTTCCACAGT
GCCAATGGAAACCTCCCATGTCTGCCTTTTCTATAGGCCACTGGTCCTCAAGCTCGTCACAGAC
GCTCATGGCCATGCAGCCTGACATTCAAATTCCTATCTCATTATTTATCCTTTCTTTGCATCTC
TGGGATTCATTGATTTTTGACATTTTTGTGTGGTTTTACAGGAAATAAAGTTTTTATAGTCAGT
TA

hide sequence

RefSeq Acc Id:

XM_017591523 ⟹ XP_017447012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,266 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,161,480 - 13,207,223 (+)	NCBI
Rnor_6.0	3	8,450,260 - 8,495,764 (+)	NCBI

Sequence:

show sequence

GGGGGGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGG
GGAGGAGCCGCCGCGGGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCT
CCGACTTCAACGACTTCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTGGTTTCCATC
GTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCA
CCCAGTGTAACTGTGACGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGC
GGAGTGTCCGGGTGAAAACCAAGAATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGA
AAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGT
AAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTG
AGGTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGA
ACTGGAGGAGGTAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAAC
ATCGAGCGCATCAAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGA
AGGAATGCCTCATGTCCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTGCCAAACAAGT
CATGGCCTTGAAGGATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATC
AACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACC
GCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAGGATTCCGAGAGACTAATGGAGCA
ACAAGGTGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCGCGCCTGCTGTTACTA
CTGCAAGACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAGGCTCAAG
CAAAGACAGCGTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCT
TCGCTGCAAAGAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAATTTAGAGCGCAGTGGG
AACCAGCACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAG
ACCGAGACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGA
GGAGTATGCCGAGCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTA
TCTACTCTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGT
TGGAGATCATTGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTGGAGGA
GAAGATGCGGGAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGTATTCT
GCCTTCAAGCTAGAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCTCAATC
AGGCTCACTTGGAGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGAGGGGATGATCGACAA
CTACAAGAGCCAGGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCTGCGCAGCTAGAGCGC
TGCGACAAAGAGAACAAGATGCTTAAAGACGAGATGAACAAAGAAATCGAGGCGGCCCGTCGGC
AGTTCCAGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGAGGCCAA
GCTGGCTGAGTGTCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAGCCATC
ATTTCAGACCTGCGCAGCCGGATCGAACATCAGGGGGACAAGCTGGAGTTGGCGAGAGAGAAAC
ATCAGGCTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAGGTGGATGAACTGGAGAGGAAACT
GGAGGCCACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATC
CACCAGGCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCTTGGCGAGGCAGTTGG
AGAGTGCCATTGAAGATGCCAGGCGACAGGTGGAGCAAACCAAGGAACAGGCGCTCTCCAAGGA
ACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACCCAGCTGAGTAGGACCAAGACAGAACTT
GGCCAGCTACGCCGGACTCGTGATGATGTGGATCGAAGATACCAGAGCCGTCTGCAGGATCTGA
AAGATCGCCTGGAGCAGTCTGAAAGCACCAACCGCAGCATGCAGAATTACGTCCAATTCCTCAA
GTCCTCCTATGCAAATGTGTTTGGGGATGGGCCCTATACATCCTCCTACCTGACCAGCTCACCC
ATCCGCTCTCGGTCTCCTCCTGCCTGAGGCCACCTATCCAGGGTCTGAAGCCCTTGCAGGATGC
CAGACAACTGTGGCGTTACCAAACCATAGCTAGCAAGCCCACTGGGTCTCAGATGCGATCAGGG
GTCTGTTCCTCAACTAATGCCAGCAAAGACCCTAGAGCAGCCAGGGATGAATCAGGAGGGCTCT
GGTTCTCTCTCCTGATCTGGGAACCTGGTGGAATTTTCTAATGATCTTCACAGCCTTATATTTG
CTATATTAGGTACTAGATTTTTAAATCCCTGTGACTAGAGTCTTCTTCCTTTCCTCAGGGAATG
TTTGTACAGACTTCCTGCAGAGACGCCCTTCTCTTCTGAAGCGTCTCTGTCTTGGGTTTCTTTG
AGCTGAAGTTGCAGGAGTCCTTCTCTGACTCTGAAGGCCTACATTGCTTTTTCTTTCCTTTTTA
TTTATTTATTTTTTATTTTTAATAAAAATAGAACTTTATTTGTATTAAGAAATAGTGAGGGGTT
GGGGATTTAGCTCAGTAGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAG
CTCCGAAAAAAAGAAAAGGAAAAAAAAATAGTGAAAACATGTAAATTAGTAACTAAGCCTGTGC
TTTTATCAGCATAAAAACATGACAGAGAGAGAGATGCAACGTTCGTTAGAGCTCATGGAGGTAA
GAGGCTCATAGCTCCTAGCTCCCGTGGAACCTGTAGCTACAAATGTCATGAAAATATGTTGTTG
TAATAAGTCCCTCATTACATAGCAACTGGCATGTCAGAGCTACAGCAGGTGTGTTCACAGTGAA
ATGTTTGAACACAGACCAAACTGTGTGGCACGTGTGCTTGTAACCGTATGTTCTGGTTTCACAG
TTCTGGTAACACTAACTGACCACCTCTTACTGCAAGTAAAGTATAGAGCAGTGCAGGAATCCGC
CCATCATCCCCTCACAGAGGCCGTGGTGATCTGTGTTGTTCCAGCATTGATGGATATGCTACTG
AAGGGGAATCTGCTTTTCTCTCCTTGGTGAGCAGGGCAGGAAGCAGTGTTTTCCACAGTGCCAA
TGGAAACCTCCCATGTCTGCCTTTTCTATAGGCCACTGGTCCTCAAGCTCGTCACAGACGCTCA
TGGCCATGCAGCCTGACATTCAAATTCCTATCTCATTATTTATCCTTTCTTTGCATCTCTGGGA
TTCATTGATTTTTGACATTTTTGTGTGGTTTTACAGGAAATAAAGTTTTTATAGTCAGTTA

hide sequence

RefSeq Acc Id:

XM_017591524 ⟹ XP_017447013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,558,805 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,160,981 - 13,207,223 (+)	NCBI
Rnor_6.0	3	8,449,733 - 8,495,764 (+)	NCBI

Sequence:

show sequence

CCCCACGATCCGCTAACAGGGAAGCATAGTTGAGAAGATGGCGGCTCAGCAGAGAGAACCTCAG
CAGAGTAGGTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGA
GAACACCTTGTGGCGCACCCAGTGTAACTGTGACGAAATCTCATAAGCGCGGAATGAAAGGGGA
CACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAA
TCATCTGCCCGGCATGTGGGATGCAAGTGGGAGAATCCACCTCATTGCCTGGAGATCACACCAC
CATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTC
TGGTCACTGTAAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGT
CTCAAATCTGAGGTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGA
GGAAGGAAGAACTGGAGGAGGTAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCT
CAGACACAACATCGAGCGCATCAAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTC
CAGCAGGAGAAGGAATGCCTCATGTCCAAACTGGTGGAGGCTGAAATGGATGGGGCGGCTGCTG
CCAAACAAGTCATGGCCTTGAAGGATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTG
CACCGACATCAACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAA
GAGACCAACCGCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAGCTGTGCCTGAAAG
TTCCTGAATGTGCGAGGCAGCACAGGCCTGGGAGGGAGAGGCAGGAGGATTGTCAGGATTCCGA
GAGACTAATGGAGCAACAAGGTGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCG
CGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAAT
GTGAGAAGGCTCAAGCAAAGACAGCGTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCA
TTTGCAGGCACAGCTTCGCTGCAAAGAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAGAAT
TTAGAGCGCAGTGGGAACCAGCACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAAC
TGAAGCAAAAGGGAGACCGAGACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG
AGCTGAGAAGAGTGAGGAGTATGCCGAGCAGCTACATGTGCAGCTGGCCGACAAGGACCTTTAT
GTTGCTGAAGCTTTATCTACTCTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACA
AAGGAGACCTTGAGTTGGAGATCATTGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACA
ACAGAGCTTGGAGGAGAAGATGCGGGAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAA
ACTGCTGAGTATTCTGCCTTCAAGCTAGAGAACGAGAGGCTCAAGGCTAGCTTTGCCCCTATGG
AGGACAAGCTCAATCAGGCTCACTTGGAGGTCCAGCAACTGAAGGCATCAGTGAAGAACTACGA
GGGGATGATCGACAACTACAAGAGCCAGGTGATGAAAACAAGATTGGAGGCTGACGAAGTGGCT
GCGCAGCTAGAGCGCTGCGACAAAGAGAACAAGATGCTTAAAGACGAGATGAACAAAGAAATCG
AGGCGGCCCGTCGGCAGTTCCAGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAA
GATCACGGAGGCCAAGCTGGCTGAGTGTCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATC
GACCTCACAGCCATCATTTCAGACCTGCGCAGCCGGATCGAACATCAGGGGGACAAGCTGGAGT
TGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAGGTGGATGA
ACTGGAGAGGAAACTGGAGGCCACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAG
AGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCT
TGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAGGTGGAGCAAACCAAGGAACA
GGCGCTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACCCAGCTGAGTAGG
ACCAAGACAGAACTTGGCCAGCTACGCCGGACTCGTGATGATGTGGATCGAAGATACCAGAGCC
GTCTGCAGGATCTGAAAGATCGCCTGGAGCAGTCTGAAAGCACCAACCGCAGCATGCAGAATTA
CGTCCAATTCCTCAAGTCCTCCTATGCAAATGTGTTTGGGGATGGGCCCTATACATCCTCCTAC
CTGACCAGCTCACCCATCCGCTCTCGGTCTCCTCCTGCCTGAGGCCACCTATCCAGGGTCTGAA
GCCCTTGCAGGATGCCAGACAACTGTGGCGTTACCAAACCATAGCTAGCAAGCCCACTGGGTCT
CAGATGCGATCAGGGGTCTGTTCCTCAACTAATGCCAGCAAAGACCCTAGAGCAGCCAGGGATG
AATCAGGAGGGCTCTGGTTCTCTCTCCTGATCTGGGAACCTGGTGGAATTTTCTAATGATCTTC
ACAGCCTTATATTTGCTATATTAGGTACTAGATTTTTAAATCCCTGTGACTAGAGTCTTCTTCC
TTTCCTCAGGGAATGTTTGTACAGACTTCCTGCAGAGACGCCCTTCTCTTCTGAAGCGTCTCTG
TCTTGGGTTTCTTTGAGCTGAAGTTGCAGGAGTCCTTCTCTGACTCTGAAGGCCTACATTGCTT
TTTCTTTCCTTTTTATTTATTTATTTTTTATTTTTAATAAAAATAGAACTTTATTTGTATTAAG
AAATAGTGAGGGGTTGGGGATTTAGCTCAGTAGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCT
GGGTTTGGTCCCCAGCTCCGAAAAAAAGAAAAGGAAAAAAAAATAGTGAAAACATGTAAATTAG
TAACTAAGCCTGTGCTTTTATCAGCATAAAAACATGACAGAGAGAGAGATGCAACGTTCGTTAG
AGCTCATGGAGGTAAGAGGCTCATAGCTCCTAGCTCCCGTGGAACCTGTAGCTACAAATGTCAT
GAAAATATGTTGTTGTAATAAGTCCCTCATTACATAGCAACTGGCATGTCAGAGCTACAGCAGG
TGTGTTCACAGTGAAATGTTTGAACACAGACCAAACTGTGTGGCACGTGTGCTTGTAACCGTAT
GTTCTGGTTTCACAGTTCTGGTAACACTAACTGACCACCTCTTACTGCAAGTAAAGTATAGAGC
AGTGCAGGAATCCGCCCATCATCCCCTCACAGAGGCCGTGGTGATCTGTGTTGTTCCAGCATTG
ATGGATATGCTACTGAAGGGGAATCTGCTTTTCTCTCCTTGGTGAGCAGGGCAGGAAGCAGTGT
TTTCCACAGTGCCAATGGAAACCTCCCATGTCTGCCTTTTCTATAGGCCACTGGTCCTCAAGCT
CGTCACAGACGCTCATGGCCATGCAGCCTGACATTCAAATTCCTATCTCATTATTTATCCTTTC
TTTGCATCTCTGGGATTCATTGATTTTTGACATTTTTGTGTGGTTTTACAGGAAATAAAGTTTT
TATAGTCAGTTA

hide sequence

RefSeq Acc Id:

XM_039104449 ⟹ XP_038960377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,292 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,161,495 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

XM_039104450 ⟹ XP_038960378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,641 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,161,782 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

XM_039104455 ⟹ XP_038960383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,575,898 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,178,030 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

XM_039104456 ⟹ XP_038960384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,575,896 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,178,015 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

XM_039104458 ⟹ XP_038960386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,575,896 - 33,604,838 (+)	NCBI
mRatBN7.2	3	13,178,015 - 13,207,223 (+)	NCBI

RefSeq Acc Id:

XM_063283217 ⟹ XP_063139287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,292 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283218 ⟹ XP_063139288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,560,038 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283219 ⟹ XP_063139289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,561,853 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283220 ⟹ XP_063139290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,562,665 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283221 ⟹ XP_063139291

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,292 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283222 ⟹ XP_063139292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,558,805 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283223 ⟹ XP_063139293

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,557,738 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283224 ⟹ XP_063139294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,560,064 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283225 ⟹ XP_063139295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,644 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283226 ⟹ XP_063139296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,557,738 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283227 ⟹ XP_063139297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,560,094 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283228 ⟹ XP_063139298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,558,805 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283229 ⟹ XP_063139299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,557,738 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283230 ⟹ XP_063139300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,560,094 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283231 ⟹ XP_063139301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,559,645 - 33,604,838 (+)	NCBI

RefSeq Acc Id:

XM_063283232 ⟹ XP_063139302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,558,805 - 33,592,780 (+)	NCBI

RefSeq Acc Id:

XM_063283233 ⟹ XP_063139303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,561,901 - 33,592,780 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001138477	(Get FASTA)	NCBI Sequence Viewer
	NP_001386037	(Get FASTA)	NCBI Sequence Viewer
	NP_001386038	(Get FASTA)	NCBI Sequence Viewer
	NP_001386040	(Get FASTA)	NCBI Sequence Viewer
	NP_001386041	(Get FASTA)	NCBI Sequence Viewer
	NP_058909	(Get FASTA)	NCBI Sequence Viewer
	XP_017447008	(Get FASTA)	NCBI Sequence Viewer
	XP_017447009	(Get FASTA)	NCBI Sequence Viewer
	XP_017447012	(Get FASTA)	NCBI Sequence Viewer
	XP_017447013	(Get FASTA)	NCBI Sequence Viewer
	XP_038960377	(Get FASTA)	NCBI Sequence Viewer
	XP_038960378	(Get FASTA)	NCBI Sequence Viewer
	XP_038960383	(Get FASTA)	NCBI Sequence Viewer
	XP_038960384	(Get FASTA)	NCBI Sequence Viewer
	XP_038960386	(Get FASTA)	NCBI Sequence Viewer
	XP_063139287	(Get FASTA)	NCBI Sequence Viewer
	XP_063139288	(Get FASTA)	NCBI Sequence Viewer
	XP_063139289	(Get FASTA)	NCBI Sequence Viewer
	XP_063139290	(Get FASTA)	NCBI Sequence Viewer
	XP_063139291	(Get FASTA)	NCBI Sequence Viewer
	XP_063139292	(Get FASTA)	NCBI Sequence Viewer
	XP_063139293	(Get FASTA)	NCBI Sequence Viewer
	XP_063139294	(Get FASTA)	NCBI Sequence Viewer
	XP_063139295	(Get FASTA)	NCBI Sequence Viewer
	XP_063139296	(Get FASTA)	NCBI Sequence Viewer
	XP_063139297	(Get FASTA)	NCBI Sequence Viewer
	XP_063139298	(Get FASTA)	NCBI Sequence Viewer
	XP_063139299	(Get FASTA)	NCBI Sequence Viewer
	XP_063139300	(Get FASTA)	NCBI Sequence Viewer
	XP_063139301	(Get FASTA)	NCBI Sequence Viewer
	XP_063139302	(Get FASTA)	NCBI Sequence Viewer
	XP_063139303	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC08408	(Get FASTA)	NCBI Sequence Viewer
	AAC53134	(Get FASTA)	NCBI Sequence Viewer
	AAF80472	(Get FASTA)	NCBI Sequence Viewer
	AAF80473	(Get FASTA)	NCBI Sequence Viewer
	AAH78857	(Get FASTA)	NCBI Sequence Viewer
	ABN09907	(Get FASTA)	NCBI Sequence Viewer
	CAA64567	(Get FASTA)	NCBI Sequence Viewer
	EDL93361	(Get FASTA)	NCBI Sequence Viewer
	EDL93362	(Get FASTA)	NCBI Sequence Viewer
	EDL93363	(Get FASTA)	NCBI Sequence Viewer
	EDL93364	(Get FASTA)	NCBI Sequence Viewer
	EDL93365	(Get FASTA)	NCBI Sequence Viewer
	EDL93366	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020073
	ENSRNOP00000020407
	ENSRNOP00000041336.4
	ENSRNOP00000049041
	ENSRNOP00000086048
	ENSRNOP00000106847
GenBank Protein	Q6AYX5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_058909 ⟸ NM_017213
- Peptide Label:	isoform 2
- UniProtKB:	A6JTT2 (UniProtKB/TrEMBL), A6JTT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTK NPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGE RQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKL VEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR EQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELS KSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLK KAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLND RVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQ LKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLAD LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELARAGARLPR hide sequence

RefSeq Acc Id:	NP_001138477 ⟸ NM_001145005
- Peptide Label:	isoform 1
- UniProtKB:	G3V7X0 (UniProtKB/TrEMBL), A6JTT1 (UniProtKB/TrEMBL), A6JTT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGELPTGCRKRRRKRGGAAAGAGLHPPRRLHGTTLASDFNDFIRRRFWAQPCRSWFPSCGKNGV TSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVM RLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAH ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDT IGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRP GRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTAS ELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKE TLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIV LNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLE VQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ LADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELARAGARLP R hide sequence

RefSeq Acc Id:	XP_017447013 ⟸ XM_017591524
- Peptide Label:	isoform X6
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQQREPQQSRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKT KVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKI DSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKD FTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEL LLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKR LAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAEN SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLH VQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRD SLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMK TRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQ LQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQN VEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKI LDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVF GDGPYTSSYLTSSPIRSRSPPA hide sequence

RefSeq Acc Id:	XP_017447009 ⟸ XM_017591520
- Peptide Label:	isoform X2
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGELPTGCRKRRRKRGGAAAGAGLHPPRRLHGTTLASDFNDFIRRRFWAQPCRSWFPSCGKNGV TSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVM RLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAH ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDT IGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRP GRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTAS ELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKE TLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIV LNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLE VQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ LADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQ KENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIE DARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLE QSESTNRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSPIRSRSPPA hide sequence

RefSeq Acc Id:	XP_017447012 ⟸ XM_017591523
- Peptide Label:	isoform X5
- UniProtKB:	A0A8L2UM86 (UniProtKB/TrEMBL), A6JTT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGELPTGCRKRRRKRGGAAAGAGLHPPRRLHGTTLASDFNDFIRRRFWAQPCRSWFPSCGKNGV TSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVM RLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAH ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDT IGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLK RLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAE NSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQL HVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDR DSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVM KTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQD QLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQ NVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSK ILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV FGDGPYTSSYLTSSPIRSRSPPA hide sequence

RefSeq Acc Id:	XP_017447008 ⟸ XM_017591519
- Peptide Label:	isoform X1
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGELPTGCRKRRRKRGGAAAGAGLHPPRRLHGTTLASDFNDFIRRRFWAQPCRSWFPSCGKNGV TSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWEN PPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGER QMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLV EAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLRE QHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKE VEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEV EAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWR SRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENE RLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKM LKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSR IEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRL EEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTR DDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSPIRSRSPP A hide sequence

Ensembl Acc Id:

ENSRNOP00000041336 ⟸ ENSRNOT00000041921

Ensembl Acc Id:

ENSRNOP00000020407 ⟸ ENSRNOT00000020407

Ensembl Acc Id:

ENSRNOP00000020073 ⟸ ENSRNOT00000020073

Ensembl Acc Id:

ENSRNOP00000049041 ⟸ ENSRNOT00000040457

RefSeq Acc Id:	XP_038960377 ⟸ XM_039104449
- Peptide Label:	isoform X4
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960378 ⟸ XM_039104450
- Peptide Label:	isoform X8
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960384 ⟸ XM_039104456
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_038960386 ⟸ XM_039104458
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_038960383 ⟸ XM_039104455
- Peptide Label:	isoform X20

Ensembl Acc Id:

ENSRNOP00000086048 ⟸ ENSRNOT00000106575

RefSeq Acc Id:	NP_001386037 ⟸ NM_001399108
- Peptide Label:	isoform 3
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386041 ⟸ NM_001399112
- Peptide Label:	isoform 5
- UniProtKB:	A6JTT4 (UniProtKB/TrEMBL), A6JTT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386038 ⟸ NM_001399109
- Peptide Label:	isoform 4
- UniProtKB:	A6JTT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386040 ⟸ NM_001399111
- Peptide Label:	isoform 5
- UniProtKB:	A6JTT4 (UniProtKB/TrEMBL), A6JTT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139296 ⟸ XM_063283226
- Peptide Label:	isoform X14
- UniProtKB:	A0A0H2UHM4 (UniProtKB/TrEMBL), A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139293 ⟸ XM_063283223
- Peptide Label:	isoform X12
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139299 ⟸ XM_063283229
- Peptide Label:	isoform X16
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139292 ⟸ XM_063283222
- Peptide Label:	isoform X11
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139298 ⟸ XM_063283228
- Peptide Label:	isoform X15
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139302 ⟸ XM_063283232
- Peptide Label:	isoform X18
- UniProtKB:	A6JTT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139291 ⟸ XM_063283221
- Peptide Label:	isoform X10
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139287 ⟸ XM_063283217
- Peptide Label:	isoform X3
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139295 ⟸ XM_063283225
- Peptide Label:	isoform X13
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139301 ⟸ XM_063283231
- Peptide Label:	isoform X17
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139288 ⟸ XM_063283218
- Peptide Label:	isoform X7
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139294 ⟸ XM_063283224
- Peptide Label:	isoform X12
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139297 ⟸ XM_063283227
- Peptide Label:	isoform X14
- UniProtKB:	A0A0H2UHM4 (UniProtKB/TrEMBL), A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139300 ⟸ XM_063283230
- Peptide Label:	isoform X16
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139289 ⟸ XM_063283219
- Peptide Label:	isoform X9
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139303 ⟸ XM_063283233
- Peptide Label:	isoform X19
- UniProtKB:	A6JTT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139290 ⟸ XM_063283220
- Peptide Label:	isoform X9
- UniProtKB:	A6JTT3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106847 ⟸ ENSRNOT00000168851

Ensembl Acc Id:

ENSRNOP00000103782 ⟸ ENSRNOT00000163360

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYX5-F1-model_v2	AlphaFold	Q6AYX5	1-825	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691945

Promoter ID:

EPDNEW_R2470

Type:

multiple initiation site

Name:

Odf2_1

Description:

outer dense fiber of sperm tails 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2471

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	8,450,340 - 8,450,400	EPDNEW

RGD ID:

13691946

Promoter ID:

EPDNEW_R2471

Type:

initiation region

Name:

Odf2_2

Description:

outer dense fiber of sperm tails 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2470

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	8,450,601 - 8,450,661	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3229	AgrOrtholog
BioCyc Gene	G2FUF-50242	BioCyc
Ensembl Genes	ENSRNOG00000014584	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000020073	ENTREZGENE
	ENSRNOT00000020407	ENTREZGENE
	ENSRNOT00000040457	ENTREZGENE
	ENSRNOT00000041921.6	UniProtKB/Swiss-Prot
	ENSRNOT00000106575	ENTREZGENE
	ENSRNOT00000168851	ENTREZGENE
IMAGE_CLONE	IMAGE:7112637	IMAGE-MGC_LOAD
InterPro	Odf2-rel	UniProtKB/Swiss-Prot
KEGG Report	rno:29479	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93518	IMAGE-MGC_LOAD
NCBI Gene	29479	ENTREZGENE
PANTHER	OUTER DENSE FIBER PROTEIN 2	UniProtKB/Swiss-Prot
	PTHR23162	UniProtKB/Swiss-Prot
PhenoGen	Odf2	PhenoGen
RatGTEx	ENSRNOG00000014584	RatGTEx
Superfamily-SCOP	Myosin rod fragments	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GDL7_RAT	UniProtKB/TrEMBL
	A0A8L2UM86	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LE12_RAT	UniProtKB/TrEMBL
	A0ABK0LWQ5_RAT	UniProtKB/TrEMBL
	A6JTT1	ENTREZGENE, UniProtKB/TrEMBL
	A6JTT2	ENTREZGENE, UniProtKB/TrEMBL
	A6JTT3	ENTREZGENE, UniProtKB/TrEMBL
	A6JTT4	ENTREZGENE, UniProtKB/TrEMBL
	A6JTT6	ENTREZGENE, UniProtKB/TrEMBL
	G3V7X0	ENTREZGENE, UniProtKB/TrEMBL
	ODFP2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	O70408	UniProtKB/Swiss-Prot
	P97575	UniProtKB/Swiss-Prot
	Q62693	UniProtKB/Swiss-Prot
	Q9JIZ3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Name	Description	Reference	Status
2004-09-10	Odf2	outer dense fiber of sperm tails 2	sperm outer dense fiber major protein 2	Name updated	1299863	APPROVED
2002-06-10	Odf2	sperm outer dense fiber major protein 2		Name updated	70584	APPROVED
2001-07-23	Odf2	outer dense fiber of sperm tail 2		Name updated to reflect Human and Mouse nomenclature	67952	APPROVED
2001-07-23	Odf2	sperm outer dense fiber major protein 2		Name withdrawn	67952	WITHDRAWN

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed during spermatid development, highest expression is in elongating spermatids	69913

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message