H1f0 (H1.0 linker histone) - Rat Genome Database

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Gene: H1f0 (H1.0 linker histone) Rattus norvegicus
Analyze
Symbol: H1f0
Name: H1.0 linker histone
RGD ID: 2777
Description: Predicted to enable double-stranded DNA binding activity; minor groove of adenine-thymine-rich DNA binding activity; and nucleosomal DNA binding activity. Predicted to be involved in chromosome condensation; heterochromatin formation; and negative regulation of DNA recombination. Predicted to be located in euchromatin. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Orthologous to human H1-0 (H1.0 linker histone); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: H1 histone family, member 0; H1-0; H1fv; histone H1'; histone H1(0); Histone H1-0; histone H1.0; histone H10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,473,280 - 112,475,140 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,473,222 - 112,475,006 (+)EnsemblGRCr8
mRatBN7.27110,592,834 - 110,594,694 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,592,208 - 110,594,694 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7112,342,360 - 112,344,218 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,565,891 - 114,567,749 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,534,630 - 114,536,489 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,260,776 - 120,262,636 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07120,252,161 - 120,254,021 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47117,001,334 - 117,003,194 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,927,112 - 106,928,972 (+)NCBICelera
RGSC_v3.17117,035,563 - 117,037,417 (+)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
Ampullosporin  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
brequinar  (ISO)
Brodifacoum  (EXP)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
chlordecone  (ISO)
chlormequat chloride  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dimethylarsinic acid  (EXP)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
eugenol  (EXP)
fipronil  (EXP)
flutamide  (EXP)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
genistein  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxyacetic acid  (EXP,ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mitomycin C  (ISO)
Monobutylphthalate  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
quercetin  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
thapsigargin  (EXP)
thifluzamide  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cloning and analysis of cDNA for rat histone H1(0). Castiglia D, etal., Nucleic Acids Res 1993 Apr 11;21(7):1674.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Occurrence of histone H1 degrees protein in rat alveolar macrophages. Ghadam P and Rabbani A, Mol Cell Biochem 2002 Jul;236(1-2):45-51.
4. Cloning and analysis of the coding region of the histone H1(0)-encoding gene from rat PC12 cells. Martinez P, etal., Gene 1995 Dec 12;166(2):313-6.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9040779   PMID:9067599   PMID:11413144   PMID:12606334   PMID:15489334   PMID:15911621   PMID:16006555   PMID:19158276   PMID:19882353   PMID:21383955   PMID:22658674   PMID:22681889  
PMID:22868987   PMID:30053369   PMID:36509326  


Genomics

Comparative Map Data
H1f0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,473,280 - 112,475,140 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,473,222 - 112,475,006 (+)EnsemblGRCr8
mRatBN7.27110,592,834 - 110,594,694 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,592,208 - 110,594,694 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7112,342,360 - 112,344,218 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,565,891 - 114,567,749 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,534,630 - 114,536,489 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,260,776 - 120,262,636 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07120,252,161 - 120,254,021 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47117,001,334 - 117,003,194 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,927,112 - 106,928,972 (+)NCBICelera
RGSC_v3.17117,035,563 - 117,037,417 (+)NCBI
Cytogenetic Map7q34NCBI
H1-0
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,805,229 - 37,807,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,805,229 - 37,807,432 (+)Ensemblhg38GRCh38
GRCh372238,201,236 - 38,203,439 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,531,060 - 36,533,389 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342236,525,673 - 36,527,943NCBI
Celera2222,002,906 - 22,005,235 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,168,152 - 21,170,440 (+)NCBIHuRef
CHM1_12238,159,864 - 38,162,193 (+)NCBICHM1_1
T2T-CHM13v2.02238,266,869 - 38,269,059 (+)NCBIT2T-CHM13v2.0
H1f0
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,912,412 - 78,914,704 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,912,650 - 78,914,704 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381579,028,212 - 79,030,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,028,450 - 79,030,504 (+)Ensemblmm10GRCm38
MGSCv371578,858,642 - 78,860,934 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361578,855,467 - 78,857,759 (+)NCBIMGSCv36mm8
Celera1581,129,838 - 81,132,130 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
LOC102010789
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541324,182,547 - 24,184,588 (+)NCBIChiLan1.0ChiLan1.0
LOC100970460
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,663,463 - 47,665,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,351,834 - 50,354,155 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,720,235 - 18,722,440 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,551,246 - 36,553,595 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,551,693 - 36,552,277 (+)EnsemblpanPan2panpan1.1
H1-0
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,827,748 - 26,829,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,829,089 - 26,829,673 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1026,782,473 - 26,784,681 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01027,619,090 - 27,621,274 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,619,090 - 27,621,395 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,342,278 - 27,344,472 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,650,729 - 27,652,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,827,947 - 27,830,156 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101970440
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,303,470 - 10,305,627 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,315,048 - 3,315,632 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,314,991 - 3,315,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H1-0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,038,966 - 10,041,067 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1510,038,944 - 10,041,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,534,689 - 7,536,892 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H1-0
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,505,629 - 20,507,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,506,080 - 20,506,664 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045105,285,894 - 105,288,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101717518
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475210,103,866 - 10,105,983 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in H1f0
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:99
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000038697
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
U18295  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,593,725 - 110,593,889 (+)MAPPERmRatBN7.2
Rnor_6.07120,261,668 - 120,261,831NCBIRnor6.0
Rnor_5.07120,253,053 - 120,253,216UniSTSRnor5.0
RGSC_v3.47117,002,226 - 117,002,389UniSTSRGSC3.4
Celera7106,928,004 - 106,928,167UniSTS
Cytogenetic Map7q34UniSTS
RH128164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,593,931 - 110,594,428 (+)MAPPERmRatBN7.2
Rnor_6.07120,261,874 - 120,262,370NCBIRnor6.0
Rnor_5.07120,253,259 - 120,253,755UniSTSRnor5.0
RGSC_v3.47117,002,432 - 117,002,928UniSTSRGSC3.4
Celera7106,928,210 - 106,928,706UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000112015   ⟹   ENSRNOP00000093399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,592,208 - 110,594,694 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142437   ⟹   ENSRNOP00000102224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,473,222 - 112,475,006 (+)Ensembl
RefSeq Acc Id: NM_012578   ⟹   NP_036710
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,473,280 - 112,475,140 (+)NCBI
mRatBN7.27110,592,834 - 110,594,694 (+)NCBI
Rnor_6.07120,260,776 - 120,262,636 (+)NCBI
Rnor_5.07120,252,161 - 120,254,021 (+)NCBI
RGSC_v3.47117,001,334 - 117,003,194 (+)RGD
Celera7106,927,112 - 106,928,972 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_036710 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA92724 (Get FASTA)   NCBI Sequence Viewer  
  AAH61842 (Get FASTA)   NCBI Sequence Viewer  
  CAA50020 (Get FASTA)   NCBI Sequence Viewer  
  CAA51199 (Get FASTA)   NCBI Sequence Viewer  
  EDM15834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093399.1
GenBank Protein P43278 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036710   ⟸   NM_012578
- UniProtKB: P43278 (UniProtKB/Swiss-Prot),   A6HSN8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000093399   ⟸   ENSRNOT00000112015
Ensembl Acc Id: ENSRNOP00000102224   ⟸   ENSRNOT00000142437
Protein Domains
H15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43278-F1-model_v2 AlphaFold P43278 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2777 AgrOrtholog
BioCyc Gene G2FUF-32787 BioCyc
Ensembl Genes ENSRNOG00000063732 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000076993 Ensembl
Ensembl Transcript ENSRNOT00000112015.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621199 IMAGE-MGC_LOAD
InterPro Histone_H1/H5_H15 UniProtKB/Swiss-Prot
  Histone_H5 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:24437 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72534 IMAGE-MGC_LOAD
NCBI Gene 24437 ENTREZGENE
PANTHER HISTONE H1 UniProtKB/Swiss-Prot
  HISTONE H1.0 UniProtKB/Swiss-Prot
Pfam Linker_histone UniProtKB/Swiss-Prot
PhenoGen H1f0 PhenoGen
PRINTS HISTONEH5 UniProtKB/Swiss-Prot
PROSITE H15 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000063732 RatGTEx
  ENSRNOG00000076993 RatGTEx
SMART H15 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
TIGR TC204610
UniProt A0ABK0LCC0_RAT UniProtKB/TrEMBL
  A6HSN8 ENTREZGENE, UniProtKB/TrEMBL
  H10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-10 H1f0  H1.0 linker histone  H1f0  H1 histone family, member 0  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 H1f0  Histone H1-0      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in macrophages, monocytes and neutrophilic granulocytes 1298941