Fabp6 (fatty acid binding protein 6) - Rat Genome Database

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Gene: Fabp6 (fatty acid binding protein 6) Rattus norvegicus
Analyze
Symbol: Fabp6
Name: fatty acid binding protein 6
RGD ID: 2592
Description: Enables fatty acid binding activity. Involved in steroid metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human FABP6 (fatty acid binding protein 6); PARTICIPATES IN eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 14 kDa bile acid-binding protein; Fatty acid binding protein 6 (bile acid-binding protein); fatty acid binding protein 6, ileal; fatty acid binding protein 6, ileal (gastrotropin); fatty acid-binding protein 6; gastrotropin; GT; I-15P; I-BABP; IBABP; ILBP; ileal lipid-binding protein; intestinal 15 kDa protein; strain SHR/OlaIpcv fatty acid binding protein 6 (Fabp6) pseudogene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Eau7
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,565,054 - 28,569,727 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1028,565,054 - 28,573,058 (-)EnsemblGRCr8
mRatBN7.21028,063,603 - 28,068,276 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,063,603 - 28,068,282 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1511,451,958 - 11,452,442 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01512,364,736 - 12,365,220 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01510,665,227 - 10,665,711 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,191,621 - 29,196,593 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,191,623 - 29,196,563 (-)Ensemblrn6Rnor6.0
Rnor_5.01029,030,288 - 29,034,957 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41028,694,773 - 28,699,442 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1027,555,299 - 27,560,122 (-)NCBICelera
RGSC_v3.11028,695,821 - 28,700,491 (-)NCBI
Cytogenetic Map10q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA)
membrane  (IEA)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Sequencing and chromosomal localization of Fabp6 and an intronless Fabp6 segment in the rat. Bonne A, etal., Mol Biol Rep 2003 Sep;30(3):173-6.
2. Cloning of a cDNA encoding rat intestinal 15 kDa protein and its tissue distribution. Fujii H, etal., Biochem Biophys Res Commun 1993 Jan 15;190(1):175-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Molecular cloning, tissue distribution, and expression of a 14-kDa bile acid-binding protein from rat ileal cytosol. Gong YZ, etal., Proc Natl Acad Sci U S A 1994 May 24;91(11):4741-5.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2029905   PMID:2059206  


Genomics

Comparative Map Data
Fabp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,565,054 - 28,569,727 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1028,565,054 - 28,573,058 (-)EnsemblGRCr8
mRatBN7.21028,063,603 - 28,068,276 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,063,603 - 28,068,282 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1511,451,958 - 11,452,442 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01512,364,736 - 12,365,220 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01510,665,227 - 10,665,711 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,191,621 - 29,196,593 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,191,623 - 29,196,563 (-)Ensemblrn6Rnor6.0
Rnor_5.01029,030,288 - 29,034,957 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41028,694,773 - 28,699,442 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1027,555,299 - 27,560,122 (-)NCBICelera
RGSC_v3.11028,695,821 - 28,700,491 (-)NCBI
Cytogenetic Map10q21NCBI
FABP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,187,381 - 160,238,722 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,187,363 - 160,238,735 (+)Ensemblhg38GRCh38
GRCh375159,614,388 - 159,665,729 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,558,626 - 159,598,307 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345159,589,014 - 159,598,300NCBI
Celera5155,645,918 - 155,698,251 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,708,386 - 154,759,676 (+)NCBIHuRef
CHM1_15159,047,368 - 159,098,746 (+)NCBICHM1_1
T2T-CHM13v2.05160,715,939 - 160,767,284 (+)NCBIT2T-CHM13v2.0
Fabp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,486,867 - 43,492,389 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,486,876 - 43,492,367 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381143,596,040 - 43,601,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,596,049 - 43,601,540 (-)Ensemblmm10GRCm38
MGSCv371143,409,614 - 43,415,013 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361143,439,535 - 43,444,934 (-)NCBIMGSCv36mm8
Celera1148,218,219 - 48,223,585 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
Fabp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,102,226 - 14,111,547 (+)Ensembl
ChiLan1.0NW_00495540814,102,748 - 14,111,487 (+)NCBIChiLan1.0ChiLan1.0
FABP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,383,098 - 155,425,775 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,522,644 - 153,565,321 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,588,568 - 155,629,868 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,193,118 - 162,243,898 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,181,623 - 162,243,898 (+)EnsemblpanPan2panpan1.1
FABP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,471,988 - 50,477,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,471,986 - 50,477,915 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha450,367,012 - 50,373,005 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0450,907,585 - 50,913,579 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,907,583 - 50,913,515 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,715,177 - 50,721,161 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,839,100 - 50,845,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,359,762 - 51,365,756 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fabp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,874,587 - 104,886,004 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,323,811 - 3,335,384 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,323,866 - 3,335,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,297,595 - 63,303,697 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11663,297,594 - 63,303,675 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,721,296 - 68,727,380 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FABP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,588,089 - 62,598,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,589,178 - 62,598,809 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603415,006,267 - 15,016,079 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,350,157 - 29,370,116 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473329,324,593 - 29,368,351 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fabp6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1926,411,532 - 26,416,573 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fabp6
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:65
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000005205
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102702353561843633Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)101993920764939207Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)102011061465110614Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102183375861843633Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102342212132490778Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)102011061465110614Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
15 3 2 21 23 12 12 1 46 30 6 36 12

Sequence


Ensembl Acc Id: ENSRNOT00000005205   ⟹   ENSRNOP00000005205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1028,565,054 - 28,573,058 (-)Ensembl
mRatBN7.2 Ensembl1028,063,603 - 28,068,282 (-)Ensembl
Rnor_6.0 Ensembl1029,191,623 - 29,196,563 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083910   ⟹   ENSRNOP00000073219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1029,191,686 - 29,196,252 (-)Ensembl
RefSeq Acc Id: NM_017098   ⟹   NP_058794
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,565,054 - 28,569,727 (-)NCBI
mRatBN7.21028,063,603 - 28,068,276 (-)NCBI
Rnor_6.01029,191,623 - 29,196,292 (-)NCBI
Rnor_5.01029,030,288 - 29,034,957 (-)NCBI
RGSC_v3.41028,694,773 - 28,699,442 (-)RGD
Celera1027,555,299 - 27,560,122 (-)RGD
Sequence:
RefSeq Acc Id: NP_058794   ⟸   NM_017098
- UniProtKB: P80020 (UniProtKB/Swiss-Prot),   G3V6H6 (UniProtKB/TrEMBL),   A6HDN2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005205   ⟸   ENSRNOT00000005205
Ensembl Acc Id: ENSRNOP00000073219   ⟸   ENSRNOT00000083910
Protein Domains
Cytosolic fatty-acid binding proteins

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P80020-F1-model_v2 AlphaFold P80020 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697114
Promoter ID:EPDNEW_R7639
Type:single initiation site
Name:Fabp6_1
Description:fatty acid binding protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7640  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01029,196,302 - 29,196,362EPDNEW
RGD ID:13697131
Promoter ID:EPDNEW_R7640
Type:multiple initiation site
Name:Fabp6_2
Description:fatty acid binding protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7639  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01029,196,568 - 29,196,628EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2592 AgrOrtholog
BioCyc Gene G2FUF-25445 BioCyc
Ensembl Genes ENSRNOG00000003902 Ensembl
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
InterPro Calycin UniProtKB/Swiss-Prot
  Fatty_acid-bd UniProtKB/Swiss-Prot
  ILBP UniProtKB/Swiss-Prot
KEGG Report rno:25440 UniProtKB/Swiss-Prot
NCBI Gene 25440 ENTREZGENE
PANTHER PTHR11955 UniProtKB/Swiss-Prot
Pfam Lipocalin_7 UniProtKB/Swiss-Prot
PhenoGen Fabp6 PhenoGen
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot
PROSITE FABP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003902 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt A6HDN2 ENTREZGENE, UniProtKB/TrEMBL
  FABP6_RAT UniProtKB/Swiss-Prot
  G3V6H6 ENTREZGENE, UniProtKB/TrEMBL
  P80020 ENTREZGENE
  Q8JZL9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Fabp6  fatty acid binding protein 6  Fabp6  fatty acid binding protein 6, ileal  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-25 Fabp6  fatty acid binding protein 6, ileal  Fabp6  fatty acid binding protein 6, ileal (gastrotropin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Fabp6  fatty acid binding protein 6, ileal (gastrotropin)    fatty acid binding protein 6  Name updated 1299863 APPROVED
2003-04-09 Fabp6  fatty acid binding protein 6    Fatty acid binding protein 6 (bile acid-binding protein)  Name updated 629478 APPROVED
2002-06-10 Fabp6  Fatty acid binding protein 6 (bile acid-binding protein)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 127 amino acids; 15 kDa 728613