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Gene: Hapln1 (hyaluronan and proteoglycan link protein 1) Rattus norvegicus

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Symbol:

Hapln1

Name:

hyaluronan and proteoglycan link protein 1

RGD ID:

2412

Description:

Predicted to enable hyaluronic acid binding activity and structural molecule activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space; perineuronal net; and synapse. Orthologous to human HAPLN1 (hyaluronan and proteoglycan link protein 1); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cartilage link protein 1; cartilage-link protein; cartilage-linking protein 1; Crtl1; LP; MGC156657; proteoglycan link protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	22,366,967 - 22,431,709 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	22,366,967 - 22,429,098 (+)	Ensembl				GRCr8
mRatBN7.2	2	20,631,640 - 20,696,388 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	20,631,640 - 20,693,777 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	27,664,677 - 27,726,815 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	25,764,967 - 25,827,103 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	20,559,986 - 20,622,189 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	18,354,542 - 18,419,077 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	18,354,542 - 18,419,071 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	18,229,924 - 18,294,459 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	19,576,064 - 19,638,106 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	16,774,532 - 16,836,586 (+)	NCBI		Celera
RGSC_v3.1	2	19,534,388 - 19,557,456 (+)	NCBI
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

Congenital Limb Deformities (ISO)

Craniofacial Abnormalities (ISO)

Dwarfism (ISO)

rheumatoid arthritis (ISO)

spondyloepiphyseal dysplasia congenita (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dimethylhydrazine (ISO)

1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-D (ISO)

2-amino-2-deoxy-D-glucopyranose (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucosamine (EXP)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsenous acid (ISO)

belinostat (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-D-glucosamine (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

cyclosporin A (ISO)

cytarabine (ISO)

D-glucose (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

diquat (ISO)

dorsomorphin (ISO)

fenamidone (ISO)

fenvalerate (EXP)

flavonoids (EXP)

fructose (ISO)

glucose (ISO)

lithium chloride (ISO)

maneb (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paraquat (ISO)

phenylmercury acetate (ISO)

progesterone (ISO)

raloxifene (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (EXP)

Soman (EXP)

streptozocin (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

tamoxifen (ISO)

tetrachloroethene (ISO)

titanium dioxide (ISO)

triadimefon (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

central nervous system development (IBA)

skeletal system development (IBA)

Cellular Component

extracellular matrix (IEA,ISO)

extracellular space (IBA)

perineuronal net (IBA)

synapse (IBA,IEA,ISO)

Molecular Function

hyaluronic acid binding (IEA,TAS)

structural molecule activity (TAS)

References

References - curated

#	Reference Title	Reference Citation
1.	Link protein cDNA sequence reveals a tandemly repeated protein structure.	Doege K, etal., Proc Natl Acad Sci U S A 1986 Jun;83(11):3761-5.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Alternative splicing generates two different mRNA species for rat link protein.	Rhodes C, etal., J Biol Chem 1988 May 5;263(13):6063-7.
9.	Follicle-stimulating hormone and insulin-like growth factor I synergistically induce up-regulation of cartilage link protein (Crtl1) via activation of phosphatidylinositol-dependent kinase/Akt in rat granulosa cells.	Sun GW, etal., Endocrinology 2003 Mar;144(3):793-801.
10.	Mice lacking link protein develop dwarfism and craniofacial abnormalities.	Watanabe H and Yamada Y, Nat Genet 1999 Feb;21(2):225-9.

Additional References at PubMed

PMID:2419334	PMID:12477932	PMID:14620382	PMID:17206619	PMID:20339004	PMID:20551380	PMID:20566484	PMID:22206666	PMID:23979707	PMID:24534009	PMID:27068509	PMID:29476059
PMID:36737556	PMID:38580957

Genomics

Comparative Map Data

Hapln1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	22,366,967 - 22,431,709 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	22,366,967 - 22,429,098 (+)	Ensembl				GRCr8
mRatBN7.2	2	20,631,640 - 20,696,388 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	20,631,640 - 20,693,777 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	27,664,677 - 27,726,815 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	25,764,967 - 25,827,103 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	20,559,986 - 20,622,189 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	18,354,542 - 18,419,077 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	18,354,542 - 18,419,071 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	18,229,924 - 18,294,459 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	19,576,064 - 19,638,106 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	16,774,532 - 16,836,586 (+)	NCBI		Celera
RGSC_v3.1	2	19,534,388 - 19,557,456 (+)	NCBI
Cytogenetic Map	2	q12	NCBI

HAPLN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	83,637,805 - 83,720,855 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	83,637,805 - 83,723,528 (-)	Ensembl			hg38	GRCh38
GRCh37	5	82,933,624 - 83,016,674 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	82,972,493 - 83,052,454 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	82,972,500 - 83,052,454	NCBI
Celera	5	78,839,034 - 78,921,911 (-)	NCBI		Celera
Cytogenetic Map	5	q14.3	NCBI
HuRef	5	78,141,962 - 78,224,830 (-)	NCBI		HuRef
CHM1_1	5	82,366,947 - 82,449,878 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	84,126,276 - 84,209,363 (-)	NCBI		T2T-CHM13v2.0

Hapln1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	89,688,654 - 89,759,951 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	89,687,915 - 89,759,771 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	89,540,529 - 89,611,832 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	89,539,796 - 89,611,652 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	89,680,241 - 89,751,437 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	90,014,993 - 90,085,856 (+)	NCBI		MGSCv36	mm8
Celera	13	93,138,718 - 93,209,423 (+)	NCBI		Celera
Cytogenetic Map	13	C3	NCBI
cM Map	13	45.5	NCBI

Hapln1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	26,848,303 - 26,913,339 (+)	Ensembl
ChiLan1.0	NW_004955418	26,848,302 - 26,912,151 (+)	NCBI	ChiLan1.0	ChiLan1.0

HAPLN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	31,581,888 - 31,665,569 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	29,735,513 - 29,817,401 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	31,560,282 - 31,643,138 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	31,879,669 - 31,963,636 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	31,879,276 - 31,964,562 (+)	Ensembl			panPan2	panpan1.1

HAPLN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	23,999,148 - 24,077,935 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	23,998,545 - 24,074,580 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	25,237,411 - 25,313,949 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	23,898,912 - 23,975,479 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	23,932,039 - 23,977,175 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	23,855,989 - 23,944,815 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	23,828,709 - 23,905,165 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	24,115,889 - 24,192,354 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hapln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	179,817,517 - 179,882,913 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	2,742,846 - 2,808,123 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	2,745,568 - 2,772,789 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HAPLN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	91,857,582 - 91,907,351 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	91,857,495 - 91,935,485 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	93,941,323 - 94,019,486 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HAPLN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	77,746,505 - 77,831,509 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666049	26,655,535 - 26,739,732 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hapln1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	3,789,757 - 3,855,107 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624743	3,789,999 - 3,855,142 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hapln1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	206,678,946 - 206,743,358 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hapln1
332 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	460
Count of miRNA genes:	206
Interacting mature miRNAs:	254
Transcripts:	ENSRNOT00000042958, ENSRNOT00000043196
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
61368	Mcs1	Mammary carcinoma susceptibility QTL 1	4.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	25054526	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat

Markers in Region

BE103548

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	20,693,555 - 20,693,740 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	18,416,245 - 18,416,429	NCBI	Rnor6.0
Rnor_5.0	2	18,291,627 - 18,291,811	UniSTS	Rnor5.0
RGSC_v3.4	2	19,637,881 - 19,638,065	UniSTS	RGSC3.4
Celera	2	16,836,361 - 16,836,545	UniSTS
Cytogenetic Map	2	q12	UniSTS

CRTL1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	20,685,377 - 20,685,623 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	18,408,066 - 18,408,311	NCBI	Rnor6.0
Rnor_5.0	2	18,283,448 - 18,283,693	UniSTS	Rnor5.0
RGSC_v3.4	2	19,629,701 - 19,629,946	UniSTS	RGSC3.4
Celera	2	16,828,206 - 16,828,451	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	9	67	149	63	61	34	25	34	6	232	122	10	121	59	86	27	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001439407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_019189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AH002198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042958 ⟹ ENSRNOP00000045959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	22,366,967 - 22,429,098 (+)	Ensembl
mRatBN7.2 Ensembl	2	20,631,640 - 20,693,777 (+)	Ensembl
Rnor_6.0 Ensembl	2	18,354,542 - 18,416,466 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000043196 ⟹ ENSRNOP00000040553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	18,392,142 - 18,419,071 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108518 ⟹ ENSRNOP00000094436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	20,669,600 - 20,693,777 (+)	Ensembl

RefSeq Acc Id:

NM_019189 ⟹ NP_062062

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	22,366,967 - 22,429,102 (+)	NCBI
mRatBN7.2	2	20,631,640 - 20,693,781 (+)	NCBI
Rnor_6.0	2	18,354,542 - 18,416,470 (+)	NCBI
Rnor_5.0	2	18,229,924 - 18,294,459 (+)	NCBI
RGSC_v3.4	2	19,576,064 - 19,638,106 (+)	RGD
Celera	2	16,774,532 - 16,836,586 (+)	RGD

Sequence:

show sequence

CTCCCAGCTAAGTGGGACTCGAAGCTTCTGAACTGGAATTCAGGACAAGCAGAGAGGAGTCTGA
GCTACAAGGATGAGAAGTCTACTTTTCCTGGTGCTGATTTCAGTCTGTCGGGCTGACCACCTTT
CAGACAGCTACACTCCGGATCAAGACAGAGTTATTCACATCCAAGCTGAAAATGGCCCCCGTCT
ACTTGTGGAAGCAGAACAAGCCAAGGTCTTCTCGCACAGAGGTGGCAACGTGACACTGCCATGT
AAATTTTATCGAGACCCTACAGCATTTGGCTCGGGAATCCACAAAATCCGCATTAAGTGGACCA
AGCTAACTTCAGATTACCTCAGGGAAGTGGATGTCTTCGTTTCCATGGGCTATCACAAGAAAAC
CTACGGAGGTTATCAAGGCCGAGTGTTTCTGAAGGGAGGCAGTGATAATGACGCCTCCCTGATC
ATCACAGATCTCACCCTGGAGGATTATGGAAGATATAAGTGTGAGGTGATTGAAGGACTAGAAG
ATGATACTGCTGTGGTGGCATTAGAGTTACAAGGTGTGGTGTTCCCTTACTTTCCACGATTGGG
ACGCTACAATCTTAACTTTCACGAGGCTTGCCAGGCTTGTCTGGACCAGGATGCTGTGATTGCT
TCCTTCGACCAGCTGTACGATGCCTGGCGGGGCGGGCTGGATTGGTGCAATGCTGGCTGGCTCA
GTGACGGATCTGTGCAGTACCCAATCACCAAACCACGTGAGCCCTGCGGGGGCCAAAACACCGT
GCCTGGAGTCAGGAACTACGGGTTCTGGGACAAGGATAAGAGCAGATATGATGTTTTCTGTTTC
ACATCCAACTTCAATGGCCGATTTTACTACCTGATCCACCCCACCAAGCTTACCTACGACGAAG
CAGTGCAAGCTTGTCTCAATGATGGTGCTCAGATTGCGAAAGTGGGTCAGATATTTGCTGCCTG
GAAGCTTCTGGGCTATGACCGCTGCGATGCCGGATGGCTGGCGGATGGCAGTGTCCGCTACCCT
ATTTCTCGGCCAAGACGGCGCTGTAGTCCGACAGAGGCTGCAGTGCGCTTTGTGGGTTTCCCAG
ATAAAAAGCATAAGCTGTACGGGGTCTATTGCTTCCGAGCATACAACTGAGTGTGCCCTGGAGT
CAGTTCTCGAGATACGTGAAAGTTTTGTTCGTTTGTTTTTTGTTTTTAATATGAACTCATGCAA
GTTACCAAAACTGTGATAACCCTTTTTCACTTACTGTAAAGAGTCGTTTTCATAAAGGCCAATT
CATTCATTTGTTTTGTAAAGCTATCAGTCGATATATATTATAAATTAATATAAGCATAGGGGAG
CTAAAAAAGAGGGGGAGGGGCTTTAGAGCCTAACTGGTTTATGCTATGTCATCCCAACAAGATG
TCATTTCATGAAAGGGACATGCTGCAGGCTGACAGTCACCAGGACTGTATTAGGAAAATTAATG
CTACTTGCCGAAGTAACTTCCACAAGCACAAATTTTACATATTTCTACAATTTTGAAATGCACT
TCACTAAACAAATTAGAACAACGAATTTGAAATACAGGCTTCTTTACATAAACCAGGATTCTGG
GAGGTGCAAAAACTCAGTATCATAAGGGAATAACAGAGACTTTTTCTAAAAGTTAATACTTCAA
GTCTCCAGTATACAGAATAGTTTACTCTTTAAAAATCTACCTTTTTGACCAAAAAAATTCATAG
AGACTCAGATTAAAATTAAAAACCACGGTTAGATCTCCTAGGTCAACTCCTTTATATAAAGTAT
CGACTTAAGTACACAGATAATACTTTATCAATGAAAGAATCCTACCTTCTAATTACAATTACCT
ATCTGAGAAGACTTGTTTTATTATTTTTAAGTAGCTTTACTGAATTATATTTAAATTCTAAGAA
ACTTTGCTAAGCAGTATTTAGAATCTACTCAGGGCAGTTAAAATAGTAAACTGCTGGACAGAAA
ACAAGTACAATGTAGCAGCTTGACTTTATGTTAGTGTATGAAACATTATTGTCCTATAAAAGTA
ATTTTAATCTATTTAATATTTCTTATTTACATTACATGACAAAAGCCATCAAATGAATGAATAA
CTCTACATTTGCCTAACTAAGAAATAAAGACTCAACTTCCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231748 ⟹ XP_006231810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	22,404,138 - 22,431,709 (+)	NCBI
mRatBN7.2	2	20,668,807 - 20,696,388 (+)	NCBI
Rnor_6.0	2	18,391,649 - 18,419,077 (+)	NCBI
Rnor_5.0	2	18,229,924 - 18,294,459 (+)	NCBI

Sequence:

show sequence

CCTCCCTTTCTGTTTCAGCTCTTCATTTGCCTAATTGCCCTGTGAGCCTGGCGGGGACATTCCC
TGCAGGGCTCTGCTGACTGCAGAGACCCTACCTGACACTCCAAGGCGATGTGTCAGCACTTTAG
CTTGGAATGAATGAGAAATCAATCCGCTTGCCTGCAGTGGCGTGTCATGCACAGTTCTAATCTA
GTTTGTCCAAATTTTCACCTCTTCACCATAGACCCCAACAGTGTTTACAATGCAGAGAGGAGTC
TGAGCTACAAGGATGAGAAGTCTACTTTTCCTGGTGCTGATTTCAGTCTGTCGGGCTGACCACC
TTTCAGACAGCTACACTCCGGATCAAGACAGAGTTATTCACATCCAAGCTGAAAATGGCCCCCG
TCTACTTGTGGAAGCAGAACAAGCCAAGGTCTTCTCGCACAGAGGTGGCAACGTGACACTGCCA
TGTAAATTTTATCGAGACCCTACAGCATTTGGCTCGGGAATCCACAAAATCCGCATTAAGTGGA
CCAAGCTAACTTCAGATTACCTCAGGGAAGTGGATGTCTTCGTTTCCATGGGCTATCACAAGAA
AACCTACGGAGGTTATCAAGGCCGAGTGTTTCTGAAGGGAGGCAGTGATAATGACGCCTCCCTG
ATCATCACAGATCTCACCCTGGAGGATTATGGAAGATATAAGTGTGAGGTGATTGAAGGACTAG
AAGATGATACTGCTGTGGTGGCATTAGAGTTACAAGGTGTGGTGTTCCCTTACTTTCCACGATT
GGGACGCTACAATCTTAACTTTCACGAGGCTCGCCAGGCTTGTCTGGACCAGGATGCTGTGATT
GCTTCCTTCGACCAGCTGTACGATGCCTGGCGGGGCGGGCTGGATTGGTGCAATGCTGGCTGGC
TCAGTGACGGATCTGTGCAGTACCCAATCACCAAACCACGTGAGCCCTGCGGGGGCCAAAACAC
CGTGCCTGGAGTCAGGAACTACGGGTTCTGGGACAAGGATAAGAGCAGATATGATGTTTTCTGT
TTCACATCCAACTTCAATGGCCGATTTTACTACCTGATCCACCCCACCAAGCTTACCTACGACG
AAGCAGTGCAAGCTTGTCTCAATGATGGTGCTCAGATTGCGAAAGTGGGTCAGATATTTGCTGC
CTGGAAGCTTCTGGGCTATGACCGCTGCGATGCCGGATGGCTGGCGGATGGCAGTGTCCGCTAC
CCTATTTCTCGGCCAAGACGGCGCTGTAGTCCGACAGAGGCTGCAGTGCGCTTTGTGGGTTTCC
CAGATAAAAAGCATAAGCTGTACGGGGTCTATTGCTTCCGAGCATACAACTGAGTGTGCCCTGG
AGTCAGTTCTCGAGATACGTGAAAGTTTTGTTCGTTTGTTTTTTGTTTTTAATATGAACTCATG
CAAGTTACCAAAACTGTGATAACCCTTTTTCACTTACTGTAAAGAGTCGTTTTCATAAAGGCCA
ATTCATTCATTTGTTTTGTAAAGCTATCAGTCGATATATATTATAAATTAATATAAGCATAGGG
GAGCTAAAAAAGAGGGGGAGGGGCTTTAGAGCCTAACTGGTTTATGCTATGTCATCCCAACAAG
ATGTCATTTCATGAAAGGGACATGCTGCAGGCTGACAGTCACCAGGACTGTATTAGGAAAATTA
ATGCTACTTGCCGAAGTAACTTCCACAAGCACAAATTTTACATATTTCTACAATTTTGAAATGC
ACTTCACTAAACAAATTAGAACAACGAATTTGAAATACAGGCTTCTTTACATAAACCAGGATTC
TGGGAGGTGCAAAAACTCAGTATCATAAGGGAATAACAGAGACTTTTTCTAAAAGTTAATACTT
CAAGTCTCCAGTATACAGAATAGTTTACTCTTTAAAAATCTACCTTTTTGACCAAAAAAATTCA
TAGAGACTCAGATTAAAATTAAAAACCACGGTTAGATCTCCTAGGTCAACTCCTTTATATAAAG
TATCGACTTAAGTACACAGATAATACTTTATCAATGAAAGAATCCTACCTTCTAATTACAATTA
CCTATCTGAGAAGACTTGTTTTATTATTTTTAAGTAGCTTTACTGAATTATATTTAAATTCTAA
GAAACTTTGCTAAGCAGTATTTAGAATCTACTCAGGGCAGTTAAAATAGTAAACTGCTGGACAG
AAAACAAGTACAATGTAGCAGCTTGACTTTATGTTAGTGTATGAAACATTATTGTCCTATAAAA
GTAATTTTAATCTATTTAATATTTCTTATTTACATTACATGACAAAAGCCATCAAATGAATGAA
TAACTCTACATTTGCCTAACTAAGAAATAAAGACTCAACTTCCAAAATCGCTCTTGTTTGTCTG
CACGATATAGTGCCCAAGTAGGACCTGAACTTAGAGAAAAATTGGGGAAAATACATTTCTAAAT
AGTCCCTCAAATAGAAAAAACAGCCACTGTCAGTTTCCTTTCTGGTTAAATTTGGCAAAGTAAA
ATACTGGCATTCTCATAGCACACTTCACACCTTCAGGCTTTAAGTGAAAAGTTAAGCCCAGGTT
CAGAAAAGTAACTTCCAGTACTAGCAACTCCAGTCTTAAATAGCGAGTTCTTTTGACAACTGCT
GAGACCCCCAAAGGGACCAATATTTGTATTCAAGTAATAGTTCTGTTTTCTCATTACTTCACAG
TGAATTCTCATGAATGGGACTTAGTATAATAATCCAAGTATAACATATCTGGTATGCTGTCATC
AATGTTTTTATGTAGATTCCCCCCCCATGAACATAACTAAATAAATCTGTTTCCTGAATTGACC
ATGGTTGCACATAAAGCTCTGTAATAACTATAATAAAAATGCTCTATAAATATAGTTATGTGTG
TGGAAGATATAGAGCAGTTGGAAGTCCATGAAACCATAACTATCATGATATATCATCTAGATAA
AATATAGTAAGTAATAATAGGTCCTTTCTTTCAGAGGCTTAAACTGTGATGATGCATGTAGTTG
TGAGTTAGGGTATGCAAATTACACAAAAAGTATACATCCAAAGAAATAATGGGGTTTTACTCAA
ACAGCGATTATATAAACTGGACTCCAACTTCTAAGCTAAACACAAATTGAAGAGACTGAATGGC
CTATAACATAGTGAATACATTACTTAAGAAGGAGACTCCAAACTAGCTCCTTACAGGCTGGGCA
AAGCTCTTTGGAGGAAGATCATATACTTGAACCATCATTGCCTGTATTGTAAGAATTTTGTCTG
CAAGGCAAGTAGATACATTTTATACTGAGGTAGGTTCATTCCTTTCAGTTATCATCCTAGAAGT
CCACAGGGCAGTGCAGTAGCATTTCTTAACCTTTGAATACTTAGTATAGGAAACGGTGCTGATC
AAAACCTCCAGTGACTGTTAGCTGACGTATGTCTACACCAATCGCATACCATCTGTCCATTCTT
AAAAACATCCTAGAATGAACACTGCTGGGCAGAGTTTTTAACTTCTAATTTCACACAAAGGACC
AGAATCTTCATGCCCTTTGAACTCCTAATTGAAAGGGGTCTTTTAATATTCTCACCTTTCTGTT
TACTCCACCAAGTAATGTATTTTCCTACTTCATATCTCATTATGAATGTCTTCAAAAGAAAAAA
GTTGTCTTAGCACATTTCCTAGCAGAAAGTTGACCTAACAGTGTCTATTTCAGAAATCACATTG
TAGATGAAAGAGATGACAGATAGACTACAAAATAATGAAAATGTTTTATAGTATGGCCCATACA
TGAAGAACAGAACAAATCTATACATTTTACTGAAACTCCTTGATTTGAAACCTCTAAGCAAAAA
GATCCAATACATTTAAAAATACTTATAGGGATGAAGTTAATTTGTCATATTAACACTGGAAGCC
ATCTTTTAATGACTGCTGCCATATTTTGTCACAGCAACTTTTAGCCAAATGTAGTATTTGTAAA
TTTAAATTTTCTTTCATATAAAAAGGGCCGGTACCTGTTAAAGTGCTATTTTATGCAGCAAGAT
AGTAGCTTGTTATTTCAGCAATTAGTAGATTCAAATAAGATACCAATTTGGTTGCTGGCAGCCA
TACTGGGTTTCTTGATTTCAGTACTCCTAAAAACATGCTGATGTCATGGAGTAGCTGACTGCTA
AAAAAGGGAAAGTTAGAAGGGAATCAGTTGTCAGGTTAGGGTTAGTCTTGGTTTTTGTTTGTTT
GTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTCATTTTGTTTGTTTCTTTTTCTTTTTGCATAGA
ATGCTTAAAAAAAATCAATTGACAGCTGACAACTTTTTTGAGAAGTTAATTATGTCATAGTTCA
AGACTGCCAGCATAGTGTACAGCAACAGCTACGGATAATACAGAAGTCAGTAAGCCACCCAGTT
AGAAGAAGGTCAATATTTAAATGCATTTAATAGCTACAAAGGACAAGTTTGAGGAGAACCAATG
TGTATTGGAAAAAAAAAAGAATGTTTTCATTTTCTGTAAGATTCAATGAACTGGTGAACAAATA
TTAAAAGTCAATTTTGTTTTGCTACAGTATCATTTGATTCTTCTGACATATAGAATCAGTCATT
TTACCTTGAGTCAAACTCATTAAATGCACCATGAATTCTTCTGTTGCTAGTGCAATGCTTTGAA
TGGAACATACTCAAATGAGTTCCAGCTGTGAATTCACACAAGAAAGTATACTTCAGAACTTTCC
CATGCTGATTTTGGATACATTAAACAGCCTGAAGAAAAAAAACTTCCAGTAATGAGGTTAATTA
AATTTTCTTTTAGTGTGCAAAGTCTTTCAAAATGAGGAATATCCTATTCATTTTATCATCGTTT
TTCATATATTTTGATTTTTGTCATACAAAGTGTATGAGGCAGGGTGAAAGATTCTATGGAGGTT
CTAAGTCCCCAAATAAAAGTCATGAAACCA

hide sequence

RefSeq Acc Id:

XM_039101883 ⟹ XP_038957811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	22,404,486 - 22,431,709 (+)	NCBI
mRatBN7.2	2	20,669,232 - 20,696,388 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001426336	(Get FASTA)	NCBI Sequence Viewer
	NP_062062	(Get FASTA)	NCBI Sequence Viewer
	XP_006231810	(Get FASTA)	NCBI Sequence Viewer
	XP_038957811	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41535	(Get FASTA)	NCBI Sequence Viewer
	AAA41536	(Get FASTA)	NCBI Sequence Viewer
	AAI28741	(Get FASTA)	NCBI Sequence Viewer
	EDM09988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045959
	ENSRNOP00000045959.2
	ENSRNOP00000094436.1
GenBank Protein	P03994	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062062 ⟸ NM_019189
- Peptide Label:	precursor
- UniProtKB:	P03994 (UniProtKB/Swiss-Prot), A1A5N6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSLLFLVLISVCRADHLSDSYTPDQDRVIHIQAENGPRLLVEAEQAKVFSHRGGNVTLPCKFY RDPTAFGSGIHKIRIKWTKLTSDYLREVDVFVSMGYHKKTYGGYQGRVFLKGGSDNDASLIITD LTLEDYGRYKCEVIEGLEDDTAVVALELQGVVFPYFPRLGRYNLNFHEACQACLDQDAVIASFD QLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSN FNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKLLGYDRCDAGWLADGSVRYPISR PRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN hide sequence

RefSeq Acc Id:

XP_006231810 ⟸ XM_006231748

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRSLLFLVLISVCRADHLSDSYTPDQDRVIHIQAENGPRLLVEAEQAKVFSHRGGNVTLPCKFY
RDPTAFGSGIHKIRIKWTKLTSDYLREVDVFVSMGYHKKTYGGYQGRVFLKGGSDNDASLIITD
LTLEDYGRYKCEVIEGLEDDTAVVALELQGVVFPYFPRLGRYNLNFHEARQACLDQDAVIASFD
QLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSN
FNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKLLGYDRCDAGWLADGSVRYPISR
PRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN

hide sequence

Ensembl Acc Id:

ENSRNOP00000040553 ⟸ ENSRNOT00000043196

Ensembl Acc Id:

ENSRNOP00000045959 ⟸ ENSRNOT00000042958

RefSeq Acc Id:	XP_038957811 ⟸ XM_039101883
- Peptide Label:	isoform X1
- UniProtKB:	P03994 (UniProtKB/Swiss-Prot), A1A5N6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094436 ⟸ ENSRNOT00000108518

Protein Domains

Ig-like Ig-like V-type Link

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P03994-F1-model_v2	AlphaFold	P03994	1-354	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691051

Promoter ID:

EPDNEW_R1576

Type:

single initiation site

Name:

Hapln1_1

Description:

hyaluronan and proteoglycan link protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	18,354,529 - 18,354,589	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2412	AgrOrtholog
BioCyc Gene	G2FUF-54904	BioCyc
Ensembl Genes	ENSRNOG00000032002	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000042958	ENTREZGENE
	ENSRNOT00000042958.6	UniProtKB/Swiss-Prot
	ENSRNOT00000108518.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.10.100.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:8371477	IMAGE-MGC_LOAD
InterPro	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot
	CTDL_fold	UniProtKB/Swiss-Prot
	Hyaluronan_bind_Proteoglycan	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	Link_dom	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156657	IMAGE-MGC_LOAD
NCBI Gene	29331	ENTREZGENE
PANTHER	AGGRECAN/VERSICAN PROTEOGLYCAN	UniProtKB/Swiss-Prot
	HYALURONAN AND PROTEOGLYCAN LINK PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	V-set	UniProtKB/Swiss-Prot
	Xlink	UniProtKB/Swiss-Prot
PhenoGen	Hapln1	PhenoGen
PRINTS	LINKMODULE	UniProtKB/Swiss-Prot
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
	LINK_1	UniProtKB/Swiss-Prot
	LINK_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000032002	RatGTEx
SMART	IGv	UniProtKB/Swiss-Prot
	LINK	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF56436	UniProtKB/Swiss-Prot
UniProt	A1A5N6	ENTREZGENE, UniProtKB/TrEMBL
	A6I4N0_RAT	UniProtKB/TrEMBL
	HPLN1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Hapln1	hyaluronan and proteoglycan link protein 1	Crtl1	cartilage link protein 1	Symbol and Name updated	1299863	APPROVED
2002-06-10	Crtl1	cartilage link protein 1			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expression in granulosa cells increases in response to follicle-stimulating hormone and insulin-like growth factor	633558
gene_expression	expressed in cartilage	69818

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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